Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002584

Physical Location & Seq

Genomic Coordinates Forward (+)

7305108 .. 7309657

Gene Structure 4550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1088400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2358 bp

ATGTGGTTTTTCGTTAAAGTAAACAGGCGATCGGCGGGTCTGATTGGGAATGGAGGGATTTCTGGAGTTCCCCGTTGTGGTTCGTATCTGGGTCCGGTCGACGGGGAATTAAGGTTTTTGAGGTCGTATTTTGCTGCGTCAATAGCAGCCCACAAAGCCCGCGTCTCGGATTTCAGTTGCATTCTTGCAAACCCTAAACTTTGCCTACACTTTTCGAGTGAAACCCCAAAGAAAAAGAATTCTGAGAACTTCCATCCCAAGGAAAAGAAGGAAATTCCAAAAGGGGATGAGCAGAAAACGAAGCCGAAAGACGAATCAAAGACGGATAATCAGAAATTTTTCTTGAGACACGCTCCCAATTTAATCATCCTGCTATCAGCCATTATGATATTACTCTCCATCTTGCTAATTTATGTTGTTAAACAAATAGAGATAAGTGTGCAAGAGATGCAGATAAGTTTCCAAGAGTTTAAAAACCAACTTCTGGAACCGGGCTTAGTGGATAATATAGTTGTCTTTGATAAATTAATTGCACTCGTGTATGTGCGTAGCTCGCCACGCAGTCAGACAAGTGAGGAAGTTGTCCAAGGGCCTGATATCCATGTTCCTGCAAAACGGGGCGAGTGCAAGTACTTTATTATTGGAAGTATTGAATCTTTTGAGAAGAGGTTGGAGGATGCCCAGGAAGCATTGGGAATAGACAGTCATGATTTCGTTCCTGTTGCATATGGCTCTAATATGGTTTGGTTCCTAGAATTGATGAGATTTTTACCTACACTACCTATACTACTGCTTTTGGGAAGTTTCTTGTTAGTGGAGTGGAGAACGCACCGTGGACTAGGCATTGGTGGACGAAGTGCCCGTGGAATATTCAATATAGGAAAAGCCCAAGTAACGAAAGTAGATAAAAATGATAAGAACAAGATCTATTTTAAAGATGTTGCTGGTTGCGACGAAGCAAAGCAGGAAATCATGGAATTTGTGCACTTTCTAAAGAATCCTCAGAAATATGAGGATTTGGGAGCCAAAATTCCCAAGGGAGCTTTATTGGTAGGGCCTCCAGGCACTGGAAAGACCCTCCTAGCAAAAGCAACCGCGGGGGAATCTGGTGTTCCGTTTCTATCTATATCTGGATCAGACTTCATGGAGATGGTAGTTGGTGTTGGACCGTCTAGAGTTAGAAACTTGTTTCAGGAAGCAAGGCAATGTGCTCCAAGTATTATATTTATTGATGAGATTGATGCAATTGGTCGAGCAAGAGGGCGTGGTGGCTTCTCAGGTTCCAATGATGAGCGTGAGAGTACTCTAAATCAGTTGTTGGTAGAAATGGATGGCTTTGGAACAACTGCTGGAGTAGTTGTGCTTGCTGGCACCAATAGGCCTGATATTTTGGACAAAGCCTTATTAAGGCCTGGTCGATTTGATCGCCAAGTCTCTATTGATAAACCCGATATTAAAGGTCGTGACCAGGTATTTCAGATATACTTGAAGAAGATCAAACTTGATCATGAACCATCATATTATTCTCAAAGGCTTGCAGCCCTGACTCCAGGGTTTGCTGGGGCAGACATTGCAAATGTTTGCAATGAAGGTGCCTTAATTGCGGCAAGAAATGAGAGTGAACTGGTTACAATGCAGCATTTTGAGGCGGCTATAGACAGAATTATTGGTGGTTTGGAGAAGAAGAACAGGGTTATAAGCAAGCTCGAGCGCCGTACTGTTGCCTACCATGAGTCAGGGCATGCTGTTACTGGCTGGTTCTTAGAACACGCAGAACCGTTGTTGAAAGTGACCATTGTTCCTCGAGGTACTGCAGCACTTGGGTTTGCCCAGTATGTTCTAAATGAAAACCTCCTCATGACCAAGGAGCAGCTTTTTGATATGACCTGCATGACCCTCGGGGGTAGAGCAGCTGAACAGGTTATGTTGGGAAAAATATCTACGGTAGCCCAAAACGATCTAGAGAAAGTGACAAAGATGACATACGCCCAAATTGCAGTGCACGGTTTCAATGACAAGGTGGGTCTCCTGTCTTTCCCTCAAAGGGAAGAATCATTTGAGATGTCAAAGCCCTACAGCAGCAAGACTGGAGCCCTTATTGACAGTGAAGTGCGCGAATGGGTGGGTAAGGCTTATGCACGCACAGTTGAACTCGTAGAGGAACATAAAGAGCAAGTAGCTCAAATTGCAGAACTGTTGCTTGAAAAGGAAGTTCTTCACCAAGATGACCTGCTCAAGGTGTTGGGGGGAAGACCATATAAACCTGCTGAAGCGACCAACTACGATAGATTTAAGGAAGGTTTCGAAGGGAAAGGTGATGAGAAAACAGTGGAGACCGCTGGTTGGGGCCGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

786

Amino Acids

87.14

Weight (kDa)

7.61

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	349 - 480	2.8e-42	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	511 - 550	4.8e-11	AAA+ lid domain
Peptidase_M41	PF01434	564 - 746	1.9e-59	Peptidase family M41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07510 AT2G29080
fragaria_vesca	FvH4_3g36790 FvH4_3g36790 FvH4_3g36790 FvH4_6g13480 FvH4_6g13480 FvH4_6g13480
malus_domestica	MD03G1088300.v1.1 MD03G1088400.v1.1 MD04G1130900.v1.1 MD11G1097400.v1.1 MD12G1144000.v1.1
prunus_persica	Prupe.6G072600_v2.0.a1 Prupe.6G257400_v2.0.a1 Prupe.6G257400_v2.0.a1
pyrus_communis	pycom03g06980 pycom03g07000 pycom04g11920 pycom11g08210 pycom12g13860
rosa_chinensis	RchiOBHm_Chr3g0466351 RchiOBHm_Chr5g0065851
rosa_laevigata	RLG00000024582 RLG00000035821
rosa_multiflora	Rmu_sc0003480.1_g000012 Rmu_sc0042868.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015310 Rroxscaffold_6G00414550
rosa_rugosa	Rorug03G0081200 Rorug05G0374100 Rorug05G0374200 Rorug05G0374300
rosa_samantha	Rh3BG148900 Rh3DG149600 Rh5BG449200 Rh5CG471400 Rh5DG462800
rosa_wichuraiana	Rw3G012050 Rw5G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1697
AbsI	CCTCGAGG	1 cut(s)	1803
Acc36I	ACCTGC	3 cut(s)	1895, 2238, 2272
AccB1I	GGYRCC	2 cut(s)	1370, 1592
AccB7I	CCANNNNNTGG	2 cut(s)	484, 1067
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	3 cut(s)	162, 1097, 2115
AciI	CCGC	7 cut(s)	35, 160, 1095, 1097, 1604, 1649, 2337
AclWI	GGATC	1 cut(s)	1141
AcsI	RAATTY	5 cut(s)	238, 273, 335, 977, 1029
AcuI	CTGAAG	1 cut(s)	2289
AfaI	GTAC	4 cut(s)	632, 1303, 1717, 1810
AgsI	TTSAA	7 cut(s)	653, 874, 1489, 1786, 2011, 2150, 2204
AjnI	CCWGG	5 cut(s)	681, 1060, 1411, 1467, 1549
AluBI	AGCT	6 cut(s)	552, 1043, 1705, 1873, 1913, 2180
AluI	AGCT	6 cut(s)	552, 1043, 1705, 1873, 1913, 2180
Alw21I	GWGCWC	3 cut(s)	987, 1213, 2004
Alw26I	GTCTC	5 cut(s)	169, 340, 1438, 2030, 2327
Alw44I	GTGCAC	2 cut(s)	983, 2000
AlwI	GGATC	1 cut(s)	1141
AlwNI	CAGNNNCTG	1 cut(s)	1067
Ama87I	CYCGRG	3 cut(s)	1706, 1803, 1898
AoxI	GGCC	5 cut(s)	590, 1055, 1379, 1409, 2347
ApaLI	GTGCAC	2 cut(s)	983, 2000
ApeKI	GCWGC	8 cut(s)	134, 146, 1538, 1636, 1814, 1870, 1910, 2079
ApoI	RAATTY	5 cut(s)	238, 273, 335, 977, 1029
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AseI	ATTAAT	1 cut(s)	527
Asp700I	GAANNNNTTC	2 cut(s)	338, 2214
AspLEI	GCGC	2 cut(s)	1713, 2115
AspS9I	GGNCC	5 cut(s)	92, 590, 1055, 1166, 2347
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	2 cut(s)	2210, 2327
AsuII	TTCGAA	1 cut(s)	2304
AvaI	CYCGRG	3 cut(s)	1706, 1803, 1898
AvaII	GGWCC	2 cut(s)	92, 1166
BaeGI	GKGCMC	3 cut(s)	862, 987, 2004
BanI	GGYRCC	2 cut(s)	1370, 1592
BanII	GRGCYC	1 cut(s)	2095
BauI	CACGAG	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	2257
Bbv12I	GWGCWC	3 cut(s)	987, 1213, 2004
BbvI	GCAGC	8 cut(s)	121, 158, 1550, 1648, 1826, 1882, 1922, 2091
BccI	CCATC	5 cut(s)	261, 407, 1144, 1325, 1522
BceAI	ACGGC	1 cut(s)	1698
BcgI	CGANNNNNNTGC	2 cut(s)	1879, 1913
BciT130I	CCWGG	5 cut(s)	683, 1062, 1413, 1469, 1551
BclI	TGATCA	1 cut(s)	1504
BcnI	CCSGG	1 cut(s)	492
BcoDI	GTCTC	5 cut(s)	169, 340, 1438, 2030, 2327
BfaI	CTAG	5 cut(s)	752, 839, 1082, 1173, 1961
BfmI	CTRYAG	3 cut(s)	1653, 1812, 2074
BfoI	RGCGCY	1 cut(s)	1714
BfuAI	ACCTGC	3 cut(s)	1895, 2238, 2272
BglII	AGATCT	1 cut(s)	924
BmcAI	AGTACT	2 cut(s)	632, 1303
Bme1390I	CCNGG	6 cut(s)	492, 683, 1062, 1413, 1469, 1551
Bme18I	GGWCC	2 cut(s)	92, 1166
BmeT110I	CYCGRG	3 cut(s)	1706, 1803, 1898
BmgT120I	GGNCC	5 cut(s)	92, 590, 1055, 1166, 2347
BmiI	GGNNCC	9 cut(s)	93, 489, 749, 1024, 1282, 1372, 1594, 2092, 2348
BmrFI	CCNGG	6 cut(s)	492, 683, 1062, 1413, 1469, 1551
BmrI	ACTGGG	1 cut(s)	1825
BmsI	GCATC	3 cut(s)	438, 667, 1231
BmuI	ACTGGG	1 cut(s)	1825
BpiI	GAAGAC	1 cut(s)	2257
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BpmI	CTGGAG	5 cut(s)	84, 1044, 1371, 1533, 2109
Bpu14I	TTCGAA	1 cut(s)	2304
BpuEI	CTTGAG	2 cut(s)	364, 2219
BpuMI	CCSGG	1 cut(s)	492
BsaI	GGTCTC	2 cut(s)	2030, 2327
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	1344, 1374
Bse1I	ACTGG	5 cut(s)	1072, 1629, 1756, 1831, 2092
Bse3DI	GCAATG	3 cut(s)	1211, 1569, 1591
BseBI	CCWGG	5 cut(s)	683, 1062, 1413, 1469, 1551
BseGI	GGATG	5 cut(s)	253, 292, 366, 682, 1336
BseMI	GCAATG	3 cut(s)	1211, 1569, 1591
BseMII	CTCAG	3 cut(s)	234, 1016, 1290
BseNI	ACTGG	5 cut(s)	1072, 1629, 1756, 1831, 2092
BseRI	GAGGAG	1 cut(s)	1844
BseSI	GKGCMC	3 cut(s)	862, 987, 2004
BseXI	GCAGC	8 cut(s)	121, 158, 1550, 1648, 1826, 1882, 1922, 2091
BseYI	CCCAGC	1 cut(s)	1559
Bsh1236I	CGCG	3 cut(s)	162, 1097, 2115
Bsh1285I	CGRYCG	2 cut(s)	32, 99
BshFI	GGCC	5 cut(s)	592, 1057, 1381, 1411, 2349
BshNI	GGYRCC	2 cut(s)	1370, 1592
BsiEI	CGRYCG	2 cut(s)	32, 99
BsiHKAI	GWGCWC	3 cut(s)	987, 1213, 2004
BsiHKCI	CYCGRG	3 cut(s)	1706, 1803, 1898
BsiSI	CCGG	2 cut(s)	95, 491
BsmAI	GTCTC	5 cut(s)	169, 340, 1438, 2030, 2327
BsmBI	CGTCTC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	5 cut(s)	592, 1057, 1381, 1411, 2349
Bso31I	GGTCTC	2 cut(s)	2030, 2327
BsoBI	CYCGRG	3 cut(s)	1706, 1803, 1898
Bsp119I	TTCGAA	1 cut(s)	2304
Bsp1286I	GDGCHC	5 cut(s)	862, 987, 1213, 2004, 2095
Bsp143I	GATC	7 cut(s)	29, 924, 1133, 1423, 1494, 1504, 1957
BspACI	CCGC	7 cut(s)	35, 160, 1095, 1097, 1604, 1649, 2337
BspANI	GGCC	5 cut(s)	592, 1057, 1381, 1411, 2349
BspCNI	CTCAG	3 cut(s)	235, 1015, 1289
BspFNI	CGCG	3 cut(s)	162, 1097, 2115
BspHI	TCATGA	3 cut(s)	706, 1507, 1857
BspLI	GGNNCC	9 cut(s)	93, 489, 749, 1024, 1282, 1372, 1594, 2092, 2348
BspMAI	CTGCAG	1 cut(s)	1816
BspMI	ACCTGC	3 cut(s)	1895, 2238, 2272
BspPI	GGATC	1 cut(s)	1141
BspT104I	TTCGAA	1 cut(s)	2304
BspT107I	GGYRCC	2 cut(s)	1370, 1592
BspTNI	GGTCTC	2 cut(s)	2030, 2327
BsrDI	GCAATG	3 cut(s)	1211, 1569, 1591
BsrI	ACTGG	5 cut(s)	1072, 1629, 1756, 1831, 2092
BssMI	GATC	7 cut(s)	29, 924, 1133, 1423, 1494, 1504, 1957
BssSI	CACGAG	1 cut(s)	536
BssT1I	CCWWGG	4 cut(s)	258, 586, 1035, 1863
Bst2BI	CACGAG	1 cut(s)	536
Bst2UI	CCWGG	5 cut(s)	683, 1062, 1413, 1469, 1551
Bst6I	CTCTTC	1 cut(s)	659
BstAPI	GCANNNNNTGC	2 cut(s)	448, 1571
BstBI	TTCGAA	1 cut(s)	2304
BstC8I	GCNNGC	8 cut(s)	160, 554, 1365, 1369, 1536, 1703, 1743, 2140
BstDEI	CTNAG	5 cut(s)	243, 496, 1002, 1276, 1762
BstDSI	CCRYGG	3 cut(s)	832, 862, 1095
BstENI	CCTNNNNNAGG	2 cut(s)	1405, 2234
BstF5I	GGATG	5 cut(s)	253, 292, 366, 682, 1336
BstFNI	CGCG	3 cut(s)	162, 1097, 2115
BstH2I	RGCGCY	1 cut(s)	1714
BstHHI	GCGC	2 cut(s)	1713, 2115
BstKTI	GATC	7 cut(s)	32, 927, 1136, 1426, 1497, 1507, 1960
BstMAI	GTCTC	5 cut(s)	169, 340, 1438, 2030, 2327
BstMBI	GATC	7 cut(s)	29, 924, 1133, 1423, 1494, 1504, 1957
BstMCI	CGRYCG	2 cut(s)	32, 99
BstNI	CCWGG	5 cut(s)	683, 1062, 1413, 1469, 1551
BstNSI	RCATGY	1 cut(s)	1745
BstSCI	CCNGG	6 cut(s)	490, 681, 1060, 1411, 1467, 1549
BstSFI	CTRYAG	3 cut(s)	1653, 1812, 2074
BstSLI	GKGCMC	3 cut(s)	862, 987, 2004
BstUI	CGCG	3 cut(s)	162, 1097, 2115
BstV1I	GCAGC	8 cut(s)	121, 158, 1550, 1648, 1826, 1882, 1922, 2091
BstV2I	GAAGAC	1 cut(s)	2257
BstX2I	RGATCY	1 cut(s)	924
BstYI	RGATCY	1 cut(s)	924
BsuRI	GGCC	5 cut(s)	592, 1057, 1381, 1411, 2349
BtgI	CCRYGG	3 cut(s)	832, 862, 1095
BtsCI	GGATG	5 cut(s)	253, 292, 366, 682, 1336
BtsI	GCAGTG	1 cut(s)	2004
BtsIMutI	CAGTG	4 cut(s)	1065, 2004, 2110, 2334
BveI	ACCTGC	3 cut(s)	1895, 2238, 2272
Cac8I	GCNNGC	8 cut(s)	160, 554, 1365, 1369, 1536, 1703, 1743, 2140
CaiI	CAGNNNCTG	1 cut(s)	1067
CciI	TCATGA	3 cut(s)	706, 1507, 1857
CfoI	GCGC	2 cut(s)	1713, 2115
Cfr13I	GGNCC	5 cut(s)	92, 590, 1055, 1166, 2347
Cfr42I	CCGCGG	1 cut(s)	1098
CseI	GACGC	2 cut(s)	126, 151
CsiI	ACCWGGT	1 cut(s)	1467
Csp6I	GTAC	4 cut(s)	631, 1302, 1716, 1809
CviAII	CATG	9 cut(s)	602, 707, 973, 1144, 1508, 1730, 1742, 1858, 1891
CviQI	GTAC	4 cut(s)	631, 1302, 1716, 1809
DdeI	CTNAG	5 cut(s)	243, 496, 1002, 1276, 1762
DpnI	GATC	7 cut(s)	31, 926, 1135, 1425, 1496, 1506, 1959
DpnII	GATC	7 cut(s)	29, 924, 1133, 1423, 1494, 1504, 1957
DraI	TTTAAA	2 cut(s)	472, 934
Eam1104I	CTCTTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	659
Eco130I	CCWWGG	4 cut(s)	258, 586, 1035, 1863
Eco147I	AGGCCT	2 cut(s)	1381, 1411
Eco24I	GRGCYC	1 cut(s)	2095
Eco31I	GGTCTC	2 cut(s)	2030, 2327
Eco32I	GATATC	1 cut(s)	598
Eco47I	GGWCC	2 cut(s)	92, 1166
Eco57I	CTGAAG	1 cut(s)	2289
Eco88I	CYCGRG	3 cut(s)	1706, 1803, 1898
EcoNI	CCTNNNNNAGG	2 cut(s)	1405, 2234
EcoO109I	RGGNCCY	2 cut(s)	590, 1055
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	5 cut(s)	681, 1060, 1411, 1467, 1549
EcoRV	GATATC	1 cut(s)	598
EcoT14I	CCWWGG	4 cut(s)	258, 586, 1035, 1863
EcoT38I	GRGCYC	1 cut(s)	2095
ErhI	CCWWGG	4 cut(s)	258, 586, 1035, 1863
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	9 cut(s)	605, 710, 976, 1147, 1511, 1733, 1745, 1861, 1894
FatI	CATG	9 cut(s)	601, 706, 972, 1143, 1507, 1729, 1741, 1857, 1890
FauI	CCCGC	3 cut(s)	28, 167, 1090
FauNDI	CATATG	1 cut(s)	727
FbaI	TGATCA	1 cut(s)	1504
FblI	GTMKAC	1 cut(s)	99
FokI	GGATG	5 cut(s)	240, 299, 353, 689, 1343
FriOI	GRGCYC	1 cut(s)	2095
FspBI	CTAG	5 cut(s)	752, 839, 1082, 1173, 1961
GlaI	GCGC	2 cut(s)	1712, 2114
GsaI	CCCAGC	1 cut(s)	1563
GsuI	CTGGAG	5 cut(s)	84, 1044, 1371, 1533, 2109
HaeII	RGCGCY	1 cut(s)	1714
HaeIII	GGCC	5 cut(s)	592, 1057, 1381, 1411, 2349
HapII	CCGG	2 cut(s)	95, 491
HgaI	GACGC	2 cut(s)	126, 151
HhaI	GCGC	2 cut(s)	1713, 2115
Hin1II	CATG	9 cut(s)	605, 710, 976, 1147, 1511, 1733, 1745, 1861, 1894
Hin6I	GCGC	2 cut(s)	1711, 2113
HinP1I	GCGC	2 cut(s)	1711, 2113
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	7 cut(s)	314, 653, 997, 1103, 1546, 1733, 2051
HpaII	CCGG	2 cut(s)	95, 491
HphI	GGTGA	2 cut(s)	2210, 2327
Hpy166II	GTNNAC	7 cut(s)	22, 100, 836, 851, 985, 1622, 2002
Hpy188I	TCNGA	8 cut(s)	42, 169, 244, 333, 567, 1005, 1138, 1479
Hpy8I	GTNNAC	7 cut(s)	22, 100, 836, 851, 985, 1622, 2002
Hpy99I	CGWCG	2 cut(s)	104, 956
HpyAV	CCTTC	4 cut(s)	262, 1583, 2291, 2300
HpyF3I	CTNAG	5 cut(s)	243, 496, 1002, 1276, 1762
Hsp92II	CATG	9 cut(s)	605, 710, 976, 1147, 1511, 1733, 1745, 1861, 1894
HspAI	GCGC	2 cut(s)	1711, 2113
Ksp22I	TGATCA	1 cut(s)	1504
KspI	CCGCGG	1 cut(s)	1098
Kzo9I	GATC	7 cut(s)	29, 924, 1133, 1423, 1494, 1504, 1957
LmnI	GCTCC	6 cut(s)	358, 1022, 1040, 1216, 1867, 2090
Lsp1109I	GCAGC	8 cut(s)	121, 158, 1550, 1648, 1826, 1882, 1922, 2091
LweI	GCATC	3 cut(s)	438, 667, 1231
MabI	ACCWGGT	1 cut(s)	1467
MaeI	CTAG	5 cut(s)	752, 839, 1082, 1173, 1961
MaeIII	GTNAC	6 cut(s)	892, 1463, 1627, 1747, 1789, 1969
MalI	GATC	7 cut(s)	31, 926, 1135, 1425, 1496, 1506, 1959
MboI	GATC	7 cut(s)	29, 924, 1133, 1423, 1494, 1504, 1957
MboII	GAAGA	8 cut(s)	676, 1501, 1504, 1693, 1696, 2060, 2207, 2262
MfeI	CAATTG	1 cut(s)	1245
MflI	RGATCY	1 cut(s)	924
MhlI	GDGCHC	5 cut(s)	862, 987, 1213, 2004, 2095
MlyI	GAGTC	2 cut(s)	1540, 1742
MmeI	TCCRAC	2 cut(s)	651, 1144
MroXI	GAANNNNTTC	2 cut(s)	338, 2214
MslI	CAYNNNNRTG	2 cut(s)	1148, 2223
MspA1I	CMGCKG	3 cut(s)	1097, 1913, 2339
MspI	CCGG	2 cut(s)	95, 491
MspR9I	CCNGG	6 cut(s)	492, 683, 1062, 1413, 1469, 1551
MunI	CAATTG	1 cut(s)	1245
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	5 cut(s)	683, 1062, 1413, 1469, 1551
MvnI	CGCG	3 cut(s)	162, 1097, 2115
NciI	CCSGG	1 cut(s)	492
NdeI	CATATG	1 cut(s)	727
NdeII	GATC	7 cut(s)	29, 924, 1133, 1423, 1494, 1504, 1957
NlaIII	CATG	9 cut(s)	605, 710, 976, 1147, 1511, 1733, 1745, 1861, 1894
NlaIV	GGNNCC	9 cut(s)	93, 489, 749, 1024, 1282, 1372, 1594, 2092, 2348
NmuCI	GTSAC	3 cut(s)	1463, 1789, 1969
NspI	RCATGY	1 cut(s)	1745
NspV	TTCGAA	1 cut(s)	2304
PaeI	GCATGC	1 cut(s)	1745
PaeR7I	CTCGAG	2 cut(s)	1706, 1803
PagI	TCATGA	3 cut(s)	706, 1507, 1857
PceI	AGGCCT	2 cut(s)	1381, 1411
PcsI	WCGNNNNNNNCGW	1 cut(s)	859
PctI	GAATGC	1 cut(s)	180
PdmI	GAANNNNTTC	2 cut(s)	338, 2214
PfeI	GAWTC	5 cut(s)	314, 653, 997, 1103, 2051
PflMI	CCANNNNNTGG	2 cut(s)	484, 1067
Ple19I	CGATCG	1 cut(s)	32
PleI	GAGTC	2 cut(s)	1540, 1741
PpsI	GAGTC	2 cut(s)	1540, 1741
PshBI	ATTAAT	1 cut(s)	527
PsiI	TTATAA	1 cut(s)	1697
Psp6I	CCWGG	5 cut(s)	681, 1060, 1411, 1467, 1549
PspFI	CCCAGC	1 cut(s)	1559
PspGI	CCWGG	5 cut(s)	681, 1060, 1411, 1467, 1549
PspN4I	GGNNCC	9 cut(s)	93, 489, 749, 1024, 1282, 1372, 1594, 2092, 2348
PspPI	GGNCC	5 cut(s)	92, 590, 1055, 1166, 2347
PspXI	VCTCGAGB	2 cut(s)	1706, 1803
PstI	CTGCAG	1 cut(s)	1816
PstNI	CAGNNNCTG	1 cut(s)	1067
PsuI	RGATCY	1 cut(s)	924
PvuI	CGATCG	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	1913
RsaI	GTAC	4 cut(s)	632, 1303, 1717, 1810
RsaNI	GTAC	4 cut(s)	631, 1302, 1716, 1809
RseI	CAYNNNNRTG	2 cut(s)	1148, 2223
SacII	CCGCGG	1 cut(s)	1098
SalI	GTCGAC	1 cut(s)	98
Sau3AI	GATC	7 cut(s)	29, 924, 1133, 1423, 1494, 1504, 1957
Sau96I	GGNCC	5 cut(s)	92, 590, 1055, 1166, 2347
ScaI	AGTACT	2 cut(s)	632, 1303
SchI	GAGTC	2 cut(s)	1540, 1742
ScrFI	CCNGG	6 cut(s)	492, 683, 1062, 1413, 1469, 1551
SduI	GDGCHC	5 cut(s)	862, 987, 1213, 2004, 2095
SexAI	ACCWGGT	1 cut(s)	1467
SfaNI	GCATC	3 cut(s)	438, 667, 1231
SfcI	CTRYAG	3 cut(s)	1653, 1812, 2074
Sfr274I	CTCGAG	2 cut(s)	1706, 1803
Sfr303I	CCGCGG	1 cut(s)	1098
SfuI	TTCGAA	1 cut(s)	2304
SgrBI	CCGCGG	1 cut(s)	1098
SinI	GGWCC	2 cut(s)	92, 1166
SlaI	CTCGAG	2 cut(s)	1706, 1803
SmiMI	CAYNNNNRTG	2 cut(s)	1148, 2223
SmlI	CTYRAG	4 cut(s)	343, 1706, 1803, 2234
SmoI	CTYRAG	4 cut(s)	343, 1706, 1803, 2234
SphI	GCATGC	1 cut(s)	1745
SseBI	AGGCCT	2 cut(s)	1381, 1411
SsiI	CCGC	7 cut(s)	35, 160, 1095, 1097, 1604, 1649, 2337
SspI	AATATT	1 cut(s)	870
SspMI	CTAG	5 cut(s)	752, 839, 1082, 1173, 1961
StuI	AGGCCT	2 cut(s)	1381, 1411
StyD4I	CCNGG	6 cut(s)	490, 681, 1060, 1411, 1467, 1549
StyI	CCWWGG	4 cut(s)	258, 586, 1035, 1863
TaqI	TCGA	7 cut(s)	99, 215, 1252, 1417, 1707, 1804, 2304
TatI	WGTACW	2 cut(s)	630, 1301
TauI	GCSGC	2 cut(s)	1607, 1652
TfiI	GAWTC	5 cut(s)	314, 653, 997, 1103, 2051
TscAI	CASTG	4 cut(s)	1072, 2004, 2110, 2334
TseFI	GTSAC	3 cut(s)	1463, 1789, 1969
TseI	GCWGC	8 cut(s)	134, 146, 1538, 1636, 1814, 1870, 1910, 2079
Tsp45I	GTSAC	3 cut(s)	1463, 1789, 1969
TspDTI	ATGAA	4 cut(s)	1132, 1524, 1602, 1860
TspGWI	ACGGA	2 cut(s)	338, 1104
TspRI	CASTG	4 cut(s)	1072, 2004, 2110, 2334
Van91I	CCANNNNNTGG	2 cut(s)	484, 1067
VneI	GTGCAC	2 cut(s)	983, 2000
VpaK11BI	GGWCC	2 cut(s)	92, 1166
VspI	ATTAAT	1 cut(s)	527
XagI	CCTNNNNNAGG	2 cut(s)	1405, 2234
XapI	RAATTY	5 cut(s)	238, 273, 335, 977, 1029
XbaI	TCTAGA	2 cut(s)	1172, 1960
XceI	RCATGY	1 cut(s)	1745
XhoI	CTCGAG	2 cut(s)	1706, 1803
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	2 cut(s)	338, 2214
XspI	CTAG	5 cut(s)	752, 839, 1082, 1173, 1961
ZrmI	AGTACT	2 cut(s)	632, 1303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.