Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002584

Physical Location & Seq

Genomic Coordinates Forward (+)

19129580 .. 19134959

Gene Structure 5380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00015310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGAGATGTTTGTTGGTGTTGGACCTTCCAGAGTGAGAAACTTGTTTCAAGAAGCAAGGCAATGTGCTCCTAGTATTATATTTATTGATGAGATTGATGCAATTGGTCGAGCAAGGGGGCGTGGGGGCTTCTCAGGGTCCAATGATGAGCGTGAAAGCACTCTAAATCAATTGCTGGTAGAAATGGATGGCTTTGGAACAACTGCTGGAGTAGTTGTGCTTGCTGGAACCAATAGGCCTGATATTTTGGACAAAGCCTTACTAAGGCCTGGTCGATTTGATCGTCAGATTAGCATTGACAAACCTGATATTAAAGGTCGTGATCAGATATTTCAGATATACTTGAAAAAACTCAAACTTGATCAGGAGCCTTCATATTACTCTCAAAGGCTTGCAGCTCTGACTCCAGGATTTGCTGGAGCAGACATTGCCAATGTTTGCAATGAAGGTGCTTTAATTGCTGCCAGGAATGAAAGTGCACTAATCACGATGCAGCATTTTGAGTCAGCTATAGATAGGATAATTGGTGGTCTGGAAAAGAAGAACAGGGTTATTAGCAAGCTTGAACGCCGCACTGTTGCCTACCATGAGTCAGGGCATGCTGTAGCAGGATGGTTCTTAGAGCATGCAGAACCTTTGCTAAAAGTGACCATCGTTCCTCGAGGTACAGCAGCACTTGGGTTCGCCCAGTATGTTCCAAATGAAAACCTCCTTATGACCAAGGAGCAGCTTTTTGATATGACTTGCATGACCCTTGGTGGTAGAGCAGCTGAACAGGTTCTGTTGGGAAAAATTTCGACGGGAGCCCAAAACGATTTGGAGAAGGTGACAAAGATGACATATGCCCAAGTTGCAGTTTATGGTTTTAGCGACAAGGTGGGTCTTCTTTCTTTCCCTCAAAGAGATGATGGGTTTGAGATGTCAAAGCCCTACAGCAGTAAGACTGCAGCCCTTATTGATGGTGAAGTACGCGAATGGGTGGGCAAGGCTTATGCACACACACTTGCTCTCCTAGAAGAACACAAAGATCAAGTGGCTCAAATTGCAGAATTGTTGCTTGAAAAGGAAGTTCTTCACCAAGACGACCTTCTCAGGGTTTTGGGAGAGAGACCATACAAGTCAAGTGAAGTGAGCAATTATGATAGATTTAAGCAAGGTTTTGAAGATACAGATGAGAAAACTGTTGAGGTCCCCGTTGGTGTCGGGCATGAGGAAGAGGCCTCAGGTCTCCCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

412

Amino Acids

45.52

Weight (kDa)

5.32

Isoelectric Point (pI)

25.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	2 - 100	2.7e-25	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	130 - 168	5.4e-11	AAA+ lid domain
Peptidase_M41	PF01434	183 - 365	1.4e-65	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07510 AT2G29080
fragaria_vesca	FvH4_3g36790 FvH4_3g36790 FvH4_3g36790 FvH4_6g13480 FvH4_6g13480 FvH4_6g13480
malus_domestica	MD03G1088300.v1.1 MD03G1088400.v1.1 MD04G1130900.v1.1 MD11G1097400.v1.1 MD12G1144000.v1.1
prunus_persica	Prupe.6G072600_v2.0.a1 Prupe.6G257400_v2.0.a1 Prupe.6G257400_v2.0.a1
pyrus_communis	pycom03g06980 pycom03g07000 pycom04g11920 pycom11g08210 pycom12g13860
rosa_chinensis	RchiOBHm_Chr3g0466351 RchiOBHm_Chr5g0065851
rosa_laevigata	RLG00000024582 RLG00000035821
rosa_multiflora	Rmu_sc0003480.1_g000012 Rmu_sc0042868.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015310 Rroxscaffold_6G00414550
rosa_rugosa	Rorug03G0081200 Rorug05G0374100 Rorug05G0374200 Rorug05G0374300
rosa_samantha	Rh3BG148900 Rh3DG149600 Rh5BG449200 Rh5CG471400 Rh5DG462800
rosa_wichuraiana	Rw3G012050 Rw5G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	660
AccII	CGCG	1 cut(s)	972
AciI	CCGC	1 cut(s)	571
AcsI	RAATTY	1 cut(s)	792
AfaI	GTAC	2 cut(s)	667, 969
AfiI	CCNNNNNNNGG	2 cut(s)	264, 1093
AgsI	TTSAA	5 cut(s)	50, 346, 566, 1061, 1163
AjnI	CCWGG	3 cut(s)	268, 406, 464
AjuI	GAANNNNNNNTTGG	2 cut(s)	1071, 1103
AluBI	AGCT	5 cut(s)	398, 509, 562, 730, 770
AluI	AGCT	5 cut(s)	398, 509, 562, 730, 770
Alw21I	GWGCWC	2 cut(s)	70, 481
Alw26I	GTCTC	2 cut(s)	1102, 1232
Alw44I	GTGCAC	1 cut(s)	477
AlwNI	CAGNNNCTG	1 cut(s)	781
Ama87I	CYCGRG	1 cut(s)	660
AoxI	GGCC	3 cut(s)	236, 266, 1218
ApaLI	GTGCAC	1 cut(s)	477
ApeKI	GCWGC	7 cut(s)	395, 461, 493, 671, 727, 767, 947
ApoI	RAATTY	1 cut(s)	792
Asp700I	GAANNNNTTC	3 cut(s)	777, 793, 1071
AspS9I	GGNCC	3 cut(s)	23, 138, 1189
AsuHPI	GGTGA	3 cut(s)	838, 974, 1067
AvaI	CYCGRG	1 cut(s)	660
AvaII	GGWCC	3 cut(s)	23, 138, 1189
AxyI	CCTNAGG	1 cut(s)	1222
BaeGI	GKGCMC	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	808
BbsI	GAAGAC	1 cut(s)	875
Bbv12I	GWGCWC	2 cut(s)	70, 481
BbvI	GCAGC	7 cut(s)	407, 448, 505, 683, 739, 779, 959
BccI	CCATC	5 cut(s)	182, 606, 659, 902, 953
BciT130I	CCWGG	3 cut(s)	270, 408, 466
BclI	TGATCA	2 cut(s)	322, 361
BcoDI	GTCTC	2 cut(s)	1102, 1232
BfaI	CTAG	2 cut(s)	72, 1013
BfmI	CTRYAG	4 cut(s)	510, 603, 931, 945
BisI	GCNGC	8 cut(s)	396, 462, 494, 571, 672, 728, 768, 948
BlsI	GCNGC	8 cut(s)	397, 463, 495, 572, 673, 729, 769, 949
Bme1390I	CCNGG	3 cut(s)	270, 408, 466
Bme18I	GGWCC	3 cut(s)	23, 138, 1189
BmeT110I	CYCGRG	1 cut(s)	660
BmgT120I	GGNCC	3 cut(s)	23, 138, 1189
BmiI	GGNNCC	5 cut(s)	139, 229, 369, 805, 1191
BmrFI	CCNGG	3 cut(s)	270, 408, 466
BmrI	ACTGGG	1 cut(s)	682
BmsI	GCATC	2 cut(s)	88, 480
BmuI	ACTGGG	1 cut(s)	682
BpiI	GAAGAC	1 cut(s)	875
BpmI	CTGGAG	3 cut(s)	228, 390, 438
BsaI	GGTCTC	2 cut(s)	1102, 1232
BsaJI	CCNNGG	2 cut(s)	720, 754
BsaXI	ACNNNNNCTCC	4 cut(s)	201, 231, 993, 1023
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 1093
Bse1I	ACTGG	1 cut(s)	688
Bse21I	CCTNAGG	1 cut(s)	1222
Bse3DI	GCAATG	3 cut(s)	68, 426, 448
BseBI	CCWGG	3 cut(s)	270, 408, 466
BseDI	CCNNGG	2 cut(s)	720, 754
BseGI	GGATG	2 cut(s)	193, 617
BseLI	CCNNNNNNNGG	2 cut(s)	264, 1093
BseMI	GCAATG	3 cut(s)	68, 426, 448
BseMII	CTCAG	3 cut(s)	147, 1105, 1236
BseNI	ACTGG	1 cut(s)	688
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	7 cut(s)	407, 448, 505, 683, 739, 779, 959
Bsh1236I	CGCG	1 cut(s)	972
BshFI	GGCC	3 cut(s)	238, 268, 1220
BsiHKAI	GWGCWC	2 cut(s)	70, 481
BsiHKCI	CYCGRG	1 cut(s)	660
BslFI	GGGAC	1 cut(s)	1175
BslI	CCNNNNNNNGG	2 cut(s)	264, 1093
BsmAI	GTCTC	2 cut(s)	1102, 1232
BsmFI	GGGAC	1 cut(s)	1175
BsnI	GGCC	3 cut(s)	238, 268, 1220
Bso31I	GGTCTC	2 cut(s)	1102, 1232
BsoBI	CYCGRG	1 cut(s)	660
Bsp1286I	GDGCHC	3 cut(s)	70, 481, 808
Bsp143I	GATC	4 cut(s)	280, 322, 361, 1027
BspACI	CCGC	1 cut(s)	571
BspANI	GGCC	3 cut(s)	238, 268, 1220
BspCNI	CTCAG	3 cut(s)	146, 1104, 1235
BspFNI	CGCG	1 cut(s)	972
BspLI	GGNNCC	5 cut(s)	139, 229, 369, 805, 1191
BspMAI	CTGCAG	1 cut(s)	949
BspTNI	GGTCTC	2 cut(s)	1102, 1232
BsrDI	GCAATG	3 cut(s)	68, 426, 448
BsrI	ACTGG	1 cut(s)	688
BssECI	CCNNGG	2 cut(s)	720, 754
BssMI	GATC	4 cut(s)	280, 322, 361, 1027
BssT1I	CCWWGG	2 cut(s)	720, 754
Bst2UI	CCWGG	3 cut(s)	270, 408, 466
Bst4CI	ACNGT	2 cut(s)	577, 1183
Bst6I	CTCTTC	1 cut(s)	1209
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstC8I	GCNNGC	5 cut(s)	222, 393, 560, 600, 627
BstDEI	CTNAG	6 cut(s)	133, 263, 619, 1091, 1222, 1236
BstENI	CCTNNNNNAGG	1 cut(s)	262
BstF5I	GGATG	2 cut(s)	193, 617
BstFNI	CGCG	1 cut(s)	972
BstKTI	GATC	4 cut(s)	283, 325, 364, 1030
BstMAI	GTCTC	2 cut(s)	1102, 1232
BstMBI	GATC	4 cut(s)	280, 322, 361, 1027
BstMWI	GCNNNNNNNGC	4 cut(s)	428, 458, 851, 1043
BstNI	CCWGG	3 cut(s)	270, 408, 466
BstNSI	RCATGY	2 cut(s)	602, 629
BstSCI	CCNGG	3 cut(s)	268, 406, 464
BstSFI	CTRYAG	4 cut(s)	510, 603, 931, 945
BstSLI	GKGCMC	1 cut(s)	481
BstUI	CGCG	1 cut(s)	972
BstV1I	GCAGC	7 cut(s)	407, 448, 505, 683, 739, 779, 959
BstV2I	GAAGAC	1 cut(s)	875
Bsu36I	CCTNAGG	1 cut(s)	1222
BsuRI	GGCC	3 cut(s)	238, 268, 1220
BtsCI	GGATG	2 cut(s)	193, 617
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	5 cut(s)	222, 393, 560, 600, 627
CaiI	CAGNNNCTG	1 cut(s)	781
Cfr13I	GGNCC	3 cut(s)	23, 138, 1189
Csp6I	GTAC	2 cut(s)	666, 968
CviAII	CATG	5 cut(s)	587, 599, 626, 748, 1208
CviQI	GTAC	2 cut(s)	666, 968
DdeI	CTNAG	6 cut(s)	133, 263, 619, 1091, 1222, 1236
DpnI	GATC	4 cut(s)	282, 324, 363, 1029
DpnII	GATC	4 cut(s)	280, 322, 361, 1027
Eam1104I	CTCTTC	1 cut(s)	1209
EarI	CTCTTC	1 cut(s)	1209
Eco130I	CCWWGG	2 cut(s)	720, 754
Eco147I	AGGCCT	3 cut(s)	238, 268, 1220
Eco24I	GRGCYC	1 cut(s)	808
Eco31I	GGTCTC	2 cut(s)	1102, 1232
Eco47I	GGWCC	3 cut(s)	23, 138, 1189
Eco81I	CCTNAGG	1 cut(s)	1222
Eco88I	CYCGRG	1 cut(s)	660
EcoNI	CCTNNNNNAGG	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	1189
EcoRII	CCWGG	3 cut(s)	268, 406, 464
EcoT14I	CCWWGG	2 cut(s)	720, 754
EcoT38I	GRGCYC	1 cut(s)	808
ErhI	CCWWGG	2 cut(s)	720, 754
FaeI	CATG	5 cut(s)	590, 602, 629, 751, 1211
FalI	AAGNNNNNCTT	2 cut(s)	1071, 1103
FaqI	GGGAC	1 cut(s)	1175
FatI	CATG	5 cut(s)	586, 598, 625, 747, 1207
FauNDI	CATATG	1 cut(s)	841
FbaI	TGATCA	2 cut(s)	322, 361
Fnu4HI	GCNGC	8 cut(s)	396, 462, 494, 571, 672, 728, 768, 948
FokI	GGATG	2 cut(s)	200, 624
FriOI	GRGCYC	1 cut(s)	808
Fsp4HI	GCNGC	8 cut(s)	396, 462, 494, 571, 672, 728, 768, 948
FspBI	CTAG	2 cut(s)	72, 1013
GluI	GCNGC	8 cut(s)	396, 462, 494, 571, 672, 728, 768, 948
GsuI	CTGGAG	3 cut(s)	228, 390, 438
HaeIII	GGCC	3 cut(s)	238, 268, 1220
Hin1II	CATG	5 cut(s)	590, 602, 629, 751, 1211
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	3 cut(s)	403, 503, 590
HphI	GGTGA	3 cut(s)	838, 974, 1067
Hpy166II	GTNNAC	1 cut(s)	479
Hpy188I	TCNGA	4 cut(s)	288, 327, 336, 402
Hpy188III	TCNNGA	6 cut(s)	30, 50, 320, 365, 487, 533
Hpy8I	GTNNAC	1 cut(s)	479
Hpy99I	CGWCG	1 cut(s)	802
HpyAV	CCTTC	5 cut(s)	36, 381, 440, 817, 1097
HpyCH4III	ACNGT	2 cut(s)	577, 1183
HpyF10VI	GCNNNNNNNGC	4 cut(s)	428, 458, 851, 1043
HpyF3I	CTNAG	6 cut(s)	133, 263, 619, 1091, 1222, 1236
Hsp92II	CATG	5 cut(s)	590, 602, 629, 751, 1211
Ksp22I	TGATCA	2 cut(s)	322, 361
Kzo9I	GATC	4 cut(s)	280, 322, 361, 1027
LmnI	GCTCC	5 cut(s)	73, 367, 419, 724, 803
Lsp1109I	GCAGC	7 cut(s)	407, 448, 505, 683, 739, 779, 959
LweI	GCATC	2 cut(s)	88, 480
MaeI	CTAG	2 cut(s)	72, 1013
MaeIII	GTNAC	2 cut(s)	646, 826
MalI	GATC	4 cut(s)	282, 324, 363, 1029
MboI	GATC	4 cut(s)	280, 322, 361, 1027
MboII	GAAGA	6 cut(s)	553, 875, 1028, 1064, 1175, 1226
MfeI	CAATTG	2 cut(s)	102, 170
MhlI	GDGCHC	3 cut(s)	70, 481, 808
MluCI	AATT	8 cut(s)	102, 170, 456, 522, 792, 1041, 1049, 1135
MlyI	GAGTC	3 cut(s)	397, 512, 599
MnlI	CCTC	8 cut(s)	656, 669, 719, 906, 1180, 1204, 1210, 1231
MroXI	GAANNNNTTC	3 cut(s)	777, 793, 1071
MseI	TTAA	3 cut(s)	312, 455, 1149
MspA1I	CMGCKG	1 cut(s)	770
MspR9I	CCNGG	3 cut(s)	270, 408, 466
MunI	CAATTG	2 cut(s)	102, 170
MvaI	CCWGG	3 cut(s)	270, 408, 466
MvnI	CGCG	1 cut(s)	972
MwoI	GCNNNNNNNGC	4 cut(s)	428, 458, 851, 1043
NdeI	CATATG	1 cut(s)	841
NdeII	GATC	4 cut(s)	280, 322, 361, 1027
NlaIII	CATG	5 cut(s)	590, 602, 629, 751, 1211
NlaIV	GGNNCC	5 cut(s)	139, 229, 369, 805, 1191
NmuCI	GTSAC	2 cut(s)	646, 826
NspI	RCATGY	2 cut(s)	602, 629
PaeI	GCATGC	2 cut(s)	602, 629
PaeR7I	CTCGAG	1 cut(s)	660
PceI	AGGCCT	3 cut(s)	238, 268, 1220
PcsI	WCGNNNNNNNCGW	1 cut(s)	280
PdmI	GAANNNNTTC	3 cut(s)	777, 793, 1071
PfoI	TCCNGGA	1 cut(s)	406
PkrI	GCNGC	8 cut(s)	397, 463, 495, 572, 673, 729, 769, 949
PleI	GAGTC	3 cut(s)	397, 511, 598
PpsI	GAGTC	3 cut(s)	397, 511, 598
PpuMI	RGGWCCY	1 cut(s)	1189
Psp5II	RGGWCCY	1 cut(s)	1189
Psp6I	CCWGG	3 cut(s)	268, 406, 464
PspGI	CCWGG	3 cut(s)	268, 406, 464
PspN4I	GGNNCC	5 cut(s)	139, 229, 369, 805, 1191
PspPI	GGNCC	3 cut(s)	23, 138, 1189
PspPPI	RGGWCCY	1 cut(s)	1189
PspXI	VCTCGAGB	1 cut(s)	660
PstI	CTGCAG	1 cut(s)	949
PstNI	CAGNNNCTG	1 cut(s)	781
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	2 cut(s)	667, 969
RsaNI	GTAC	2 cut(s)	666, 968
SaqAI	TTAA	3 cut(s)	312, 455, 1149
SatI	GCNGC	8 cut(s)	396, 462, 494, 571, 672, 728, 768, 948
Sau3AI	GATC	4 cut(s)	280, 322, 361, 1027
Sau96I	GGNCC	3 cut(s)	23, 138, 1189
SchI	GAGTC	3 cut(s)	397, 512, 599
ScrFI	CCNGG	3 cut(s)	270, 408, 466
SduI	GDGCHC	3 cut(s)	70, 481, 808
SfaNI	GCATC	2 cut(s)	88, 480
SfcI	CTRYAG	4 cut(s)	510, 603, 931, 945
Sfr274I	CTCGAG	1 cut(s)	660
SinI	GGWCC	3 cut(s)	23, 138, 1189
SlaI	CTCGAG	1 cut(s)	660
SmlI	CTYRAG	1 cut(s)	660
SmoI	CTYRAG	1 cut(s)	660
SphI	GCATGC	2 cut(s)	602, 629
Sse9I	AATT	8 cut(s)	102, 170, 456, 522, 792, 1041, 1049, 1135
SseBI	AGGCCT	3 cut(s)	238, 268, 1220
SsiI	CCGC	1 cut(s)	571
SspMI	CTAG	2 cut(s)	72, 1013
StuI	AGGCCT	3 cut(s)	238, 268, 1220
StyD4I	CCNGG	3 cut(s)	268, 406, 464
StyI	CCWWGG	2 cut(s)	720, 754
TaaI	ACNGT	2 cut(s)	577, 1183
TaqI	TCGA	4 cut(s)	109, 274, 661, 797
TasI	AATT	8 cut(s)	102, 170, 456, 522, 792, 1041, 1049, 1135
TauI	GCSGC	1 cut(s)	573
Tru1I	TTAA	3 cut(s)	312, 455, 1149
Tru9I	TTAA	3 cut(s)	312, 455, 1149
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	2 cut(s)	646, 826
TseI	GCWGC	7 cut(s)	395, 461, 493, 671, 727, 767, 947
Tsp45I	GTSAC	2 cut(s)	646, 826
TspDTI	ATGAA	4 cut(s)	363, 459, 486, 717
TspRI	CASTG	1 cut(s)	580
VneI	GTGCAC	1 cut(s)	477
VpaK11BI	GGWCC	3 cut(s)	23, 138, 1189
XagI	CCTNNNNNAGG	1 cut(s)	262
XapI	RAATTY	1 cut(s)	792
XceI	RCATGY	2 cut(s)	602, 629
XhoI	CTCGAG	1 cut(s)	660
XmnI	GAANNNNTTC	3 cut(s)	777, 793, 1071
XspI	CTAG	2 cut(s)	72, 1013

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.