Rh1DG365500

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002494
Physical Location & Seq
Forward (+)
59114451 .. 59115105
655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG365500.1

Sequence Viewer

Length: 519 bp
ATGGGCGGAAATGGAACTTCACCGTGCGCCTCTTGCAAGTTGCTGAGACGCCGATGCGCCCAAGACTGCATTTTTGCCCCTTACTTTCCCTCCGATGACCCCCACAAGTTCGCCATCGTGCACAAAGTCTTTGGTGCTAGCAATGTTAGCAAGATGTTACAGGAGCTTCCAGTTCACCAGAGAACAGATGCAGTGAGCAGTCTAGTGTATGAAGCCAATGCAAGAGTGAGAGACCCAGTTTATGGGTGTGTTGGGGCCATTTCTTGCCTGCAAAACCAAGTCTCTGAGCTGCAAATGCAACTTGCTGTGGCTCAGGCCGAGATCCTCTGCATTCAGATGCAGCAAGAGCCTATGATACTCCCTTCCCAGCAGATCGACACATGCTCAGACGATGAGAGGACATATTTCCTCAATAACGATCTCCCTCAGTACCTGGACTTTCCCTCTTCTAGTTCTAGCAATGTAATCCATGACTCTCTCAAGAGGGAGGGCATCTTTGGACATGACATGGTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

172

Amino Acids

19.07

Weight (kDa)

5.23

Isoelectric Point (pI)

58.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 8 - 105 9e-43 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 242
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 49
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 1 cut(s) 242
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 2 cut(s) 166, 289
AluI AGCT 2 cut(s) 166, 289
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 3 cut(s) 40, 225, 286
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 1 cut(s) 316
AlwNI CAGNNNCTG 1 cut(s) 433
AoxI GGCC 2 cut(s) 255, 315
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 289, 340
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspLEI GCGC 2 cut(s) 29, 59
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 12, 167
AsuNHI GCTAGC 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 276, 352
BccI CCATC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 434
BcoDI GTCTC 3 cut(s) 40, 225, 286
BfaI CTAG 4 cut(s) 138, 203, 450, 456
BisI GCNGC 2 cut(s) 290, 341
BlsI GCNGC 2 cut(s) 291, 342
Bme1390I CCNGG 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 434
BmrI ACTGGG 1 cut(s) 230
BmsI GCATC 4 cut(s) 44, 178, 327, 501
BmtI GCTAGC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 225
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 170, 236
Bse3DI GCAATG 2 cut(s) 148, 466
BseBI CCWGG 1 cut(s) 434
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 2 cut(s) 148, 466
BseMII CTCAG 5 cut(s) 35, 276, 326, 399, 440
BseNI ACTGG 2 cut(s) 170, 236
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 2 cut(s) 276, 352
BseYI CCCAGC 1 cut(s) 366
BshFI GGCC 2 cut(s) 257, 317
BsiHKAI GWGCWC 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 3 cut(s) 40, 225, 286
BsmBI CGTCTC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 2 cut(s) 257, 317
Bso31I GGTCTC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 321, 372, 418
BspACI CCGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 257, 317
BspCNI CTCAG 5 cut(s) 36, 277, 325, 398, 439
BspLI GGNNCC 1 cut(s) 256
BspOI GCTAGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 225
BsrDI GCAATG 2 cut(s) 148, 466
BsrI ACTGG 2 cut(s) 170, 236
BssMI GATC 3 cut(s) 321, 372, 418
BssNI GRCGYC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 1 cut(s) 24
Bst6I CTCTTC 1 cut(s) 451
BstACI GRCGYC 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 139, 269
BstDEI CTNAG 5 cut(s) 44, 285, 312, 385, 426
BstHHI GCGC 2 cut(s) 29, 59
BstKTI GATC 3 cut(s) 324, 375, 421
BstMAI GTCTC 3 cut(s) 40, 225, 286
BstMBI GATC 3 cut(s) 321, 372, 418
BstMWI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
BstNI CCWGG 1 cut(s) 434
BstNSI RCATGY 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 432
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 276, 352
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BsuRI GGCC 2 cut(s) 257, 317
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 2 cut(s) 139, 269
CaiI CAGNNNCTG 1 cut(s) 433
CfoI GCGC 2 cut(s) 29, 59
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 430
CviAII CATG 4 cut(s) 381, 470, 503, 508
CviJI RGCY 7 cut(s) 166, 215, 257, 289, 311, 317, 349
CviKI_1 RGCY 7 cut(s) 166, 215, 257, 289, 311, 317, 349
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 5 cut(s) 44, 285, 312, 385, 426
DpnI GATC 3 cut(s) 323, 374, 420
DpnII GATC 3 cut(s) 321, 372, 418
Eam1104I CTCTTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 451
EciI GGCGGA 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 4 cut(s) 384, 473, 506, 511
FaiI YATR 8 cut(s) 210, 243, 353, 382, 403, 471, 504, 509
FatI CATG 4 cut(s) 380, 469, 502, 507
Fnu4HI GCNGC 2 cut(s) 290, 341
Fsp4HI GCNGC 2 cut(s) 290, 341
FspBI CTAG 4 cut(s) 138, 203, 450, 456
GlaI GCGC 2 cut(s) 28, 58
GluI GCNGC 2 cut(s) 290, 341
GsaI CCCAGC 1 cut(s) 370
HaeIII GGCC 2 cut(s) 257, 317
HgaI GACGC 1 cut(s) 57
HhaI GCGC 2 cut(s) 29, 59
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 4 cut(s) 384, 473, 506, 511
Hin6I GCGC 2 cut(s) 27, 57
HinP1I GCGC 2 cut(s) 27, 57
HinfI GANTC 1 cut(s) 473
HphI GGTGA 2 cut(s) 12, 167
Hpy166II GTNNAC 2 cut(s) 121, 175
Hpy188I TCNGA 4 cut(s) 94, 286, 336, 388
Hpy188III TCNNGA 1 cut(s) 481
Hpy8I GTNNAC 2 cut(s) 121, 175
HpyAV CCTTC 1 cut(s) 372
HpyCH4III ACNGT 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
HpyF3I CTNAG 5 cut(s) 44, 285, 312, 385, 426
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 4 cut(s) 384, 473, 506, 511
HspAI GCGC 2 cut(s) 27, 57
Kzo9I GATC 3 cut(s) 321, 372, 418
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 9 cut(s) 146, 183, 191, 249, 281, 299, 380, 419, 446
Lsp1109I GCAGC 2 cut(s) 276, 352
LweI GCATC 4 cut(s) 44, 178, 327, 501
MaeI CTAG 4 cut(s) 138, 203, 450, 456
MaeIII GTNAC 1 cut(s) 156
MalI GATC 3 cut(s) 323, 374, 420
MboI GATC 3 cut(s) 321, 372, 418
MboII GAAGA 1 cut(s) 438
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 1 cut(s) 123
MlyI GAGTC 1 cut(s) 467
MnlI CCTC 9 cut(s) 40, 100, 335, 390, 419, 435, 454, 477, 481
MseI TTAA 1 cut(s) 517
MslI CAYNNNNRTG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 434
Mva1269I GAATGC 1 cut(s) 330
MvaI CCWGG 1 cut(s) 434
MwoI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
NdeII GATC 3 cut(s) 321, 372, 418
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 4 cut(s) 384, 473, 506, 511
NlaIV GGNNCC 1 cut(s) 256
NmeAIII GCCGAG 1 cut(s) 343
NspI RCATGY 1 cut(s) 384
PctI GAATGC 1 cut(s) 330
PflFI GACNNNGTC 1 cut(s) 509
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 2 cut(s) 291, 342
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 432
PspFI CCCAGC 1 cut(s) 366
PspGI CCWGG 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 321
PsyI GACNNNGTC 1 cut(s) 509
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 1 cut(s) 517
SatI GCNGC 2 cut(s) 290, 341
Sau3AI GATC 3 cut(s) 321, 372, 418
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 1 cut(s) 434
SduI GDGCHC 1 cut(s) 123
SetI ASST 3 cut(s) 168, 291, 435
SfaNI GCATC 4 cut(s) 44, 178, 327, 501
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
SsiI CCGC 1 cut(s) 6
SspMI CTAG 4 cut(s) 138, 203, 450, 456
StyD4I CCNGG 1 cut(s) 432
TaaI ACNGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 375
Tru1I TTAA 1 cut(s) 517
Tru9I TTAA 1 cut(s) 517
TscAI CASTG 1 cut(s) 198
TseI GCWGC 2 cut(s) 289, 340
TspDTI ATGAA 1 cut(s) 225
TspRI CASTG 1 cut(s) 198
Tth111I GACNNNGTC 1 cut(s) 509
Van91I CCANNNNNTGG 1 cut(s) 242
VneI GTGCAC 1 cut(s) 119
XceI RCATGY 1 cut(s) 384
XspI CTAG 4 cut(s) 138, 203, 450, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.