FvH4_7g25110

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002494
Physical Location & Seq
Forward (+)
19223210 .. 19224081
872 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25110.t1

Sequence Viewer

Length: 522 bp
ATGGCGGGCGGAAATGGAACTTCACCATGCGCCTCTTGCAAGTTGCTGAGACGCCGATGCGCCCAAGACTGCATTTTCGCCCCTTATTTTCCCTCCGATGACCCCCACAAGTTCGCCATCGTGCACAAAGTCTTTGGTGCTAGCAATGTTAGCAAGATGTTACAGGAGCTTCCAGTTCACCAGAGAACAGATGCAGTGAGCAGTCTAGTGTATGAAGCCAATGCAAGAGTGAGAGACCCAGTTTATGGATGTGTTGGGGCCATTTCTTGCCTGCAAAACCAAGTCTCTGAGCTGCAAATGCAACTTGCTGTGGCTCAGGCCGAGATCCTCTGCATTCAGATGCAGCAAGAGTCTACGGTACTCCCTTCCCAGCCGATCGACTCGTGCATAGACAATGAGAGGACATATTTCCTCAACAACAGTCTCCCTCAGTACCTCAACTTTCCCTCTTCTAGTTCTAGCAATGTAATCCATGACTCTCTCAAGATGGAGGGCATCTTTGGACATGACATGGTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

174

Amino Acids

19.02

Weight (kDa)

5.65

Isoelectric Point (pI)

62.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 9 - 106 9.1e-43 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 245
AccI GTMKAC 1 cut(s) 353
AciI CCGC 2 cut(s) 5, 9
AclWI GGATC 1 cut(s) 319
AcyI GRCGYC 1 cut(s) 52
AfaI GTAC 2 cut(s) 360, 434
AfiI CCNNNNNNNGG 1 cut(s) 245
AluBI AGCT 2 cut(s) 169, 292
AluI AGCT 2 cut(s) 169, 292
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 4 cut(s) 43, 228, 289, 428
Alw44I GTGCAC 1 cut(s) 122
AlwI GGATC 1 cut(s) 319
AoxI GGCC 2 cut(s) 258, 318
ApaLI GTGCAC 1 cut(s) 122
ApeKI GCWGC 2 cut(s) 292, 343
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AspLEI GCGC 2 cut(s) 32, 62
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 15, 170
AsuNHI GCTAGC 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 126
BauI CACGAG 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 279, 355
BccI CCATC 2 cut(s) 125, 481
BcoDI GTCTC 4 cut(s) 43, 228, 289, 428
BfaI CTAG 4 cut(s) 141, 206, 453, 459
BisI GCNGC 2 cut(s) 293, 344
BlsI GCNGC 2 cut(s) 294, 345
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 259
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 4 cut(s) 47, 181, 330, 504
BmtI GCTAGC 1 cut(s) 144
BmuI ACTGGG 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 467
BsaHI GRCGYC 1 cut(s) 52
BsaI GGTCTC 1 cut(s) 228
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 173, 239
Bse3DI GCAATG 2 cut(s) 151, 469
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 2 cut(s) 151, 469
BseMII CTCAG 4 cut(s) 38, 279, 329, 443
BseNI ACTGG 2 cut(s) 173, 239
BseSI GKGCMC 1 cut(s) 126
BseXI GCAGC 2 cut(s) 279, 355
BseYI CCCAGC 1 cut(s) 369
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 2 cut(s) 260, 320
BsiEI CGRYCG 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 4 cut(s) 43, 228, 289, 428
BsmBI CGTCTC 1 cut(s) 43
BsmI GAATGC 1 cut(s) 333
BsnI GGCC 2 cut(s) 260, 320
Bso31I GGTCTC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 2 cut(s) 324, 375
BspACI CCGC 2 cut(s) 5, 9
BspANI GGCC 2 cut(s) 260, 320
BspCNI CTCAG 4 cut(s) 39, 280, 328, 442
BspLI GGNNCC 1 cut(s) 259
BspOI GCTAGC 1 cut(s) 144
BspPI GGATC 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 228
BsrDI GCAATG 2 cut(s) 151, 469
BsrI ACTGG 2 cut(s) 173, 239
BssMI GATC 2 cut(s) 324, 375
BssNI GRCGYC 1 cut(s) 52
BssSI CACGAG 1 cut(s) 382
Bst2BI CACGAG 1 cut(s) 382
Bst4CI ACNGT 2 cut(s) 358, 422
Bst6I CTCTTC 1 cut(s) 454
BstACI GRCGYC 1 cut(s) 52
BstC8I GCNNGC 3 cut(s) 7, 142, 272
BstDEI CTNAG 4 cut(s) 47, 288, 315, 429
BstF5I GGATG 1 cut(s) 254
BstHHI GCGC 2 cut(s) 32, 62
BstKTI GATC 2 cut(s) 327, 378
BstMAI GTCTC 4 cut(s) 43, 228, 289, 428
BstMBI GATC 2 cut(s) 324, 375
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 3 cut(s) 36, 150, 298
BstSLI GKGCMC 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 279, 355
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BsuRI GGCC 2 cut(s) 260, 320
BtsCI GGATG 1 cut(s) 254
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 3 cut(s) 7, 142, 272
CfoI GCGC 2 cut(s) 32, 62
Cfr13I GGNCC 1 cut(s) 258
CseI GACGC 1 cut(s) 60
Csp6I GTAC 2 cut(s) 359, 433
CviAII CATG 4 cut(s) 27, 473, 506, 511
CviJI RGCY 7 cut(s) 169, 218, 260, 292, 314, 320, 373
CviKI_1 RGCY 7 cut(s) 169, 218, 260, 292, 314, 320, 373
CviQI GTAC 2 cut(s) 359, 433
DdeI CTNAG 4 cut(s) 47, 288, 315, 429
DpnI GATC 2 cut(s) 326, 377
DpnII GATC 2 cut(s) 324, 375
Eam1104I CTCTTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 454
EciI GGCGGA 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 228
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 4 cut(s) 30, 476, 509, 514
FaiI YATR 8 cut(s) 28, 213, 246, 389, 406, 474, 507, 512
FatI CATG 4 cut(s) 26, 472, 505, 510
FblI GTMKAC 1 cut(s) 353
Fnu4HI GCNGC 2 cut(s) 293, 344
FokI GGATG 1 cut(s) 261
Fsp4HI GCNGC 2 cut(s) 293, 344
FspBI CTAG 4 cut(s) 141, 206, 453, 459
GlaI GCGC 2 cut(s) 31, 61
GluI GCNGC 2 cut(s) 293, 344
GsaI CCCAGC 1 cut(s) 373
HaeIII GGCC 2 cut(s) 260, 320
HgaI GACGC 1 cut(s) 60
HhaI GCGC 2 cut(s) 32, 62
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 4 cut(s) 30, 476, 509, 514
Hin6I GCGC 2 cut(s) 30, 60
HinP1I GCGC 2 cut(s) 30, 60
HinfI GANTC 3 cut(s) 350, 380, 476
HphI GGTGA 2 cut(s) 15, 170
Hpy166II GTNNAC 3 cut(s) 124, 178, 354
Hpy188I TCNGA 3 cut(s) 97, 289, 339
Hpy188III TCNNGA 1 cut(s) 484
Hpy8I GTNNAC 3 cut(s) 124, 178, 354
HpyAV CCTTC 1 cut(s) 375
HpyCH4III ACNGT 2 cut(s) 358, 422
HpyF10VI GCNNNNNNNGC 3 cut(s) 36, 150, 298
HpyF3I CTNAG 4 cut(s) 47, 288, 315, 429
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 4 cut(s) 30, 476, 509, 514
HspAI GCGC 2 cut(s) 30, 60
Kzo9I GATC 2 cut(s) 324, 375
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 7 cut(s) 149, 186, 194, 252, 284, 302, 383
Lsp1109I GCAGC 2 cut(s) 279, 355
LweI GCATC 4 cut(s) 47, 181, 330, 504
MaeI CTAG 4 cut(s) 141, 206, 453, 459
MaeIII GTNAC 1 cut(s) 159
MalI GATC 2 cut(s) 326, 377
MboI GATC 2 cut(s) 324, 375
MboII GAAGA 1 cut(s) 441
MflI RGATCY 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 126
MlyI GAGTC 3 cut(s) 359, 374, 470
MnlI CCTC 9 cut(s) 43, 103, 338, 393, 422, 438, 446, 457, 484
MseI TTAA 1 cut(s) 520
MslI CAYNNNNRTG 1 cut(s) 338
Mva1269I GAATGC 1 cut(s) 333
MwoI GCNNNNNNNGC 3 cut(s) 36, 150, 298
NdeII GATC 2 cut(s) 324, 375
NheI GCTAGC 1 cut(s) 140
NlaIII CATG 4 cut(s) 30, 476, 509, 514
NlaIV GGNNCC 1 cut(s) 259
NmeAIII GCCGAG 1 cut(s) 346
PctI GAATGC 1 cut(s) 333
PflFI GACNNNGTC 1 cut(s) 512
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 2 cut(s) 294, 345
Ple19I CGATCG 1 cut(s) 378
PleI GAGTC 3 cut(s) 358, 374, 470
PpsI GAGTC 3 cut(s) 358, 374, 470
PspFI CCCAGC 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 258
PsuI RGATCY 1 cut(s) 324
PsyI GACNNNGTC 1 cut(s) 512
PvuI CGATCG 1 cut(s) 378
RsaI GTAC 2 cut(s) 360, 434
RsaNI GTAC 2 cut(s) 359, 433
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 1 cut(s) 520
SatI GCNGC 2 cut(s) 293, 344
Sau3AI GATC 2 cut(s) 324, 375
Sau96I GGNCC 1 cut(s) 258
SchI GAGTC 3 cut(s) 359, 374, 470
SduI GDGCHC 1 cut(s) 126
SetI ASST 3 cut(s) 171, 294, 438
SfaNI GCATC 4 cut(s) 47, 181, 330, 504
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
SsiI CCGC 2 cut(s) 5, 9
SspMI CTAG 4 cut(s) 141, 206, 453, 459
TaaI ACNGT 2 cut(s) 358, 422
TaqI TCGA 1 cut(s) 378
Tru1I TTAA 1 cut(s) 520
Tru9I TTAA 1 cut(s) 520
TscAI CASTG 1 cut(s) 201
TseI GCWGC 2 cut(s) 292, 343
TspDTI ATGAA 1 cut(s) 228
TspRI CASTG 1 cut(s) 201
Tth111I GACNNNGTC 1 cut(s) 512
Van91I CCANNNNNTGG 1 cut(s) 245
VneI GTGCAC 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 353
XspI CTAG 4 cut(s) 141, 206, 453, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.