Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002584

Physical Location & Seq

Genomic Coordinates Forward (+)

50469567 .. 50474934

Gene Structure 5368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0374300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2424 bp

ATGTTCGCAGCGTCCACCAGTATCTATACCCCCACCACCATCGCTCTCCTCCCTCCCTCCTCCGCTGATCGCAAATTAGCTTCTTTATCCACCGCCACCGCCACCGCCAACAACAGCACGCGCACGCGCCGCCGTCCAATCACCAAATGCCGCGTGTCCTCCTCGCCCCTTTCTCTAAACCCTAAACCCTCCTCTTCCAACCACCTCCTCAAAAGCCTCGCCAAAACATTCGCCGGCGCCACCGCCACCGCCGTCACCCTCATCCTAAACCTAACCAATTTCCCCGCCTTCATCGGCGGAGGAGGTCATGGTTCCAATGGCGGCGGCGGCGGCGGAGGAGGAGGGTTTTGGAGGAGGCTGTTTCGCCTGCATGCGGCGAAAGCAGACGAGCCGAACGAGTCGTGGGACTCTCACGGCTTGCCGGCCGACATTGTGGTCCAGCTCAGCAGGCTCAGCGGCTTCAAGAAGTACAAGGTCTCGGAGGTCTTGTTCTTCGACCGGAAGCGGTGGAGCACCGTCGGCGGCGACGACTCCATCTCCGACATGCTGTCCCTCAGGCCCGGCGGCGTCTACACCAAGGCCGAGCTCGAGAACGAGCTCCAATCCCTGGCCAATTGCGGAATGTTCGAGAAGGTCGACTTCGAAGGCAAGACCAAGCCGGACGGCACCCTCGCCGTCACCGTCTCGTTCACGGAGAGCACGTGGCAGGAGGCGGAGAGGTTCCGGTGCATTAACGTGGGCCTGATGGCGCAGCCCAAGCCCATTGAGATGGACCCGGACATGACCGAGAGGGAGAAGCTCCAGTATTTCAGGAACCAGGAGAGGGATTACAAGAGGAGGATGGAGAGGGGCAGGCCGTGTTTGCTGCCGGCTCCGGTGCAGAGGGAGGTGTTGCAGATGGTGAGAGAACATGGGAAGGTGAGTGCTAGGGTGTTGCACAAGATTCAGGCCCGGGTTCTCAAGTGGTACCAAGATGAGGGGTATCTGTGTGCCAATGTTGTCAACTTTGGGAATTTGAATACAAAGGAGGTTGTGTGTGAGGTGGTGGAGGGCGATATTACTCGGCTGGTTATTCAGTTCCGGGATAAGCTTGGCAATGTTGTAGAGGGGAAGACTCAGAGTCTTGTGGTCAAGAGAGAATTGCCCAAACAGCTTCGACCAGGTAATGCGTTTAACATAGAAGCCGGGAAACAAGCTCTGAGGAACTTAACCTCCCTGGGATTGTTTTCAAACATTGAAGTGAATCCAGTACCGGACGAGAAGAATGAAGGAGGGATAGTTGTTGAAATAAATCTTAAAGAACAAGAGCACAAGACTGCTGAAGTAAGCACGGAATGGAACATTGTTCGTGGACATGGAGGCTATCCCACTTTGGCTTCACTGCTACCCGGTGGAACTGTTACATTTCAACATCGGAATATCAACGGATTGAATAGGTCTCTTATTGGTTCAGTAAGCAGTAGCAACCTTTACAACCCACAGCTTCAGGACGATCTTGAATTTAAGCTTGAGTACATCCATCCATATCTGGATGGTCTGGACAATCCCTGCGATCGCACTCTCCGGGTAAGCTGTTTTAATGGTCGAAAATTGAGTCCAGTCTTCACTGGTGGGCCAGGGGATGATGAAGTTCCCCCAGTATGGGTTGATCGAGCTGGCATGAAGGCTAATATAACAGAGAATTTGAGCCGTCAGAGCAAATTCACTTATGGTCTTGTGATGGAAGAGATAACCACACGTGATGAACAAAATCATATATGTTCAAATGGCCAAAGAGTGCTGCCCAGTGGAGGTGTCAGTGAAGATGGACCTCCAACAACTCTCAGCGGTACTGGCATTGACCATGTGGCATTTTTACAGTCAAATATCACACATGACAACACCAAGTTTGTGAATGGAACCTTAGTTGGTGAGAGGAATGTGTTTCAGGTTGACCAAGGCCTTGGCATTGGCAGCAAGTTTCCATTCTTCAACCGCCACCAGTTATCATTAACAAGATTTTTCCAGCTGAAGGAAGTGGAGGAAGGTGCTGGCAAACCACCACCACCTGTTCTTGTACTTCATGGTCACTATGGTGGCTGTGTTGGAGACCTTCCAAGTTATGATGCATTTACCCTTGGGGGTCCATATTCTGTGAGAGGTTACAACATGGGTGAGATAGGCGCCGCTAGACATATCCTTGAGCTTGCAGCTGAGCTACGGATACCGGTTAAAGGAAAAAATGTATATGCATTTGTAGAACATGGCAATGATCTCGGAAGTTCGAAGGATGTCAAGGGTAACCCAACAGAGGTATACAGGCGAGTGGGTCATGGGTCATCATATGGTGTTGGTGTCAAGTTAGGTCCAGTAAGAGTGGAATATGTTGTGGATCACAACTCTGGCACAGGTTTAACATTCTTCCGATTTGGTGACCGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

807

Amino Acids

88.61

Weight (kDa)

8.68

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POTRA1_3_Toc75	PF25282	141 - 232	1.8e-30	Toc75-like, POTRA domain
POTRA2_Toc75	PF25280	241 - 352	2.1e-54	Toc75-like, second POTRA domain
POTRA1_3_Toc75	PF25282	353 - 434	3.2e-25	Toc75-like, POTRA domain
Omp85	PF01103	473 - 788	1.2e-17	Omp85 superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07510 AT2G29080
fragaria_vesca	FvH4_3g36790 FvH4_3g36790 FvH4_3g36790 FvH4_6g13480 FvH4_6g13480 FvH4_6g13480
malus_domestica	MD03G1088300.v1.1 MD03G1088400.v1.1 MD04G1130900.v1.1 MD11G1097400.v1.1 MD12G1144000.v1.1
prunus_persica	Prupe.6G072600_v2.0.a1 Prupe.6G257400_v2.0.a1 Prupe.6G257400_v2.0.a1
pyrus_communis	pycom03g06980 pycom03g07000 pycom04g11920 pycom11g08210 pycom12g13860
rosa_chinensis	RchiOBHm_Chr3g0466351 RchiOBHm_Chr5g0065851
rosa_laevigata	RLG00000024582 RLG00000035821
rosa_multiflora	Rmu_sc0003480.1_g000012 Rmu_sc0042868.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015310 Rroxscaffold_6G00414550
rosa_rugosa	Rorug03G0081200 Rorug05G0374100 Rorug05G0374200 Rorug05G0374300
rosa_samantha	Rh3BG148900 Rh3DG149600 Rh5BG449200 Rh5CG471400 Rh5DG462800
rosa_wichuraiana	Rw3G012050 Rw5G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	434
Acc65I	GGTACC	1 cut(s)	966
AccB1I	GGYRCC	4 cut(s)	236, 665, 966, 2162
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccI	GTMKAC	3 cut(s)	570, 636, 2295
AccII	CGCG	3 cut(s)	121, 127, 153
AclWI	GGATC	1 cut(s)	2379
AcoI	YGGCCR	3 cut(s)	423, 609, 1768
AcsI	RAATTY	4 cut(s)	1012, 1499, 1681, 1700
AcuI	CTGAAG	3 cut(s)	1341, 1469, 2030
AcvI	CACGTG	2 cut(s)	702, 1739
AcyI	GRCGYC	3 cut(s)	237, 567, 2163
AfaI	GTAC	6 cut(s)	470, 968, 1251, 1514, 1831, 2058
AflIII	ACRYGT	1 cut(s)	1736
AgeI	ACCGGT	1 cut(s)	2206
AhdI	GACNNNNNGTC	2 cut(s)	547, 1119
AjnI	CCWGG	5 cut(s)	606, 816, 1159, 1215, 1615
AleI	CACNNNNGTG	1 cut(s)	2073
AloI	GAACNNNNNNTCC	4 cut(s)	473, 505, 1196, 1228
Alw21I	GWGCWC	5 cut(s)	515, 588, 600, 701, 1311
Alw26I	GTCTC	4 cut(s)	481, 688, 1443, 2082
AlwI	GGATC	1 cut(s)	2379
Ama87I	CYCGRG	2 cut(s)	587, 951
ApeKI	GCWGC	6 cut(s)	8, 751, 865, 1780, 1953, 2189
ApoI	RAATTY	4 cut(s)	1012, 1499, 1681, 1700
ArsI	GACNNNNNNTTYG	2 cut(s)	1579, 1611
AsiGI	ACCGGT	1 cut(s)	2206
AsiSI	GCGATCGC	1 cut(s)	1555
Asp718I	GGTACC	1 cut(s)	966
AspLEI	GCGC	5 cut(s)	123, 129, 239, 751, 2165
AspS9I	GGNCC	9 cut(s)	436, 558, 739, 772, 949, 1613, 1808, 2123, 2345
AsuC2I	CCSGG	8 cut(s)	561, 776, 952, 953, 1082, 1186, 1389, 1565
AsuHPI	GGTGA	8 cut(s)	133, 247, 670, 913, 931, 1922, 2165, 2423
AsuII	TTCGAA	2 cut(s)	642, 2264
AvaI	CYCGRG	2 cut(s)	587, 951
AvaII	GGWCC	5 cut(s)	436, 772, 1808, 2123, 2345
AxyI	CCTNAGG	1 cut(s)	554
BalI	TGGCCA	2 cut(s)	611, 1770
BanI	GGYRCC	4 cut(s)	236, 665, 966, 2162
BanII	GRGCYC	2 cut(s)	588, 600
BbrPI	CACGTG	2 cut(s)	702, 1739
BbsI	GAAGAC	2 cut(s)	1118, 1594
Bbv12I	GWGCWC	5 cut(s)	515, 588, 600, 701, 1311
BbvI	GCAGC	6 cut(s)	20, 763, 852, 1767, 1965, 2201
BceAI	ACGGC	7 cut(s)	117, 236, 430, 659, 679, 841, 1674
BcgI	CGANNNNNNTGC	2 cut(s)	2236, 2270
BciT130I	CCWGG	5 cut(s)	608, 818, 1161, 1217, 1617
BciVI	GTATCC	1 cut(s)	2196
BcnI	CCSGG	8 cut(s)	561, 776, 952, 953, 1082, 1186, 1389, 1565
BcoDI	GTCTC	4 cut(s)	481, 688, 1443, 2082
BfaI	CTAG	2 cut(s)	927, 2169
BfoI	RGCGCY	2 cut(s)	240, 2166
BfuI	GTATCC	1 cut(s)	2196
BlpI	GCTNAGC	3 cut(s)	443, 452, 2193
Bme18I	GGWCC	5 cut(s)	436, 772, 1808, 2123, 2345
BmeRI	GACNNNNNGTC	2 cut(s)	547, 1119
BmeT110I	CYCGRG	2 cut(s)	587, 951
BmgT120I	GGNCC	9 cut(s)	436, 558, 739, 772, 949, 1613, 1808, 2123, 2345
BmrI	ACTGGG	2 cut(s)	1631, 1779
BmsI	GCATC	1 cut(s)	2095
BmuI	ACTGGG	2 cut(s)	1631, 1779
BpiI	GAAGAC	2 cut(s)	1118, 1594
BpmI	CTGGAG	1 cut(s)	785
Bpu1102I	GCTNAGC	3 cut(s)	443, 452, 2193
Bpu14I	TTCGAA	2 cut(s)	642, 2264
BpuEI	CTTGAG	3 cut(s)	944, 1529, 2201
BpuMI	CCSGG	8 cut(s)	561, 776, 952, 953, 1082, 1186, 1389, 1565
BsaAI	YACGTR	2 cut(s)	702, 1739
BsaHI	GRCGYC	3 cut(s)	237, 567, 2163
BsaI	GGTCTC	3 cut(s)	481, 1443, 2082
BsaJI	CCNNGG	9 cut(s)	576, 606, 951, 1215, 1216, 1616, 1936, 1942, 2116
BsaWI	WCCGGW	5 cut(s)	498, 723, 874, 1252, 2206
Bse118I	RCCGGY	4 cut(s)	233, 421, 868, 2206
Bse21I	CCTNAGG	1 cut(s)	554
Bse3DI	GCAATG	2 cut(s)	1102, 2254
BseBI	CCWGG	5 cut(s)	608, 818, 1161, 1217, 1617
BseDI	CCNNGG	9 cut(s)	576, 606, 951, 1215, 1216, 1616, 1936, 1942, 2116
BseGI	GGATG	7 cut(s)	261, 846, 1515, 1519, 1537, 1627, 2275
BseMI	GCAATG	2 cut(s)	1102, 2254
BseMII	CTCAG	7 cut(s)	457, 466, 568, 1130, 1190, 1837, 2184
BseX3I	CGGCCG	1 cut(s)	423
BseXI	GCAGC	6 cut(s)	20, 763, 852, 1767, 1965, 2201
BsgI	GTGCAG	1 cut(s)	899
Bsh1236I	CGCG	3 cut(s)	121, 127, 153
Bsh1285I	CGRYCG	3 cut(s)	426, 499, 1555
BshNI	GGYRCC	4 cut(s)	236, 665, 966, 2162
BshTI	ACCGGT	1 cut(s)	2206
BsiEI	CGRYCG	3 cut(s)	426, 499, 1555
BsiHKAI	GWGCWC	5 cut(s)	515, 588, 600, 701, 1311
BsiHKCI	CYCGRG	2 cut(s)	587, 951
BslFI	GGGAC	2 cut(s)	419, 535
BsmAI	GTCTC	4 cut(s)	481, 688, 1443, 2082
BsmBI	CGTCTC	1 cut(s)	688
BsmFI	GGGAC	2 cut(s)	419, 535
Bso31I	GGTCTC	3 cut(s)	481, 1443, 2082
BsoBI	CYCGRG	2 cut(s)	587, 951
Bsp119I	TTCGAA	2 cut(s)	642, 2264
Bsp1286I	GDGCHC	5 cut(s)	515, 588, 600, 701, 1311
Bsp143I	GATC	6 cut(s)	67, 1492, 1552, 1648, 2251, 2371
Bsp1720I	GCTNAGC	3 cut(s)	443, 452, 2193
BspCNI	CTCAG	7 cut(s)	456, 465, 567, 1129, 1191, 1836, 2185
BspFNI	CGCG	3 cut(s)	121, 127, 153
BspPI	GGATC	1 cut(s)	2379
BspT104I	TTCGAA	2 cut(s)	642, 2264
BspT107I	GGYRCC	4 cut(s)	236, 665, 966, 2162
BspTNI	GGTCTC	3 cut(s)	481, 1443, 2082
BsrDI	GCAATG	2 cut(s)	1102, 2254
BsrFI	RCCGGY	4 cut(s)	233, 421, 868, 2206
BssAI	RCCGGY	4 cut(s)	233, 421, 868, 2206
BssECI	CCNNGG	9 cut(s)	576, 606, 951, 1215, 1216, 1616, 1936, 1942, 2116
BssMI	GATC	6 cut(s)	67, 1492, 1552, 1648, 2251, 2371
BssNAI	GTATAC	1 cut(s)	2296
BssNI	GRCGYC	3 cut(s)	237, 567, 2163
BssT1I	CCWWGG	4 cut(s)	576, 1936, 1942, 2116
Bst1107I	GTATAC	1 cut(s)	2296
Bst2UI	CCWGG	5 cut(s)	608, 818, 1161, 1217, 1617
Bst4CI	ACNGT	4 cut(s)	517, 682, 1399, 1860
Bst6I	CTCTTC	2 cut(s)	199, 1719
BstACI	GRCGYC	3 cut(s)	237, 567, 2163
BstBAI	YACGTR	2 cut(s)	702, 1739
BstBI	TTCGAA	2 cut(s)	642, 2264
BstDEI	CTNAG	8 cut(s)	443, 452, 554, 1116, 1199, 1823, 1903, 2193
BstEII	GGTNACC	2 cut(s)	2279, 2411
BstF5I	GGATG	7 cut(s)	261, 846, 1515, 1519, 1537, 1627, 2275
BstFNI	CGCG	3 cut(s)	121, 127, 153
BstH2I	RGCGCY	2 cut(s)	240, 2166
BstHHI	GCGC	5 cut(s)	123, 129, 239, 751, 2165
BstKTI	GATC	6 cut(s)	70, 1495, 1555, 1651, 2254, 2374
BstMAI	GTCTC	4 cut(s)	481, 688, 1443, 2082
BstMBI	GATC	6 cut(s)	67, 1492, 1552, 1648, 2251, 2371
BstMCI	CGRYCG	3 cut(s)	426, 499, 1555
BstNI	CCWGG	5 cut(s)	608, 818, 1161, 1217, 1617
BstNSI	RCATGY	2 cut(s)	374, 547
BstPI	GGTNACC	2 cut(s)	2279, 2411
BstUI	CGCG	3 cut(s)	121, 127, 153
BstV1I	GCAGC	6 cut(s)	20, 763, 852, 1767, 1965, 2201
BstV2I	GAAGAC	2 cut(s)	1118, 1594
BstXI	CCANNNNNNTGG	2 cut(s)	769, 1943
BstZ17I	GTATAC	1 cut(s)	2296
BstZI	CGGCCG	1 cut(s)	423
Bsu36I	CCTNAGG	1 cut(s)	554
BsuI	GTATCC	1 cut(s)	2196
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	7 cut(s)	261, 846, 1515, 1519, 1537, 1627, 2275
BtsI	GCAGTG	1 cut(s)	1379
BtsIMutI	CAGTG	4 cut(s)	1379, 1605, 1792, 1804
CfoI	GCGC	5 cut(s)	123, 129, 239, 751, 2165
Cfr10I	RCCGGY	4 cut(s)	233, 421, 868, 2206
Cfr13I	GGNCC	9 cut(s)	436, 558, 739, 772, 949, 1613, 1808, 2123, 2345
Cfr9I	CCCGGG	1 cut(s)	951
CseI	GACGC	1 cut(s)	556
CsiI	ACCWGGT	1 cut(s)	1159
Csp6I	GTAC	6 cut(s)	469, 967, 1250, 1513, 1830, 2057
CspAI	ACCGGT	1 cut(s)	2206
CviQI	GTAC	6 cut(s)	469, 967, 1250, 1513, 1830, 2057
DdeI	CTNAG	8 cut(s)	443, 452, 554, 1116, 1199, 1823, 1903, 2193
DinI	GGCGCC	2 cut(s)	238, 2164
DpnI	GATC	6 cut(s)	69, 1494, 1554, 1650, 2253, 2373
DpnII	GATC	6 cut(s)	67, 1492, 1552, 1648, 2251, 2371
DrdI	GACNNNNNNGTC	1 cut(s)	434
DriI	GACNNNNNGTC	2 cut(s)	547, 1119
DseDI	GACNNNNNNGTC	1 cut(s)	434
EaeI	YGGCCR	3 cut(s)	423, 609, 1768
EagI	CGGCCG	1 cut(s)	423
Eam1104I	CTCTTC	2 cut(s)	199, 1719
Eam1105I	GACNNNNNGTC	2 cut(s)	547, 1119
EarI	CTCTTC	2 cut(s)	199, 1719
EciI	GGCGGA	3 cut(s)	312, 348, 728
Ecl136II	GAGCTC	2 cut(s)	586, 598
EclXI	CGGCCG	1 cut(s)	423
Eco130I	CCWWGG	4 cut(s)	576, 1936, 1942, 2116
Eco147I	AGGCCT	1 cut(s)	1941
Eco24I	GRGCYC	2 cut(s)	588, 600
Eco31I	GGTCTC	3 cut(s)	481, 1443, 2082
Eco47I	GGWCC	5 cut(s)	436, 772, 1808, 2123, 2345
Eco52I	CGGCCG	1 cut(s)	423
Eco53kI	GAGCTC	2 cut(s)	586, 598
Eco57I	CTGAAG	3 cut(s)	1341, 1469, 2030
Eco72I	CACGTG	2 cut(s)	702, 1739
Eco81I	CCTNAGG	1 cut(s)	554
Eco88I	CYCGRG	2 cut(s)	587, 951
Eco91I	GGTNACC	2 cut(s)	2279, 2411
EcoICRI	GAGCTC	2 cut(s)	586, 598
EcoO65I	GGTNACC	2 cut(s)	2279, 2411
EcoRII	CCWGG	5 cut(s)	606, 816, 1159, 1215, 1615
EcoT14I	CCWWGG	4 cut(s)	576, 1936, 1942, 2116
EcoT22I	ATGCAT	2 cut(s)	2110, 2233
EcoT38I	GRGCYC	2 cut(s)	588, 600
EgeI	GGCGCC	2 cut(s)	238, 2164
EheI	GGCGCC	2 cut(s)	238, 2164
ErhI	CCWWGG	4 cut(s)	576, 1936, 1942, 2116
Esp3I	CGTCTC	1 cut(s)	688
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FaqI	GGGAC	2 cut(s)	419, 535
FauI	CCCGC	1 cut(s)	292
FauNDI	CATATG	1 cut(s)	2323
FblI	GTMKAC	3 cut(s)	570, 636, 2295
FokI	GGATG	7 cut(s)	248, 853, 1502, 1506, 1544, 1634, 2282
FriOI	GRGCYC	2 cut(s)	588, 600
FspBI	CTAG	2 cut(s)	927, 2169
GlaI	GCGC	5 cut(s)	122, 128, 238, 750, 2164
GsuI	CTGGAG	1 cut(s)	785
HaeII	RGCGCY	2 cut(s)	240, 2166
HgaI	GACGC	1 cut(s)	556
HhaI	GCGC	5 cut(s)	123, 129, 239, 751, 2165
Hin1I	GRCGYC	3 cut(s)	237, 567, 2163
Hin6I	GCGC	5 cut(s)	121, 127, 237, 749, 2163
HinP1I	GCGC	5 cut(s)	121, 127, 237, 749, 2163
HincII	GTYRAC	3 cut(s)	637, 1003, 1933
HindII	GTYRAC	3 cut(s)	637, 1003, 1933
HindIII	AAGCTT	2 cut(s)	1088, 1505
HinfI	GANTC	8 cut(s)	398, 407, 530, 943, 1114, 1120, 1243, 1594
HphI	GGTGA	8 cut(s)	133, 247, 670, 913, 931, 1922, 2165, 2423
Hpy166II	GTNNAC	8 cut(s)	15, 571, 637, 690, 1003, 1352, 1933, 2296
Hpy188I	TCNGA	8 cut(s)	481, 541, 1119, 1200, 1416, 1695, 2258, 2405
Hpy188III	TCNNGA	9 cut(s)	463, 589, 628, 811, 1132, 1487, 1496, 1529, 1538
Hpy8I	GTNNAC	8 cut(s)	15, 571, 637, 690, 1003, 1352, 1933, 2296
Hpy99I	CGWCG	2 cut(s)	521, 530
HpyCH4III	ACNGT	4 cut(s)	517, 682, 1399, 1860
HpyCH4IV	ACGT	3 cut(s)	701, 735, 1738
HpyCH4V	TGCA	8 cut(s)	370, 729, 880, 895, 937, 2108, 2189, 2231
HpyF3I	CTNAG	8 cut(s)	443, 452, 554, 1116, 1199, 1823, 1903, 2193
HpySE526I	ACGT	3 cut(s)	701, 735, 1738
Hsp92I	GRCGYC	3 cut(s)	237, 567, 2163
HspAI	GCGC	5 cut(s)	121, 127, 237, 749, 2163
KasI	GGCGCC	2 cut(s)	236, 2162
KpnI	GGTACC	1 cut(s)	970
KroI	GCCGGC	3 cut(s)	233, 421, 868
KroNI	GCCGGC	3 cut(s)	235, 423, 870
Kzo9I	GATC	6 cut(s)	67, 1492, 1552, 1648, 2251, 2371
LmnI	GCTCC	4 cut(s)	510, 603, 804, 877
Lsp1109I	GCAGC	6 cut(s)	20, 763, 852, 1767, 1965, 2201
LweI	GCATC	1 cut(s)	2095
MabI	ACCWGGT	1 cut(s)	1159
MaeI	CTAG	2 cut(s)	927, 2169
MaeII	ACGT	3 cut(s)	701, 735, 1738
MaeIII	GTNAC	7 cut(s)	253, 676, 1399, 2066, 2141, 2279, 2411
MalI	GATC	6 cut(s)	69, 1494, 1554, 1650, 2253, 2373
MboI	GATC	6 cut(s)	67, 1492, 1552, 1648, 2251, 2371
MboII	GAAGA	9 cut(s)	186, 484, 1123, 1273, 1594, 1736, 1814, 1960, 2392
MfeI	CAATTG	1 cut(s)	613
MhlI	GDGCHC	5 cut(s)	515, 588, 600, 701, 1311
MlsI	TGGCCA	2 cut(s)	611, 1770
MluCI	AATT	9 cut(s)	74, 277, 613, 1012, 1139, 1499, 1589, 1681, 1700
MluNI	TGGCCA	2 cut(s)	611, 1770
Mly113I	GGCGCC	2 cut(s)	237, 2163
MlyI	GAGTC	6 cut(s)	401, 407, 524, 1108, 1129, 1603
MmeI	TCCRAC	4 cut(s)	222, 564, 1838, 2065
Mox20I	TGGCCA	2 cut(s)	611, 1770
Mph1103I	ATGCAT	2 cut(s)	2110, 2233
MreI	CGCCGGCG	1 cut(s)	233
MroNI	GCCGGC	3 cut(s)	233, 421, 868
MscI	TGGCCA	2 cut(s)	611, 1770
MseI	TTAA	9 cut(s)	732, 1173, 1208, 1296, 1503, 1578, 1991, 2211, 2393
MslI	CAYNNNNRTG	5 cut(s)	734, 767, 1238, 2073, 2247
Msp20I	TGGCCA	2 cut(s)	611, 1770
MspA1I	CMGCKG	5 cut(s)	65, 456, 1827, 2008, 2192
MunI	CAATTG	1 cut(s)	613
MvaI	CCWGG	5 cut(s)	608, 818, 1161, 1217, 1617
MvnI	CGCG	3 cut(s)	121, 127, 153
NaeI	GCCGGC	3 cut(s)	235, 423, 870
NarI	GGCGCC	2 cut(s)	237, 2163
NciI	CCSGG	8 cut(s)	561, 776, 952, 953, 1082, 1186, 1389, 1565
NdeI	CATATG	1 cut(s)	2323
NdeII	GATC	6 cut(s)	67, 1492, 1552, 1648, 2251, 2371
NgoMIV	GCCGGC	3 cut(s)	233, 421, 868
NmeAIII	GCCGAG	2 cut(s)	607, 1042
NmuCI	GTSAC	4 cut(s)	253, 676, 2066, 2411
NsiI	ATGCAT	2 cut(s)	2110, 2233
NspI	RCATGY	2 cut(s)	374, 547
NspV	TTCGAA	2 cut(s)	642, 2264
OliI	CACNNNNGTG	1 cut(s)	2073
PaeI	GCATGC	1 cut(s)	374
PaeR7I	CTCGAG	1 cut(s)	587
PasI	CCCWGGG	1 cut(s)	1216
PceI	AGGCCT	1 cut(s)	1941
PcsI	WCGNNNNNNNCGW	5 cut(s)	393, 525, 633, 678, 698
PdiI	GCCGGC	3 cut(s)	235, 423, 870
PfeI	GAWTC	2 cut(s)	943, 1243
PflMI	CCANNNNNTGG	1 cut(s)	607
PfoI	TCCNGGA	1 cut(s)	1080
PinAI	ACCGGT	1 cut(s)	2206
Ple19I	CGATCG	1 cut(s)	1555
PleI	GAGTC	6 cut(s)	401, 406, 524, 1108, 1128, 1602
PluTI	GGCGCC	2 cut(s)	240, 2166
PmaCI	CACGTG	2 cut(s)	702, 1739
PmlI	CACGTG	2 cut(s)	702, 1739
PpsI	GAGTC	6 cut(s)	401, 406, 524, 1108, 1128, 1602
Ppu21I	YACGTR	2 cut(s)	702, 1739
Psp124BI	GAGCTC	2 cut(s)	588, 600
Psp6I	CCWGG	5 cut(s)	606, 816, 1159, 1215, 1615
PspCI	CACGTG	2 cut(s)	702, 1739
PspEI	GGTNACC	2 cut(s)	2279, 2411
PspGI	CCWGG	5 cut(s)	606, 816, 1159, 1215, 1615
PspPI	GGNCC	9 cut(s)	436, 558, 739, 772, 949, 1613, 1808, 2123, 2345
PvuI	CGATCG	1 cut(s)	1555
PvuII	CAGCTG	2 cut(s)	2008, 2192
RgaI	GCGATCGC	1 cut(s)	1555
RsaI	GTAC	6 cut(s)	470, 968, 1251, 1514, 1831, 2058
RsaNI	GTAC	6 cut(s)	469, 967, 1250, 1513, 1830, 2057
RseI	CAYNNNNRTG	5 cut(s)	734, 767, 1238, 2073, 2247
SacI	GAGCTC	2 cut(s)	588, 600
SalI	GTCGAC	1 cut(s)	635
SaqAI	TTAA	9 cut(s)	732, 1173, 1208, 1296, 1503, 1578, 1991, 2211, 2393
Sau3AI	GATC	6 cut(s)	67, 1492, 1552, 1648, 2251, 2371
Sau96I	GGNCC	9 cut(s)	436, 558, 739, 772, 949, 1613, 1808, 2123, 2345
SchI	GAGTC	6 cut(s)	401, 407, 524, 1108, 1129, 1603
SduI	GDGCHC	5 cut(s)	515, 588, 600, 701, 1311
SexAI	ACCWGGT	1 cut(s)	1159
SfaAI	GCGATCGC	1 cut(s)	1555
SfaNI	GCATC	1 cut(s)	2095
SfoI	GGCGCC	2 cut(s)	238, 2164
Sfr274I	CTCGAG	1 cut(s)	587
SfuI	TTCGAA	2 cut(s)	642, 2264
SgfI	GCGATCGC	1 cut(s)	1555
SgrAI	CRCCGGYG	1 cut(s)	233
SinI	GGWCC	5 cut(s)	436, 772, 1808, 2123, 2345
SlaI	CTCGAG	1 cut(s)	587
SmaI	CCCGGG	1 cut(s)	953
SmiMI	CAYNNNNRTG	5 cut(s)	734, 767, 1238, 2073, 2247
SmlI	CTYRAG	4 cut(s)	587, 959, 1508, 2180
SmoI	CTYRAG	4 cut(s)	587, 959, 1508, 2180
SphI	GCATGC	1 cut(s)	374
Sse9I	AATT	9 cut(s)	74, 277, 613, 1012, 1139, 1499, 1589, 1681, 1700
SseBI	AGGCCT	1 cut(s)	1941
SspDI	GGCGCC	2 cut(s)	236, 2162
SspMI	CTAG	2 cut(s)	927, 2169
SstI	GAGCTC	2 cut(s)	588, 600
StuI	AGGCCT	1 cut(s)	1941
StyI	CCWWGG	4 cut(s)	576, 1936, 1942, 2116
TaaI	ACNGT	4 cut(s)	517, 682, 1399, 1860
TaiI	ACGT	3 cut(s)	704, 738, 1741
TaqI	TCGA	9 cut(s)	495, 588, 627, 636, 642, 1156, 1585, 1651, 2264
TaqII	GACCGA	1 cut(s)	800
TasI	AATT	9 cut(s)	74, 277, 613, 1012, 1139, 1499, 1589, 1681, 1700
TatI	WGTACW	3 cut(s)	468, 1512, 2056
TfiI	GAWTC	2 cut(s)	943, 1243
Tru1I	TTAA	9 cut(s)	732, 1173, 1208, 1296, 1503, 1578, 1991, 2211, 2393
Tru9I	TTAA	9 cut(s)	732, 1173, 1208, 1296, 1503, 1578, 1991, 2211, 2393
TscAI	CASTG	4 cut(s)	1386, 1612, 1792, 1804
TseFI	GTSAC	4 cut(s)	253, 676, 2066, 2411
TseI	GCWGC	6 cut(s)	8, 751, 865, 1780, 1953, 2189
Tsp45I	GTSAC	4 cut(s)	253, 676, 2066, 2411
TspDTI	ATGAA	6 cut(s)	280, 1281, 1641, 1676, 1758, 2051
TspGWI	ACGGA	4 cut(s)	707, 1346, 1440, 2215
TspMI	CCCGGG	1 cut(s)	951
TspRI	CASTG	4 cut(s)	1386, 1612, 1792, 1804
Van91I	CCANNNNNTGG	1 cut(s)	607
VpaK11BI	GGWCC	5 cut(s)	436, 772, 1808, 2123, 2345
XapI	RAATTY	4 cut(s)	1012, 1499, 1681, 1700
XceI	RCATGY	2 cut(s)	374, 547
XhoI	CTCGAG	1 cut(s)	587
XmaI	CCCGGG	1 cut(s)	951
XmiI	GTMKAC	3 cut(s)	570, 636, 2295
XspI	CTAG	2 cut(s)	927, 2169
Zsp2I	ATGCAT	2 cut(s)	2110, 2233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.