Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8489701.1

Orthogroup ID

OG0002494

Physical Location & Seq

Genomic Coordinates Reverse (-)

626 .. 1309

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8489701.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgggaggaacttcaccatgtgcttcgtgcaagttgttgaggcgccgctgcgccaaggactgcatctttgccccttattttccttccgatgaccctcataagtttgccattgttcacaaggtctttggtgctagcaatgtcagcaaaatgttgcaggagcttccgcttcatcagagaggagatgctgtgagcagcttggtgtatgaagcaaatgcaagagtgagagacccggtttacggctgtgttggtgctatatctttcctgcagaatcaagtttcgaatctgcaaatgcagctcgcggtggctcaggctgaaatactctgcatccagatgcaacaagagccggttgcagcgaccttacccgcatcgcagatgctagatcatcaccaatatcaagatcacgatcagaaatcccttctcttgtccaatagtcacgacttcaacaacattccacagtacctcagcagctttgcttcttccagcaatgtaatccaagaccctcttaagagagagtctctatggacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

175

Amino Acids

19.46

Weight (kDa)

6.63

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30130
fragaria_vesca	FvH4_3g39540 FvH4_7g25110
malus_domestica	MD01G1157900.v1.1 MD03G1060100.v1.1 MD07G1226600.v1.1 MD11G1063200.v1.1
prunus_persica	Prupe.2G256200_v2.0.a1 Prupe.6G050400_v2.0.a1
pyrus_communis	pycom07g20510 pycom11g05290
rosa_chinensis	RchiOBHm_Chr1g0370961 RchiOBHm_Chr1g0370991 RchiOBHm_Chr5g0071311
rosa_laevigata	RLG00000026992 RLG00000026995 RLG00000036201
rosa_multiflora	Rmu_co8489701.1_g000001 Rmu_sc0001018.1_g000013 Rmu_sc0001018.1_g000019 Rmu_sc0006990.1_g000009
rosa_roxburghii	Rroxscaffold_1G00009830 Rroxscaffold_4G00286050 Rroxscaffold_4G00286080
rosa_rugosa	Rorug01G0360300 Rorug01G0360600 Rorug05G0411200
rosa_samantha	Rh1AG370700 Rh1BG334300 Rh1BG334500 Rh1CG347600 Rh1CG347800 Rh1DG365500 Rh1DG365700 Rh5AG467600 Rh5BG486100 Rh5CG510500 Rh5DG497300
rosa_wichuraiana	Rw1G032620 Rw1G032640 Rw5G043440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AccII	CGCG	1 cut(s)	299
AciI	CCGC	4 cut(s)	46, 164, 299, 363
AcyI	GRCGYC	1 cut(s)	43
AdeI	CACNNNGTG	1 cut(s)	20
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflII	CTTAAG	1 cut(s)	503
AgsI	TTSAA	1 cut(s)	442
AluBI	AGCT	4 cut(s)	160, 195, 295, 468
AluI	AGCT	4 cut(s)	160, 195, 295, 468
Alw26I	GTCTC	2 cut(s)	219, 519
ApeKI	GCWGC	5 cut(s)	48, 192, 292, 350, 465
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspLEI	GCGC	2 cut(s)	45, 53
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	6, 377
AsuII	TTCGAA	1 cut(s)	278
AsuNHI	GCTAGC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	461
BbvI	GCAGC	5 cut(s)	35, 204, 304, 362, 477
BceAI	ACGGC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	219, 519
BfaI	CTAG	2 cut(s)	132, 377
BfmI	CTRYAG	1 cut(s)	263
BfoI	RGCGCY	1 cut(s)	46
BfrI	CTTAAG	1 cut(s)	503
BisI	GCNGC	6 cut(s)	46, 49, 193, 293, 351, 466
BlsI	GCNGC	6 cut(s)	47, 50, 194, 294, 352, 467
Bme1390I	CCNGG	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	6 cut(s)	72, 172, 321, 333, 363, 374
BmtI	GCTAGC	1 cut(s)	135
BplI	GAGNNNNNCTC	1 cut(s)	499
Bpu10I	CCTNAGC	2 cut(s)	306, 461
Bpu14I	TTCGAA	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse118I	RCCGGY	1 cut(s)	343
Bse3DI	GCAATG	2 cut(s)	142, 490
Bse8I	GATNNNNATC	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	324
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	2 cut(s)	142, 490
BseMII	CTCAG	2 cut(s)	320, 475
BseRI	GAGGAG	1 cut(s)	192
BseXI	GCAGC	5 cut(s)	35, 204, 304, 362, 477
Bsh1236I	CGCG	1 cut(s)	299
BshNI	GGYRCC	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	230, 344
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	219, 519
Bso31I	GGTCTC	1 cut(s)	219
Bsp119I	TTCGAA	1 cut(s)	278
Bsp143I	GATC	3 cut(s)	379, 397, 403
BspACI	CCGC	4 cut(s)	46, 164, 299, 363
BspCNI	CTCAG	2 cut(s)	319, 474
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	1 cut(s)	44
BspMAI	CTGCAG	1 cut(s)	267
BspOI	GCTAGC	1 cut(s)	135
BspT104I	TTCGAA	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	42
BspTI	CTTAAG	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	219
BsrDI	GCAATG	2 cut(s)	142, 490
BsrFI	RCCGGY	1 cut(s)	343
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	3 cut(s)	379, 397, 403
BssNI	GRCGYC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	456
BstACI	GRCGYC	1 cut(s)	43
BstAFI	CTTAAG	1 cut(s)	503
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	133, 297
BstDEI	CTNAG	2 cut(s)	306, 461
BstF5I	GGATG	1 cut(s)	324
BstFNI	CGCG	1 cut(s)	299
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	2 cut(s)	45, 53
BstKTI	GATC	3 cut(s)	382, 400, 406
BstMAI	GTCTC	2 cut(s)	219, 519
BstMBI	GATC	3 cut(s)	379, 397, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 292, 340
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	263
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	5 cut(s)	35, 204, 304, 362, 477
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	133, 297
CfoI	GCGC	2 cut(s)	45, 53
Cfr10I	RCCGGY	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	8 cut(s)	160, 195, 240, 295, 305, 311, 343, 468
CviKI_1	RGCY	8 cut(s)	160, 195, 240, 295, 305, 311, 343, 468
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	2 cut(s)	306, 461
DinI	GGCGCC	1 cut(s)	44
DpnI	GATC	3 cut(s)	381, 399, 405
DpnII	GATC	3 cut(s)	379, 397, 403
DraIII	CACNNNGTG	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	54
EgeI	GGCGCC	1 cut(s)	44
EheI	GGCGCC	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	21
FaiI	YATR	5 cut(s)	19, 99, 204, 254, 520
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FatI	CATG	1 cut(s)	17
FauI	CCCGC	1 cut(s)	370
Fnu4HI	GCNGC	6 cut(s)	46, 49, 193, 293, 351, 466
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	6 cut(s)	46, 49, 193, 293, 351, 466
FspBI	CTAG	2 cut(s)	132, 377
GlaI	GCGC	2 cut(s)	44, 52
GluI	GCNGC	6 cut(s)	46, 49, 193, 293, 351, 466
HaeII	RGCGCY	1 cut(s)	46
HapII	CCGG	2 cut(s)	230, 344
HhaI	GCGC	2 cut(s)	45, 53
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	1 cut(s)	21
Hin6I	GCGC	2 cut(s)	43, 51
HinP1I	GCGC	2 cut(s)	43, 51
HinfI	GANTC	3 cut(s)	268, 280, 512
HpaII	CCGG	2 cut(s)	230, 344
HphI	GGTGA	2 cut(s)	6, 377
Hpy166II	GTNNAC	2 cut(s)	115, 235
Hpy188I	TCNGA	3 cut(s)	88, 174, 408
Hpy188III	TCNNGA	4 cut(s)	328, 395, 401, 434
Hpy8I	GTNNAC	2 cut(s)	115, 235
HpyAV	CCTTC	2 cut(s)	93, 425
HpyCH4III	ACNGT	1 cut(s)	456
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 292, 340
HpyF3I	CTNAG	2 cut(s)	306, 461
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	21
HspAI	GCGC	2 cut(s)	43, 51
KasI	GGCGCC	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	379, 397, 403
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	7 cut(s)	140, 243, 275, 293, 341, 357, 493
Lsp1109I	GCAGC	5 cut(s)	35, 204, 304, 362, 477
LweI	GCATC	6 cut(s)	72, 172, 321, 333, 363, 374
MaeI	CTAG	2 cut(s)	132, 377
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	3 cut(s)	381, 399, 405
MboI	GATC	3 cut(s)	379, 397, 403
MboII	GAAGA	1 cut(s)	468
Mly113I	GGCGCC	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	521
MnlI	CCTC	5 cut(s)	33, 105, 170, 470, 510
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	48
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	2 cut(s)	230, 344
MspR9I	CCNGG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	3 cut(s)	141, 292, 340
NarI	GGCGCC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	3 cut(s)	379, 397, 403
NheI	GCTAGC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	21
NlaIV	GGNNCC	1 cut(s)	44
NmuCI	GTSAC	1 cut(s)	431
NspV	TTCGAA	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	268, 280
PkrI	GCNGC	6 cut(s)	47, 50, 194, 294, 352, 467
PleI	GAGTC	1 cut(s)	520
PluTI	GGCGCC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	520
PspN4I	GGNNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	267
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	6 cut(s)	46, 49, 193, 293, 351, 466
Sau3AI	GATC	3 cut(s)	379, 397, 403
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	7 cut(s)	123, 162, 197, 297, 359, 462, 470
SfaNI	GCATC	6 cut(s)	72, 172, 321, 333, 363, 374
SfcI	CTRYAG	1 cut(s)	263
SfoI	GGCGCC	1 cut(s)	44
SfuI	TTCGAA	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
SsiI	CCGC	4 cut(s)	46, 164, 299, 363
SspDI	GGCGCC	1 cut(s)	42
SspMI	CTAG	2 cut(s)	132, 377
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	278
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	268, 280
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	5 cut(s)	48, 192, 292, 350, 465
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	2 cut(s)	158, 219
Vha464I	CTTAAG	1 cut(s)	503
XspI	CTAG	2 cut(s)	132, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.