Rroxscaffold_1G00009830

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002494
Physical Location & Seq
Reverse (-)
12334319 .. 12335002
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009830.1

Sequence Viewer

Length: 528 bp
ATGGGAGGAACTTCACCATGTGCTTCGTGCAAGTTGTTGAGGCGCCGCTGCGCCAAGGACTGCATCTTTGCCCCTTACTTTCCTTCCGATGACCCTCATAAGTTTGCCATTGTTCACAAGGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTTCCGCTTCATCAGAGAGGAGATGCTGTAAGCAGCTTGGTGTATGAAGCAAATGCAAGAGTGAGAGACCCGGTTTACGGCTGTGTTGGTGCTATATCTTTCCTGCAGAATCAAGTTTCGAATCTGCAAATGCAGCTCGCGGTGGCTCAGGCTGAAATACTCTGCATCCAGATGCAACAAGAGCCAGTTGCAGCGACCTTACCCGCATCGCAGATGCTAGATCATCACCAATATCAAGATCACGATCAGAAATCCCTTCTCTTGTCCAATAGTCACGACTTCAACAACATTCCACAGTACCTCAGCAGCTTTGCTTCTTCCAGCAATGTAATCCAAGACCCTCTTAAGAGAGAGTCTCTATGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

175

Amino Acids

19.46

Weight (kDa)

6.63

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 6 - 103 2.8e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 42
AccII CGCG 1 cut(s) 299
AciI CCGC 4 cut(s) 46, 164, 299, 363
AcyI GRCGYC 1 cut(s) 43
AdeI CACNNNGTG 1 cut(s) 20
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 236
AflII CTTAAG 1 cut(s) 503
AgsI TTSAA 1 cut(s) 442
AluBI AGCT 4 cut(s) 160, 195, 295, 468
AluI AGCT 4 cut(s) 160, 195, 295, 468
Alw26I GTCTC 2 cut(s) 219, 519
ApeKI GCWGC 5 cut(s) 48, 192, 292, 350, 465
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspLEI GCGC 2 cut(s) 45, 53
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 6, 377
AsuII TTCGAA 1 cut(s) 278
AsuNHI GCTAGC 1 cut(s) 131
BanI GGYRCC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 461
BbvI GCAGC 5 cut(s) 35, 204, 304, 362, 477
BceAI ACGGC 1 cut(s) 253
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 2 cut(s) 219, 519
BfaI CTAG 2 cut(s) 132, 377
BfmI CTRYAG 1 cut(s) 263
BfoI RGCGCY 1 cut(s) 46
BfrI CTTAAG 1 cut(s) 503
BisI GCNGC 6 cut(s) 46, 49, 193, 293, 351, 466
BlsI GCNGC 6 cut(s) 47, 50, 194, 294, 352, 467
Bme1390I CCNGG 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 6 cut(s) 72, 172, 321, 333, 363, 374
BmtI GCTAGC 1 cut(s) 135
BplI GAGNNNNNCTC 1 cut(s) 499
Bpu10I CCTNAGC 2 cut(s) 306, 461
Bpu14I TTCGAA 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 402
BsaHI GRCGYC 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 2 cut(s) 142, 490
Bse8I GATNNNNATC 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 324
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 2 cut(s) 142, 490
BseMII CTCAG 2 cut(s) 320, 475
BseNI ACTGG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 5 cut(s) 35, 204, 304, 362, 477
Bsh1236I CGCG 1 cut(s) 299
BshNI GGYRCC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 2 cut(s) 219, 519
Bso31I GGTCTC 1 cut(s) 219
Bsp119I TTCGAA 1 cut(s) 278
Bsp143I GATC 3 cut(s) 379, 397, 403
BspACI CCGC 4 cut(s) 46, 164, 299, 363
BspCNI CTCAG 2 cut(s) 319, 474
BspFNI CGCG 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 44
BspMAI CTGCAG 1 cut(s) 267
BspOI GCTAGC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 278
BspT107I GGYRCC 1 cut(s) 42
BspTI CTTAAG 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 219
BsrDI GCAATG 2 cut(s) 142, 490
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 3 cut(s) 379, 397, 403
BssNI GRCGYC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 456
BstACI GRCGYC 1 cut(s) 43
BstAFI CTTAAG 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 133, 297
BstDEI CTNAG 2 cut(s) 306, 461
BstF5I GGATG 1 cut(s) 324
BstFNI CGCG 1 cut(s) 299
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 2 cut(s) 45, 53
BstKTI GATC 3 cut(s) 382, 400, 406
BstMAI GTCTC 2 cut(s) 219, 519
BstMBI GATC 3 cut(s) 379, 397, 403
BstMWI GCNNNNNNNGC 3 cut(s) 141, 292, 340
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 1 cut(s) 263
BstUI CGCG 1 cut(s) 299
BstV1I GCAGC 5 cut(s) 35, 204, 304, 362, 477
BtgZI GCGATG 1 cut(s) 351
BtsCI GGATG 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 133, 297
CfoI GCGC 2 cut(s) 45, 53
Csp6I GTAC 1 cut(s) 457
CviAII CATG 1 cut(s) 18
CviJI RGCY 8 cut(s) 160, 195, 240, 295, 305, 311, 343, 468
CviKI_1 RGCY 8 cut(s) 160, 195, 240, 295, 305, 311, 343, 468
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 2 cut(s) 306, 461
DinI GGCGCC 1 cut(s) 44
DpnI GATC 3 cut(s) 381, 399, 405
DpnII GATC 3 cut(s) 379, 397, 403
DraIII CACNNNGTG 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 54
EgeI GGCGCC 1 cut(s) 44
EheI GGCGCC 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 21
FaiI YATR 5 cut(s) 19, 99, 204, 254, 520
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FatI CATG 1 cut(s) 17
FauI CCCGC 1 cut(s) 370
Fnu4HI GCNGC 6 cut(s) 46, 49, 193, 293, 351, 466
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 6 cut(s) 46, 49, 193, 293, 351, 466
FspBI CTAG 2 cut(s) 132, 377
GlaI GCGC 2 cut(s) 44, 52
GluI GCNGC 6 cut(s) 46, 49, 193, 293, 351, 466
HaeII RGCGCY 1 cut(s) 46
HapII CCGG 1 cut(s) 230
HhaI GCGC 2 cut(s) 45, 53
Hin1I GRCGYC 1 cut(s) 43
Hin1II CATG 1 cut(s) 21
Hin6I GCGC 2 cut(s) 43, 51
HinP1I GCGC 2 cut(s) 43, 51
HinfI GANTC 3 cut(s) 268, 280, 512
HpaII CCGG 1 cut(s) 230
HphI GGTGA 2 cut(s) 6, 377
Hpy166II GTNNAC 2 cut(s) 115, 235
Hpy188I TCNGA 3 cut(s) 88, 174, 408
Hpy188III TCNNGA 4 cut(s) 328, 395, 401, 434
Hpy8I GTNNAC 2 cut(s) 115, 235
HpyAV CCTTC 2 cut(s) 93, 425
HpyCH4III ACNGT 1 cut(s) 456
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 292, 340
HpyF3I CTNAG 2 cut(s) 306, 461
Hsp92I GRCGYC 1 cut(s) 43
Hsp92II CATG 1 cut(s) 21
HspAI GCGC 2 cut(s) 43, 51
KasI GGCGCC 1 cut(s) 42
Kzo9I GATC 3 cut(s) 379, 397, 403
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 7 cut(s) 140, 243, 275, 293, 341, 357, 493
Lsp1109I GCAGC 5 cut(s) 35, 204, 304, 362, 477
LweI GCATC 6 cut(s) 72, 172, 321, 333, 363, 374
MaeI CTAG 2 cut(s) 132, 377
MaeIII GTNAC 1 cut(s) 431
MalI GATC 3 cut(s) 381, 399, 405
MboI GATC 3 cut(s) 379, 397, 403
MboII GAAGA 1 cut(s) 468
Mly113I GGCGCC 1 cut(s) 43
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 5 cut(s) 33, 105, 170, 470, 510
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 48
MspCI CTTAAG 1 cut(s) 503
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 230
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 141, 292, 340
NarI GGCGCC 1 cut(s) 43
NciI CCSGG 1 cut(s) 230
NdeII GATC 3 cut(s) 379, 397, 403
NheI GCTAGC 1 cut(s) 131
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 431
NspV TTCGAA 1 cut(s) 278
PfeI GAWTC 2 cut(s) 268, 280
PkrI GCNGC 6 cut(s) 47, 50, 194, 294, 352, 467
PleI GAGTC 1 cut(s) 520
PluTI GGCGCC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 520
PspN4I GGNNCC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 267
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 6 cut(s) 46, 49, 193, 293, 351, 466
Sau3AI GATC 3 cut(s) 379, 397, 403
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 230
SetI ASST 7 cut(s) 123, 162, 197, 297, 359, 462, 470
SfaNI GCATC 6 cut(s) 72, 172, 321, 333, 363, 374
SfcI CTRYAG 1 cut(s) 263
SfoI GGCGCC 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
SsiI CCGC 4 cut(s) 46, 164, 299, 363
SspDI GGCGCC 1 cut(s) 42
SspMI CTAG 2 cut(s) 132, 377
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 456
TaqI TCGA 1 cut(s) 278
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 2 cut(s) 268, 280
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 5 cut(s) 48, 192, 292, 350, 465
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 158, 219
Vha464I CTTAAG 1 cut(s) 503
XspI CTAG 2 cut(s) 132, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.