Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001018.1

Orthogroup ID

OG0002494

Physical Location & Seq

Genomic Coordinates Forward (+)

44791 .. 45446

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001018.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgggcggaaatggaacttcaccgtgcgcctcttgcaagttgctgagacgccgatgcgcacaagactgcatttttgccccttactttccctccgatgacccccacaagttcgccatcgtgcacaaagtcttcggtgctagcaatgttagcaagatgttgcaggagcttccagttcaccagagaacagatgcagtgagcagtctagtgtatgaagccaatgcaagagtgagagacccagtttatgggtgtgttggggccatttcttgcttgcaaaaccaagtctccgagctgcaaatgcaacttgctgtggctcaggccgagatcctctgcattcagatgcagcaagagcctatggtactcccttcccagcagatggacacatgcacagacgatgagaggacatatttcctcaacaacaatctccctcagtacctggactttccctcttctagttctagcaatatccatgactctctcaagagggagggcatctttggacatgacatggtctcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

171

Amino Acids

18.99

Weight (kDa)

5.43

Isoelectric Point (pI)

62.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30130
fragaria_vesca	FvH4_3g39540 FvH4_7g25110
malus_domestica	MD01G1157900.v1.1 MD03G1060100.v1.1 MD07G1226600.v1.1 MD11G1063200.v1.1
prunus_persica	Prupe.2G256200_v2.0.a1 Prupe.6G050400_v2.0.a1
pyrus_communis	pycom07g20510 pycom11g05290
rosa_chinensis	RchiOBHm_Chr1g0370961 RchiOBHm_Chr1g0370991 RchiOBHm_Chr5g0071311
rosa_laevigata	RLG00000026992 RLG00000026995 RLG00000036201
rosa_multiflora	Rmu_co8489701.1_g000001 Rmu_sc0001018.1_g000013 Rmu_sc0001018.1_g000019 Rmu_sc0006990.1_g000009
rosa_roxburghii	Rroxscaffold_1G00009830 Rroxscaffold_4G00286050 Rroxscaffold_4G00286080
rosa_rugosa	Rorug01G0360300 Rorug01G0360600 Rorug05G0411200
rosa_samantha	Rh1AG370700 Rh1BG334300 Rh1BG334500 Rh1CG347600 Rh1CG347800 Rh1DG365500 Rh1DG365700 Rh5AG467600 Rh5BG486100 Rh5CG510500 Rh5DG497300
rosa_wichuraiana	Rw1G032620 Rw1G032640 Rw5G043440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	58
AccB7I	CCANNNNNTGG	2 cut(s)	242, 373
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	316
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	2 cut(s)	357, 431
AfiI	CCNNNNNNNGG	2 cut(s)	242, 373
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	2 cut(s)	166, 289
AluI	AGCT	2 cut(s)	166, 289
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	3 cut(s)	40, 225, 286
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	316
AlwNI	CAGNNNCTG	1 cut(s)	433
AoxI	GGCC	2 cut(s)	255, 315
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	2 cut(s)	289, 340
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspLEI	GCGC	2 cut(s)	29, 59
AspS9I	GGNCC	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	12, 167
AsuNHI	GCTAGC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	276, 352
BccI	CCATC	2 cut(s)	122, 367
BciT130I	CCWGG	1 cut(s)	434
BcoDI	GTCTC	3 cut(s)	40, 225, 286
BfaI	CTAG	4 cut(s)	138, 203, 450, 456
BisI	GCNGC	2 cut(s)	290, 341
BlsI	GCNGC	2 cut(s)	291, 342
Bme1390I	CCNGG	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	434
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	4 cut(s)	44, 178, 327, 498
BmtI	GCTAGC	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	461
BsaHI	GRCGYC	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	225
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 266, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 373
Bse1I	ACTGG	2 cut(s)	170, 236
Bse3DI	GCAATG	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	434
BseLI	CCNNNNNNNGG	2 cut(s)	242, 373
BseMI	GCAATG	1 cut(s)	148
BseMII	CTCAG	3 cut(s)	35, 326, 440
BseNI	ACTGG	2 cut(s)	170, 236
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	276, 352
BseYI	CCCAGC	1 cut(s)	366
BshFI	GGCC	2 cut(s)	257, 317
BsiHKAI	GWGCWC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	242, 373
BsmAI	GTCTC	3 cut(s)	40, 225, 286
BsmBI	CGTCTC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	257, 317
Bso31I	GGTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	257, 317
BspCNI	CTCAG	3 cut(s)	36, 325, 439
BspLI	GGNNCC	1 cut(s)	256
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	316
BspTNI	GGTCTC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	170, 236
BssMI	GATC	1 cut(s)	321
BssNI	GRCGYC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	24
Bst6I	CTCTTC	1 cut(s)	451
BstACI	GRCGYC	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	139, 269
BstDEI	CTNAG	3 cut(s)	44, 312, 426
BstHHI	GCGC	2 cut(s)	29, 59
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	3 cut(s)	40, 225, 286
BstMBI	GATC	1 cut(s)	321
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 147, 295, 346
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	276, 352
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	257, 317
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	139, 269
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	2 cut(s)	29, 59
Cfr13I	GGNCC	1 cut(s)	255
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	356, 430
CviAII	CATG	4 cut(s)	381, 467, 500, 505
CviJI	RGCY	7 cut(s)	166, 215, 257, 289, 311, 317, 349
CviKI_1	RGCY	7 cut(s)	166, 215, 257, 289, 311, 317, 349
CviQI	GTAC	2 cut(s)	356, 430
DdeI	CTNAG	3 cut(s)	44, 312, 426
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	40
FaeI	CATG	4 cut(s)	384, 470, 503, 508
FaiI	YATR	8 cut(s)	210, 243, 353, 382, 403, 468, 501, 506
FatI	CATG	4 cut(s)	380, 466, 499, 504
Fnu4HI	GCNGC	2 cut(s)	290, 341
Fsp4HI	GCNGC	2 cut(s)	290, 341
FspAI	RTGCGCAY	1 cut(s)	58
FspBI	CTAG	4 cut(s)	138, 203, 450, 456
FspI	TGCGCA	1 cut(s)	58
GlaI	GCGC	2 cut(s)	28, 58
GluI	GCNGC	2 cut(s)	290, 341
GsaI	CCCAGC	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	257, 317
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	2 cut(s)	29, 59
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	4 cut(s)	384, 470, 503, 508
Hin6I	GCGC	2 cut(s)	27, 57
HinP1I	GCGC	2 cut(s)	27, 57
HinfI	GANTC	1 cut(s)	470
HphI	GGTGA	2 cut(s)	12, 167
Hpy166II	GTNNAC	2 cut(s)	121, 175
Hpy188I	TCNGA	3 cut(s)	94, 286, 336
Hpy188III	TCNNGA	1 cut(s)	478
Hpy8I	GTNNAC	2 cut(s)	121, 175
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 147, 295, 346
HpyF3I	CTNAG	3 cut(s)	44, 312, 426
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	4 cut(s)	384, 470, 503, 508
HspAI	GCGC	2 cut(s)	27, 57
Kzo9I	GATC	1 cut(s)	321
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	8 cut(s)	146, 183, 191, 249, 299, 380, 419, 446
Lsp1109I	GCAGC	2 cut(s)	276, 352
LweI	GCATC	4 cut(s)	44, 178, 327, 498
MaeI	CTAG	4 cut(s)	138, 203, 450, 456
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	2 cut(s)	121, 438
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	464
MnlI	CCTC	9 cut(s)	40, 100, 335, 390, 419, 435, 454, 474, 478
MseI	TTAA	1 cut(s)	514
MslI	CAYNNNNRTG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	330
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	4 cut(s)	33, 147, 295, 346
NdeII	GATC	1 cut(s)	321
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	4 cut(s)	384, 470, 503, 508
NlaIV	GGNNCC	1 cut(s)	256
NmeAIII	GCCGAG	1 cut(s)	343
NsbI	TGCGCA	1 cut(s)	58
NspI	RCATGY	1 cut(s)	384
PctI	GAATGC	1 cut(s)	330
PflFI	GACNNNGTC	1 cut(s)	506
PflMI	CCANNNNNTGG	2 cut(s)	242, 373
PkrI	GCNGC	2 cut(s)	291, 342
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	255
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	321
PsyI	GACNNNGTC	1 cut(s)	506
RsaI	GTAC	2 cut(s)	357, 431
RsaNI	GTAC	2 cut(s)	356, 430
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	514
SatI	GCNGC	2 cut(s)	290, 341
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	1 cut(s)	255
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	3 cut(s)	168, 291, 435
SfaNI	GCATC	4 cut(s)	44, 178, 327, 498
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	4 cut(s)	138, 203, 450, 456
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	24
Tru1I	TTAA	1 cut(s)	514
Tru9I	TTAA	1 cut(s)	514
TscAI	CASTG	1 cut(s)	198
TseI	GCWGC	2 cut(s)	289, 340
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	198
Tth111I	GACNNNGTC	1 cut(s)	506
Van91I	CCANNNNNTGG	2 cut(s)	242, 373
VneI	GTGCAC	1 cut(s)	119
XceI	RCATGY	1 cut(s)	384
XspI	CTAG	4 cut(s)	138, 203, 450, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.