Rh5BG486100

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002494
Physical Location & Seq
Forward (+)
77624337 .. 77625465
1129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG486100.1

Sequence Viewer

Length: 624 bp
ATGGCATTTCCAACCTATTGCTGCTTCATACCCTTCACGCGCCTAGGCGGTGGTCAACCAGAGAAGGATCTATTCTGCAATGCTGCAGAGGGTGAAATGGGAGGAACTTCACCATGTGCTTCGTGCAAGTTGTTGAGGCGCCGCTGCGCCAAGGACTGCATCTTTGCCCCTTATTTTCCTTCCGATGACCCTCATAAGTTTGCCATTGTTCACAAGGTCTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTTCCGCTTCATCAGAGAGGAGATGCTGTGAGCAGCTTGGTGTATGAAGCAAATGCAAGAGTGAGAGACCCGGTTTACGGCTGTGTTGGTGCTATATCTTTCCTGCAGAATCAAGTTTCGAATCTGCAAATGCAGCTCGCGGTGGCTCAGGCTGAAATACTCTGCATCCAGATGCAACAAGAGCCGGTTGCAGCGACCTTACCCGCATCGCAGATGCTAGATCATCACCAATATCAAGATCACGATCAGAAATCCCTTCTCTTGTCCAATAGTCACGACTTCAACAACATTCCACAGTACCTCAGCAGCTTTGCTTCTTCCAGCAATGTAATCCAAGACCCTCTTAAGAGAGAGTCTCTATGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

207

Amino Acids

22.96

Weight (kDa)

6.14

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 38 - 135 4.3e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 138
AccII CGCG 2 cut(s) 40, 395
AciI CCGC 5 cut(s) 48, 142, 260, 395, 459
AclWI GGATC 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 139
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 1 cut(s) 332
AflII CTTAAG 1 cut(s) 599
AgsI TTSAA 1 cut(s) 538
AluBI AGCT 4 cut(s) 256, 291, 391, 564
AluI AGCT 4 cut(s) 256, 291, 391, 564
Alw26I GTCTC 2 cut(s) 315, 615
AlwI GGATC 1 cut(s) 75
ApeKI GCWGC 7 cut(s) 21, 83, 144, 288, 388, 446, 561
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspA2I CCTAGG 1 cut(s) 43
AspLEI GCGC 3 cut(s) 42, 141, 149
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 3 cut(s) 102, 104, 473
AsuII TTCGAA 1 cut(s) 374
AsuNHI GCTAGC 1 cut(s) 227
AvrII CCTAGG 1 cut(s) 43
BanI GGYRCC 1 cut(s) 138
BbvCI CCTCAGC 1 cut(s) 557
BbvI GCAGC 7 cut(s) 8, 70, 131, 300, 400, 458, 573
BceAI ACGGC 1 cut(s) 349
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 2 cut(s) 315, 615
BfaI CTAG 3 cut(s) 44, 228, 473
BfmI CTRYAG 2 cut(s) 84, 359
BfoI RGCGCY 1 cut(s) 142
BfrI CTTAAG 1 cut(s) 599
BisI GCNGC 8 cut(s) 22, 84, 142, 145, 289, 389, 447, 562
BlnI CCTAGG 1 cut(s) 43
BlsI GCNGC 8 cut(s) 23, 85, 143, 146, 290, 390, 448, 563
Bme1390I CCNGG 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 326
BmsI GCATC 6 cut(s) 168, 268, 417, 429, 459, 470
BmtI GCTAGC 1 cut(s) 231
BplI GAGNNNNNCTC 1 cut(s) 595
Bpu10I CCTNAGC 2 cut(s) 402, 557
Bpu14I TTCGAA 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 498
BsaHI GRCGYC 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 315
BsaJI CCNNGG 2 cut(s) 43, 150
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse118I RCCGGY 1 cut(s) 439
Bse3DI GCAATG 3 cut(s) 85, 238, 586
Bse8I GATNNNNATC 1 cut(s) 498
BseDI CCNNGG 2 cut(s) 43, 150
BseGI GGATG 1 cut(s) 420
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMI GCAATG 3 cut(s) 85, 238, 586
BseMII CTCAG 2 cut(s) 416, 571
BseRI GAGGAG 1 cut(s) 288
BseXI GCAGC 7 cut(s) 8, 70, 131, 300, 400, 458, 573
Bsh1236I CGCG 2 cut(s) 40, 395
BshNI GGYRCC 1 cut(s) 138
BsiSI CCGG 2 cut(s) 326, 440
BslI CCNNNNNNNGG 1 cut(s) 332
BsmAI GTCTC 2 cut(s) 315, 615
Bso31I GGTCTC 1 cut(s) 315
Bsp119I TTCGAA 1 cut(s) 374
Bsp143I GATC 4 cut(s) 67, 475, 493, 499
BspACI CCGC 5 cut(s) 48, 142, 260, 395, 459
BspCNI CTCAG 2 cut(s) 415, 570
BspFNI CGCG 2 cut(s) 40, 395
BspLI GGNNCC 1 cut(s) 140
BspMAI CTGCAG 2 cut(s) 88, 363
BspOI GCTAGC 1 cut(s) 231
BspPI GGATC 1 cut(s) 75
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 138
BspTI CTTAAG 1 cut(s) 599
BspTNI GGTCTC 1 cut(s) 315
BsrDI GCAATG 3 cut(s) 85, 238, 586
BsrFI RCCGGY 1 cut(s) 439
BssAI RCCGGY 1 cut(s) 439
BssECI CCNNGG 2 cut(s) 43, 150
BssMI GATC 4 cut(s) 67, 475, 493, 499
BssNI GRCGYC 1 cut(s) 139
BssT1I CCWWGG 2 cut(s) 43, 150
Bst4CI ACNGT 1 cut(s) 552
BstACI GRCGYC 1 cut(s) 139
BstAFI CTTAAG 1 cut(s) 599
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 229, 393
BstDEI CTNAG 2 cut(s) 402, 557
BstF5I GGATG 1 cut(s) 420
BstFNI CGCG 2 cut(s) 40, 395
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 3 cut(s) 42, 141, 149
BstKTI GATC 4 cut(s) 70, 478, 496, 502
BstMAI GTCTC 2 cut(s) 315, 615
BstMBI GATC 4 cut(s) 67, 475, 493, 499
BstMWI GCNNNNNNNGC 3 cut(s) 237, 388, 436
BstSCI CCNGG 1 cut(s) 324
BstSFI CTRYAG 2 cut(s) 84, 359
BstUI CGCG 2 cut(s) 40, 395
BstV1I GCAGC 7 cut(s) 8, 70, 131, 300, 400, 458, 573
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 229, 393
CfoI GCGC 3 cut(s) 42, 141, 149
Cfr10I RCCGGY 1 cut(s) 439
Csp6I GTAC 1 cut(s) 553
CviAII CATG 1 cut(s) 114
CviJI RGCY 8 cut(s) 256, 291, 336, 391, 401, 407, 439, 564
CviKI_1 RGCY 8 cut(s) 256, 291, 336, 391, 401, 407, 439, 564
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 2 cut(s) 402, 557
DinI GGCGCC 1 cut(s) 140
DpnI GATC 4 cut(s) 69, 477, 495, 501
DpnII GATC 4 cut(s) 67, 475, 493, 499
DraIII CACNNNGTG 1 cut(s) 116
Eco130I CCWWGG 2 cut(s) 43, 150
Eco31I GGTCTC 1 cut(s) 315
EcoT14I CCWWGG 2 cut(s) 43, 150
EgeI GGCGCC 1 cut(s) 140
EheI GGCGCC 1 cut(s) 140
ErhI CCWWGG 2 cut(s) 43, 150
FaeI CATG 1 cut(s) 117
FaiI YATR 6 cut(s) 29, 115, 195, 300, 350, 616
FalI AAGNNNNNCTT 2 cut(s) 582, 614
FatI CATG 1 cut(s) 113
FauI CCCGC 1 cut(s) 466
Fnu4HI GCNGC 8 cut(s) 22, 84, 142, 145, 289, 389, 447, 562
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 8 cut(s) 22, 84, 142, 145, 289, 389, 447, 562
FspBI CTAG 3 cut(s) 44, 228, 473
GlaI GCGC 3 cut(s) 41, 140, 148
GluI GCNGC 8 cut(s) 22, 84, 142, 145, 289, 389, 447, 562
HaeII RGCGCY 1 cut(s) 142
HapII CCGG 2 cut(s) 326, 440
HhaI GCGC 3 cut(s) 42, 141, 149
Hin1I GRCGYC 1 cut(s) 139
Hin1II CATG 1 cut(s) 117
Hin6I GCGC 3 cut(s) 40, 139, 147
HinP1I GCGC 3 cut(s) 40, 139, 147
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HinfI GANTC 3 cut(s) 364, 376, 608
HpaII CCGG 2 cut(s) 326, 440
HphI GGTGA 3 cut(s) 102, 104, 473
Hpy166II GTNNAC 3 cut(s) 56, 211, 331
Hpy188I TCNGA 3 cut(s) 184, 270, 504
Hpy188III TCNNGA 4 cut(s) 424, 491, 497, 530
Hpy8I GTNNAC 3 cut(s) 56, 211, 331
HpyAV CCTTC 4 cut(s) 43, 58, 189, 521
HpyCH4III ACNGT 1 cut(s) 552
HpyF10VI GCNNNNNNNGC 3 cut(s) 237, 388, 436
HpyF3I CTNAG 2 cut(s) 402, 557
Hsp92I GRCGYC 1 cut(s) 139
Hsp92II CATG 1 cut(s) 117
HspAI GCGC 3 cut(s) 40, 139, 147
KasI GGCGCC 1 cut(s) 138
Kzo9I GATC 4 cut(s) 67, 475, 493, 499
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 8 cut(s) 72, 236, 339, 371, 389, 437, 453, 589
Lsp1109I GCAGC 7 cut(s) 8, 70, 131, 300, 400, 458, 573
LweI GCATC 6 cut(s) 168, 268, 417, 429, 459, 470
MaeI CTAG 3 cut(s) 44, 228, 473
MaeIII GTNAC 1 cut(s) 527
MalI GATC 4 cut(s) 69, 477, 495, 501
MboI GATC 4 cut(s) 67, 475, 493, 499
MboII GAAGA 1 cut(s) 564
MflI RGATCY 1 cut(s) 67
Mly113I GGCGCC 1 cut(s) 139
MlyI GAGTC 1 cut(s) 617
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 7 cut(s) 82, 95, 129, 201, 266, 566, 606
MseI TTAA 1 cut(s) 600
MslI CAYNNNNRTG 1 cut(s) 425
MspA1I CMGCKG 1 cut(s) 144
MspCI CTTAAG 1 cut(s) 599
MspI CCGG 2 cut(s) 326, 440
MspR9I CCNGG 1 cut(s) 326
MvnI CGCG 2 cut(s) 40, 395
MwoI GCNNNNNNNGC 3 cut(s) 237, 388, 436
NarI GGCGCC 1 cut(s) 139
NciI CCSGG 1 cut(s) 326
NdeII GATC 4 cut(s) 67, 475, 493, 499
NheI GCTAGC 1 cut(s) 227
NlaIII CATG 1 cut(s) 117
NlaIV GGNNCC 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 527
NspV TTCGAA 1 cut(s) 374
PfeI GAWTC 2 cut(s) 364, 376
PkrI GCNGC 8 cut(s) 23, 85, 143, 146, 290, 390, 448, 563
PleI GAGTC 1 cut(s) 616
PluTI GGCGCC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 616
PspN4I GGNNCC 1 cut(s) 140
PstI CTGCAG 2 cut(s) 88, 363
PsuI RGATCY 1 cut(s) 67
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 1 cut(s) 600
SatI GCNGC 8 cut(s) 22, 84, 142, 145, 289, 389, 447, 562
Sau3AI GATC 4 cut(s) 67, 475, 493, 499
SchI GAGTC 1 cut(s) 617
ScrFI CCNGG 1 cut(s) 326
SetI ASST 8 cut(s) 17, 219, 258, 293, 393, 455, 558, 566
SfaNI GCATC 6 cut(s) 168, 268, 417, 429, 459, 470
SfcI CTRYAG 2 cut(s) 84, 359
SfoI GGCGCC 1 cut(s) 140
SfuI TTCGAA 1 cut(s) 374
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
SsiI CCGC 5 cut(s) 48, 142, 260, 395, 459
SspDI GGCGCC 1 cut(s) 138
SspMI CTAG 3 cut(s) 44, 228, 473
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 2 cut(s) 43, 150
TaaI ACNGT 1 cut(s) 552
TaqI TCGA 1 cut(s) 374
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 2 cut(s) 364, 376
Tru1I TTAA 1 cut(s) 600
Tru9I TTAA 1 cut(s) 600
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 7 cut(s) 21, 83, 144, 288, 388, 446, 561
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 3 cut(s) 16, 254, 315
Vha464I CTTAAG 1 cut(s) 599
XmaJI CCTAGG 1 cut(s) 43
XspI CTAG 3 cut(s) 44, 228, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.