Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002584

Physical Location & Seq

Genomic Coordinates Reverse (-)

50467978 .. 50469440

Gene Structure 1463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0374200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCTTCCTCCTCTCTCACTTCACAGTGAATTATCTCTCACGAACAAGCTAATTGTAGTGCCTGCATGGCATGGTGTTTGCAACACCAACAAGGGGAAGCCATGGTCATATTGTTCATCATCATCTAATAGAACAAGTGTTGTTGTTCGTGCATTGAAGGAAGAGTCGCAGCAGTTTGAAGTAGACCCAGAGAAGGCCAGAGAGGCCCTTAGAAATCTTGATCAGCAGTTTCAATCTCGCTCCCAGAAACAAGTCCGCTCGAGACCCAAGAAAGAACCTGCTCCCTCTGTGAATTTTACAAGAAATCAAACAAAAGAAGCAGCTGAGGAATTTTCAGGATCTTTTTTCACATACACGGCTGTTGCTCTCATTGCTTTCACAATTTTCTATAATGTGTTCTTTTACACTGTTATAAAGCCATCTGTAGATGGATTTTCAGAGGACGCACCAACCAAAAATGTTGTAAGCGAAATCCCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

160

Amino Acids

18.05

Weight (kDa)

9.12

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07510 AT2G29080
fragaria_vesca	FvH4_3g36790 FvH4_3g36790 FvH4_3g36790 FvH4_6g13480 FvH4_6g13480 FvH4_6g13480
malus_domestica	MD03G1088300.v1.1 MD03G1088400.v1.1 MD04G1130900.v1.1 MD11G1097400.v1.1 MD12G1144000.v1.1
prunus_persica	Prupe.6G072600_v2.0.a1 Prupe.6G257400_v2.0.a1 Prupe.6G257400_v2.0.a1
pyrus_communis	pycom03g06980 pycom03g07000 pycom04g11920 pycom11g08210 pycom12g13860
rosa_chinensis	RchiOBHm_Chr3g0466351 RchiOBHm_Chr5g0065851
rosa_laevigata	RLG00000024582 RLG00000035821
rosa_multiflora	Rmu_sc0003480.1_g000012 Rmu_sc0042868.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015310 Rroxscaffold_6G00414550
rosa_rugosa	Rorug03G0081200 Rorug05G0374100 Rorug05G0374200 Rorug05G0374300
rosa_samantha	Rh3BG148900 Rh3DG149600 Rh5BG449200 Rh5CG471400 Rh5DG462800
rosa_wichuraiana	Rw3G012050 Rw5G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	286
AccBSI	CCGCTC	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	1 cut(s)	346
AcsI	RAATTY	2 cut(s)	292, 329
AfiI	CCNNNNNNNGG	2 cut(s)	93, 193
AgsI	TTSAA	3 cut(s)	157, 179, 233
AluBI	AGCT	2 cut(s)	49, 323
AluI	AGCT	2 cut(s)	49, 323
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	1 cut(s)	346
Ama87I	CYCGRG	1 cut(s)	259
AoxI	GGCC	2 cut(s)	195, 204
ApeKI	GCWGC	2 cut(s)	169, 320
ApoI	RAATTY	2 cut(s)	292, 329
AspS9I	GGNCC	1 cut(s)	205
AvaI	CYCGRG	1 cut(s)	259
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	181, 332
BccI	CCATC	2 cut(s)	422, 427
BceAI	ACGGC	1 cut(s)	372
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	256
BfmI	CTRYAG	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	286
BglI	GCCNNNNNGGC	2 cut(s)	67, 203
BisI	GCNGC	2 cut(s)	170, 321
BlsI	GCNGC	2 cut(s)	171, 322
BmeT110I	CYCGRG	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 193
Bse3DI	GCAATG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	101
BseLI	CCNNNNNNNGG	2 cut(s)	93, 193
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	315
BseXI	GCAGC	2 cut(s)	181, 332
BshFI	GGCC	2 cut(s)	197, 206
BsiHKCI	CYCGRG	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	93, 193
BsmAI	GTCTC	1 cut(s)	256
BsnI	GGCC	2 cut(s)	197, 206
Bso31I	GGTCTC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	220, 338
Bsp19I	CCATGG	1 cut(s)	101
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	2 cut(s)	197, 206
BspCNI	CTCAG	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	346
BspTNI	GGTCTC	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	2 cut(s)	220, 338
BssT1I	CCWWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	26, 409
Bst6I	CTCTTC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	2 cut(s)	209, 324
BstDSI	CCRYGG	1 cut(s)	101
BstKTI	GATC	2 cut(s)	223, 341
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	2 cut(s)	220, 338
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 203, 371
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	2 cut(s)	181, 332
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	197, 206
BtgI	CCRYGG	1 cut(s)	101
BtsIMutI	CAGTG	2 cut(s)	31, 405
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	205
CseI	GACGC	1 cut(s)	452
CviAII	CATG	3 cut(s)	66, 71, 102
CviJI	RGCY	7 cut(s)	49, 100, 197, 206, 323, 359, 418
CviKI_1	RGCY	7 cut(s)	49, 100, 197, 206, 323, 359, 418
DdeI	CTNAG	2 cut(s)	209, 324
DpnI	GATC	2 cut(s)	222, 340
DpnII	GATC	2 cut(s)	220, 338
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	101
Eco31I	GGTCTC	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
FaeI	CATG	3 cut(s)	69, 74, 105
FaiI	YATR	7 cut(s)	67, 72, 103, 109, 352, 390, 413
FatI	CATG	3 cut(s)	65, 70, 101
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	170, 321
Fsp4HI	GCNGC	2 cut(s)	170, 321
GluI	GCNGC	2 cut(s)	170, 321
HaeIII	GGCC	2 cut(s)	197, 206
HgaI	GACGC	1 cut(s)	452
Hin1II	CATG	3 cut(s)	69, 74, 105
HinfI	GANTC	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	439
Hpy188III	TCNNGA	4 cut(s)	40, 218, 261, 336
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	151, 187
HpyCH4III	ACNGT	2 cut(s)	26, 409
HpyCH4V	TGCA	3 cut(s)	65, 81, 152
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 203, 371
HpyF3I	CTNAG	2 cut(s)	209, 324
Hsp92II	CATG	3 cut(s)	69, 74, 105
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	220, 338
LmnI	GCTCC	2 cut(s)	245, 286
LpnPI	CCDG	6 cut(s)	75, 201, 211, 257, 291, 321
Lsp1109I	GCAGC	2 cut(s)	181, 332
MalI	GATC	2 cut(s)	222, 340
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	2 cut(s)	220, 338
MboII	GAAGA	1 cut(s)	173
MflI	RGATCY	1 cut(s)	338
MluCI	AATT	5 cut(s)	29, 51, 292, 329, 381
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	6 cut(s)	18, 21, 196, 295, 319, 433
MspA1I	CMGCKG	1 cut(s)	323
MwoI	GCNNNNNNNGC	3 cut(s)	67, 203, 371
NcoI	CCATGG	1 cut(s)	101
NdeII	GATC	2 cut(s)	220, 338
NlaIII	CATG	3 cut(s)	69, 74, 105
PaeR7I	CTCGAG	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	171, 322
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PsiI	TTATAA	1 cut(s)	413
PspPI	GGNCC	1 cut(s)	205
PsuI	RGATCY	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	323
SatI	GCNGC	2 cut(s)	170, 321
Sau3AI	GATC	2 cut(s)	220, 338
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	173
SetI	ASST	3 cut(s)	51, 280, 325
SfcI	CTRYAG	1 cut(s)	423
SfiI	GGCCNNNNNGGCC	1 cut(s)	203
Sfr274I	CTCGAG	1 cut(s)	259
SlaI	CTCGAG	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	5 cut(s)	29, 51, 292, 329, 381
SsiI	CCGC	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	2 cut(s)	26, 409
TaqI	TCGA	1 cut(s)	260
TasI	AATT	5 cut(s)	29, 51, 292, 329, 381
TscAI	CASTG	2 cut(s)	31, 412
TseI	GCWGC	2 cut(s)	169, 320
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	2 cut(s)	31, 412
XapI	RAATTY	2 cut(s)	292, 329
XhoI	CTCGAG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.