AT2G30130

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002494
Physical Location & Seq
Forward (+)
12868461 .. 12870045
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30130.1

Sequence Viewer

Length: 582 bp
ATGGGCGGTCCCGGATCATCACCATGTGCTTCGTGTAAGCTTCTTCGACGACGATGTGCAAAAGATTGCATCTTCGCACCTTATTTTCCTCCTGACGATCCTCACAAATTCGCCATTGTTCATAAGGTCTTTGGTGCCAGCAACGTCAGCAAAATGTTGCAGGAGCTACCAGTTCATCAAAGAGCTGACGCGGTGAATAGTCTGGTTTTTGAAGCAAACGCAAGAGTAAGAGATCCGGTCTACGGCTGCGTAGGAGCAATCTCCTACTTACAAAACCAAGTCTCGCAGCTTCAGATGCAACTAGCAGTGGCTCAAGCCGAGATTCTTTGCATTCAGATGCAAAATGAGCCAACCTTACAGTCTCATCATCAAGTACTTGAACTAGACCAAGACCACAAAGCTCTCTTACTAAACAACAACAACATCAATAACTGCAACACCAACAACAACAATAACAACTTTGGTTATGCCATGTCTTCTGGACAGTTCAACTCTAACTTTGCCTCACCAAGCAGCATAATGCAAATGCAGATGCAAATGCAAATGCAAGACCCTCTTAAGCAAGAATCTCTTTGGACTTAA

Protein Analysis

193

Amino Acids

21.53

Weight (kDa)

6.57

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 8 - 105 1.3e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 134
AccI GTMKAC 1 cut(s) 240
AccII CGCG 1 cut(s) 191
AciI CCGC 2 cut(s) 6, 191
AclWI GGATC 3 cut(s) 22, 92, 227
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 275
AdeI CACNNNGTG 1 cut(s) 26
AfaI GTAC 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 242
AflII CTTAAG 1 cut(s) 557
AgsI TTSAA 3 cut(s) 212, 380, 490
AluBI AGCT 5 cut(s) 40, 166, 185, 289, 401
AluI AGCT 5 cut(s) 40, 166, 185, 289, 401
Alw26I GTCTC 2 cut(s) 286, 366
AlwI GGATC 3 cut(s) 22, 92, 227
ApeKI GCWGC 3 cut(s) 246, 286, 513
ApoI RAATTY 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 3 cut(s) 12, 205, 498
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 3 cut(s) 233, 298, 525
BceAI ACGGC 1 cut(s) 259
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 2 cut(s) 286, 366
BfaI CTAG 2 cut(s) 302, 383
BfrI CTTAAG 1 cut(s) 557
BisI GCNGC 3 cut(s) 247, 287, 514
BlsI GCNGC 3 cut(s) 248, 288, 515
BmcAI AGTACT 1 cut(s) 375
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 10, 136
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 4 cut(s) 78, 285, 327, 522
BpiI GAAGAC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 170
BseXI GCAGC 3 cut(s) 233, 298, 525
Bsh1236I CGCG 1 cut(s) 191
BshNI GGYRCC 1 cut(s) 134
BsiSI CCGG 2 cut(s) 12, 236
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 2 cut(s) 286, 366
BsmI GAATGC 1 cut(s) 330
Bsp143I GATC 3 cut(s) 14, 97, 232
BspACI CCGC 2 cut(s) 6, 191
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 2 cut(s) 10, 136
BspPI GGATC 3 cut(s) 22, 92, 227
BspT107I GGYRCC 1 cut(s) 134
BspTI CTTAAG 1 cut(s) 557
BsrI ACTGG 1 cut(s) 170
BssMI GATC 3 cut(s) 14, 97, 232
Bst4CI ACNGT 2 cut(s) 360, 486
BstAFI CTTAAG 1 cut(s) 557
BstC8I GCNNGC 1 cut(s) 139
BstFNI CGCG 1 cut(s) 191
BstKTI GATC 3 cut(s) 17, 100, 235
BstMAI GTCTC 2 cut(s) 286, 366
BstMBI GATC 3 cut(s) 14, 97, 232
BstMWI GCNNNNNNNGC 3 cut(s) 147, 295, 346
BstSCI CCNGG 1 cut(s) 10
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 3 cut(s) 233, 298, 525
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 8
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 374
CviAII CATG 2 cut(s) 24, 472
CviJI RGCY 9 cut(s) 40, 166, 185, 246, 289, 311, 317, 349, 401
CviKI_1 RGCY 9 cut(s) 40, 166, 185, 246, 289, 311, 317, 349, 401
CviQI GTAC 1 cut(s) 374
DpnI GATC 3 cut(s) 16, 99, 234
DpnII GATC 3 cut(s) 14, 97, 232
DraIII CACNNNGTG 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 275
FaeI CATG 2 cut(s) 27, 475
FaiI YATR 5 cut(s) 25, 123, 468, 473, 518
FalI AAGNNNNNCTT 3 cut(s) 540, 572, 555
FatI CATG 2 cut(s) 23, 471
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 3 cut(s) 247, 287, 514
Fsp4HI GCNGC 3 cut(s) 247, 287, 514
FspBI CTAG 2 cut(s) 302, 383
GluI GCNGC 3 cut(s) 247, 287, 514
HapII CCGG 2 cut(s) 12, 236
HgaI GACGC 1 cut(s) 197
Hin1II CATG 2 cut(s) 27, 475
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 2 cut(s) 322, 566
HpaII CCGG 2 cut(s) 12, 236
HphI GGTGA 3 cut(s) 12, 205, 498
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 294, 336
Hpy188III TCNNGA 2 cut(s) 92, 480
Hpy8I GTNNAC 1 cut(s) 241
Hpy99I CGWCG 2 cut(s) 51, 54
HpyCH4III ACNGT 2 cut(s) 360, 486
HpyCH4IV ACGT 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 295, 346
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 2 cut(s) 27, 475
Kzo9I GATC 3 cut(s) 14, 97, 232
LmnI GCTCC 2 cut(s) 163, 254
LpnPI CCDG 8 cut(s) 25, 105, 146, 151, 183, 188, 249, 465
Lsp1109I GCAGC 3 cut(s) 233, 298, 525
LweI GCATC 4 cut(s) 78, 285, 327, 522
MaeI CTAG 2 cut(s) 302, 383
MaeII ACGT 1 cut(s) 144
MalI GATC 3 cut(s) 16, 99, 234
MboI GATC 3 cut(s) 14, 97, 232
MboII GAAGA 3 cut(s) 35, 64, 468
MflI RGATCY 1 cut(s) 232
MluCI AATT 1 cut(s) 107
MnlI CCTC 4 cut(s) 99, 111, 514, 564
MseI TTAA 2 cut(s) 558, 580
MslI CAYNNNNRTG 2 cut(s) 22, 335
MspCI CTTAAG 1 cut(s) 557
MspI CCGG 2 cut(s) 12, 236
MspR9I CCNGG 1 cut(s) 12
Mva1269I GAATGC 1 cut(s) 330
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 3 cut(s) 147, 295, 346
NciI CCSGG 1 cut(s) 12
NdeII GATC 3 cut(s) 14, 97, 232
NlaIII CATG 2 cut(s) 27, 475
NlaIV GGNNCC 2 cut(s) 10, 136
NmeAIII GCCGAG 1 cut(s) 343
PctI GAATGC 1 cut(s) 330
PfeI GAWTC 2 cut(s) 322, 566
PfoI TCCNGGA 1 cut(s) 10
PkrI GCNGC 3 cut(s) 248, 288, 515
PspN4I GGNNCC 2 cut(s) 10, 136
PspPI GGNCC 1 cut(s) 8
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
RseI CAYNNNNRTG 2 cut(s) 22, 335
SaqAI TTAA 2 cut(s) 558, 580
SatI GCNGC 3 cut(s) 247, 287, 514
Sau3AI GATC 3 cut(s) 14, 97, 232
Sau96I GGNCC 1 cut(s) 8
ScaI AGTACT 1 cut(s) 375
ScrFI CCNGG 1 cut(s) 12
SetI ASST 9 cut(s) 42, 82, 129, 147, 168, 187, 291, 356, 403
SfaNI GCATC 4 cut(s) 78, 285, 327, 522
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 22, 335
SmlI CTYRAG 2 cut(s) 312, 557
SmoI CTYRAG 2 cut(s) 312, 557
Sse9I AATT 1 cut(s) 107
SsiI CCGC 2 cut(s) 6, 191
SspMI CTAG 2 cut(s) 302, 383
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 360, 486
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 46
TasI AATT 1 cut(s) 107
TatI WGTACW 1 cut(s) 373
TfiI GAWTC 2 cut(s) 322, 566
Tru1I TTAA 2 cut(s) 558, 580
Tru9I TTAA 2 cut(s) 558, 580
TscAI CASTG 1 cut(s) 312
TseI GCWGC 3 cut(s) 246, 286, 513
TspDTI ATGAA 2 cut(s) 110, 164
TspRI CASTG 1 cut(s) 312
Vha464I CTTAAG 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 2 cut(s) 302, 383
ZrmI AGTACT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.