FvH4_3g39540

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002494
Physical Location & Seq
Forward (+)
33608793 .. 33610145
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39540.t1

Sequence Viewer

Length: 528 bp
ATGGGAGGAACTTCACCATGTGCTTCATGCAAATTGTTGAGGCGCCGCTGCGCCAAGGACTGCATCTTTGCCCCTTACTTCCCTTCCGATGACCCTCACAAGTTTGCCATTGTTCACAAGGTCTTTGGTGCTAGCAATGTTAGCAAAATGTTGCAGGAGCTTCCGCTTCATCAAAGAGGAGATGCTGTGAGCAGCTTGGTGTACGAAGCAAATGCAAGAGTGAGAGACCCTGTTTACGGCTGCGTTGGTGCCATATCTTTCCTGCAGAATCAAGTTTCGAATCTACAAATGCAGCTCGCGGTGGCTCAGGCCGAAATACTTTGCATCCAGATGCAACAGGAGCCAGTTGCAGCTACCTTACCGGCATCACAGATGCTAGATCATCACCAGTATCAAGATCACGATCAGAAATCCCTTCTCTTGTCCAATACTCACGACTTCAGCAACATTCCACAGTACCTCAGTAGCTTTGGTTCTTCCAGCAATGTAATCCAAGACCCTCTTAAGAGAGAGTCTCTATGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

176

Amino Acids

19.43

Weight (kDa)

6.63

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 6 - 103 2.8e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 42, 248
AccII CGCG 1 cut(s) 299
AciI CCGC 3 cut(s) 46, 164, 299
AcuI CTGAAG 1 cut(s) 424
AcyI GRCGYC 1 cut(s) 43
AdeI CACNNNGTG 1 cut(s) 20
AfaI GTAC 2 cut(s) 203, 458
AfiI CCNNNNNNNGG 1 cut(s) 236
AflII CTTAAG 1 cut(s) 503
AluBI AGCT 5 cut(s) 160, 195, 295, 353, 468
AluI AGCT 5 cut(s) 160, 195, 295, 353, 468
Alw26I GTCTC 2 cut(s) 219, 519
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 5 cut(s) 48, 192, 240, 292, 350
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspLEI GCGC 2 cut(s) 45, 53
AsuHPI GGTGA 2 cut(s) 6, 377
AsuII TTCGAA 1 cut(s) 278
AsuNHI GCTAGC 1 cut(s) 131
BanI GGYRCC 2 cut(s) 42, 248
BbvI GCAGC 5 cut(s) 35, 204, 227, 304, 362
BceAI ACGGC 1 cut(s) 253
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BcoDI GTCTC 2 cut(s) 219, 519
BfaI CTAG 2 cut(s) 132, 377
BfmI CTRYAG 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 46
BfrI CTTAAG 1 cut(s) 503
BisI GCNGC 6 cut(s) 46, 49, 193, 241, 293, 351
BlsI GCNGC 6 cut(s) 47, 50, 194, 242, 294, 352
BmiI GGNNCC 3 cut(s) 44, 250, 342
BmsI GCATC 6 cut(s) 72, 172, 321, 333, 363, 374
BmtI GCTAGC 1 cut(s) 135
BplI GAGNNNNNCTC 1 cut(s) 499
Bpu10I CCTNAGC 1 cut(s) 306
Bpu14I TTCGAA 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 2 cut(s) 344, 388
Bse3DI GCAATG 2 cut(s) 142, 490
Bse8I GATNNNNATC 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 324
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 2 cut(s) 142, 490
BseMII CTCAG 2 cut(s) 320, 475
BseNI ACTGG 2 cut(s) 344, 388
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 5 cut(s) 35, 204, 227, 304, 362
Bsh1236I CGCG 1 cut(s) 299
BshFI GGCC 1 cut(s) 311
BshNI GGYRCC 2 cut(s) 42, 248
BsiSI CCGG 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 2 cut(s) 219, 519
BsnI GGCC 1 cut(s) 311
Bso31I GGTCTC 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 278
Bsp143I GATC 3 cut(s) 379, 397, 403
BspACI CCGC 3 cut(s) 46, 164, 299
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 2 cut(s) 319, 474
BspFNI CGCG 1 cut(s) 299
BspLI GGNNCC 3 cut(s) 44, 250, 342
BspMAI CTGCAG 1 cut(s) 267
BspOI GCTAGC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 278
BspT107I GGYRCC 2 cut(s) 42, 248
BspTI CTTAAG 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 219
BsrDI GCAATG 2 cut(s) 142, 490
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 2 cut(s) 344, 388
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 3 cut(s) 379, 397, 403
BssNI GRCGYC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 456
BstACI GRCGYC 1 cut(s) 43
BstAFI CTTAAG 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 133, 297
BstDEI CTNAG 2 cut(s) 306, 461
BstF5I GGATG 1 cut(s) 324
BstFNI CGCG 1 cut(s) 299
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 2 cut(s) 45, 53
BstKTI GATC 3 cut(s) 382, 400, 406
BstMAI GTCTC 2 cut(s) 219, 519
BstMBI GATC 3 cut(s) 379, 397, 403
BstMWI GCNNNNNNNGC 2 cut(s) 141, 340
BstSFI CTRYAG 1 cut(s) 263
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 5 cut(s) 35, 204, 227, 304, 362
BsuRI GGCC 1 cut(s) 311
BtsCI GGATG 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 133, 297
CfoI GCGC 2 cut(s) 45, 53
Cfr10I RCCGGY 1 cut(s) 361
Csp6I GTAC 2 cut(s) 202, 457
CviAII CATG 2 cut(s) 18, 27
CviJI RGCY 9 cut(s) 160, 195, 240, 295, 305, 311, 343, 353, 468
CviKI_1 RGCY 9 cut(s) 160, 195, 240, 295, 305, 311, 343, 353, 468
CviQI GTAC 2 cut(s) 202, 457
DdeI CTNAG 2 cut(s) 306, 461
DinI GGCGCC 1 cut(s) 44
DpnI GATC 3 cut(s) 381, 399, 405
DpnII GATC 3 cut(s) 379, 397, 403
DraIII CACNNNGTG 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 54
EgeI GGCGCC 1 cut(s) 44
EheI GGCGCC 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 2 cut(s) 21, 30
FaiI YATR 4 cut(s) 19, 28, 254, 520
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FatI CATG 2 cut(s) 17, 26
Fnu4HI GCNGC 6 cut(s) 46, 49, 193, 241, 293, 351
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 6 cut(s) 46, 49, 193, 241, 293, 351
FspBI CTAG 2 cut(s) 132, 377
GlaI GCGC 2 cut(s) 44, 52
GluI GCNGC 6 cut(s) 46, 49, 193, 241, 293, 351
HaeII RGCGCY 1 cut(s) 46
HaeIII GGCC 1 cut(s) 311
HapII CCGG 1 cut(s) 362
HhaI GCGC 2 cut(s) 45, 53
Hin1I GRCGYC 1 cut(s) 43
Hin1II CATG 2 cut(s) 21, 30
Hin6I GCGC 2 cut(s) 43, 51
HinP1I GCGC 2 cut(s) 43, 51
HinfI GANTC 3 cut(s) 268, 280, 512
HpaII CCGG 1 cut(s) 362
HphI GGTGA 2 cut(s) 6, 377
Hpy166II GTNNAC 3 cut(s) 115, 202, 235
Hpy188I TCNGA 2 cut(s) 88, 408
Hpy188III TCNNGA 4 cut(s) 328, 395, 401, 434
Hpy8I GTNNAC 3 cut(s) 115, 202, 235
HpyAV CCTTC 2 cut(s) 93, 425
HpyCH4III ACNGT 1 cut(s) 456
HpyCH4V TGCA 9 cut(s) 30, 63, 154, 215, 265, 292, 324, 334, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 340
HpyF3I CTNAG 2 cut(s) 306, 461
Hsp92I GRCGYC 1 cut(s) 43
Hsp92II CATG 2 cut(s) 21, 30
HspAI GCGC 2 cut(s) 43, 51
KasI GGCGCC 1 cut(s) 42
Kzo9I GATC 3 cut(s) 379, 397, 403
LmnI GCTCC 2 cut(s) 157, 340
Lsp1109I GCAGC 5 cut(s) 35, 204, 227, 304, 362
LweI GCATC 6 cut(s) 72, 172, 321, 333, 363, 374
MaeI CTAG 2 cut(s) 132, 377
MalI GATC 3 cut(s) 381, 399, 405
MboI GATC 3 cut(s) 379, 397, 403
MboII GAAGA 1 cut(s) 468
MluCI AATT 1 cut(s) 32
Mly113I GGCGCC 1 cut(s) 43
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 5 cut(s) 33, 105, 170, 470, 510
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 48
MspCI CTTAAG 1 cut(s) 503
MspI CCGG 1 cut(s) 362
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 141, 340
NarI GGCGCC 1 cut(s) 43
NdeII GATC 3 cut(s) 379, 397, 403
NheI GCTAGC 1 cut(s) 131
NlaIII CATG 2 cut(s) 21, 30
NlaIV GGNNCC 3 cut(s) 44, 250, 342
NspV TTCGAA 1 cut(s) 278
PfeI GAWTC 2 cut(s) 268, 280
PkrI GCNGC 6 cut(s) 47, 50, 194, 242, 294, 352
PleI GAGTC 1 cut(s) 520
PluTI GGCGCC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 520
PspN4I GGNNCC 3 cut(s) 44, 250, 342
PsrI GAACNNNNNNTAC 2 cut(s) 457, 489
PstI CTGCAG 1 cut(s) 267
RsaI GTAC 2 cut(s) 203, 458
RsaNI GTAC 2 cut(s) 202, 457
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 6 cut(s) 46, 49, 193, 241, 293, 351
Sau3AI GATC 3 cut(s) 379, 397, 403
SchI GAGTC 1 cut(s) 521
SetI ASST 8 cut(s) 123, 162, 197, 297, 355, 359, 462, 470
SfaNI GCATC 6 cut(s) 72, 172, 321, 333, 363, 374
SfcI CTRYAG 1 cut(s) 263
SfoI GGCGCC 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 1 cut(s) 32
SsiI CCGC 3 cut(s) 46, 164, 299
SspDI GGCGCC 1 cut(s) 42
SspMI CTAG 2 cut(s) 132, 377
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 456
TaqI TCGA 1 cut(s) 278
TasI AATT 1 cut(s) 32
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 2 cut(s) 268, 280
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TseI GCWGC 5 cut(s) 48, 192, 240, 292, 350
TspDTI ATGAA 2 cut(s) 15, 158
Vha464I CTTAAG 1 cut(s) 503
XspI CTAG 2 cut(s) 132, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.