Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001018.1

Orthogroup ID

OG0002494

Physical Location & Seq

Genomic Coordinates Reverse (-)

82086 .. 82725

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001018.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgggcggaaatggaacttcaccgtgcgcctcttgcaagttgctgagacgccgatgcgcccaagactgcatttttgccccttactttccctccgatgacccccacaagttcgccatcgtgcacaaagtcttcggtgctagcaatgttagcaagatgttacaggagcttccagttcaccagagaacagatgcagtgagcagtctagtgtatgaagccaatgcaagagtgagagacccagtgtatgggtgtgtcggggccatttcttgcctgcaaaaccaagtctctgagctgcaaatgcaacttgctggggctcaggccgagatccattgcattcagatgcagcaagagcctatggtactcccttcccagcagattgacacgtgcacagacgatgagaggacatatttcctcaacaacaatctccctcagtacctcaactttccctcttctagttctggcaatgtaatccatgactctcaagagggagggcacctttggacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

167

Amino Acids

18.46

Weight (kDa)

5.58

Isoelectric Point (pI)

60.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30130
fragaria_vesca	FvH4_3g39540 FvH4_7g25110
malus_domestica	MD01G1157900.v1.1 MD03G1060100.v1.1 MD07G1226600.v1.1 MD11G1063200.v1.1
prunus_persica	Prupe.2G256200_v2.0.a1 Prupe.6G050400_v2.0.a1
pyrus_communis	pycom07g20510 pycom11g05290
rosa_chinensis	RchiOBHm_Chr1g0370961 RchiOBHm_Chr1g0370991 RchiOBHm_Chr5g0071311
rosa_laevigata	RLG00000026992 RLG00000026995 RLG00000036201
rosa_multiflora	Rmu_co8489701.1_g000001 Rmu_sc0001018.1_g000013 Rmu_sc0001018.1_g000019 Rmu_sc0006990.1_g000009
rosa_roxburghii	Rroxscaffold_1G00009830 Rroxscaffold_4G00286050 Rroxscaffold_4G00286080
rosa_rugosa	Rorug01G0360300 Rorug01G0360600 Rorug05G0411200
rosa_samantha	Rh1AG370700 Rh1BG334300 Rh1BG334500 Rh1CG347600 Rh1CG347800 Rh1DG365500 Rh1DG365700 Rh5AG467600 Rh5BG486100 Rh5CG510500 Rh5DG497300
rosa_wichuraiana	Rw1G032620 Rw1G032640 Rw5G043440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	489
AccB7I	CCANNNNNTGG	1 cut(s)	242
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	316
AcvI	CACGTG	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	2 cut(s)	357, 431
AfiI	CCNNNNNNNGG	1 cut(s)	242
AflIII	ACRYGT	1 cut(s)	378
AluBI	AGCT	2 cut(s)	166, 289
AluI	AGCT	2 cut(s)	166, 289
Alw21I	GWGCWC	2 cut(s)	123, 386
Alw26I	GTCTC	3 cut(s)	40, 225, 286
Alw44I	GTGCAC	2 cut(s)	119, 382
AlwI	GGATC	1 cut(s)	316
AoxI	GGCC	2 cut(s)	255, 315
ApaLI	GTGCAC	2 cut(s)	119, 382
ApeKI	GCWGC	2 cut(s)	289, 340
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspLEI	GCGC	2 cut(s)	29, 59
AspS9I	GGNCC	1 cut(s)	255
AsuHPI	GGTGA	2 cut(s)	12, 167
AsuNHI	GCTAGC	1 cut(s)	137
BaeGI	GKGCMC	3 cut(s)	123, 386, 492
BanI	GGYRCC	1 cut(s)	489
BanII	GRGCYC	1 cut(s)	313
BbrPI	CACGTG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	121
Bbv12I	GWGCWC	2 cut(s)	123, 386
BbvI	GCAGC	2 cut(s)	276, 352
BccI	CCATC	1 cut(s)	122
BcoDI	GTCTC	3 cut(s)	40, 225, 286
BfaI	CTAG	3 cut(s)	138, 203, 450
BisI	GCNGC	2 cut(s)	290, 341
BlsI	GCNGC	2 cut(s)	291, 342
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	2 cut(s)	256, 491
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	3 cut(s)	44, 178, 327
BmtI	GCTAGC	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	230
BpiI	GAAGAC	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	462
BsaAI	YACGTR	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
Bse1I	ACTGG	2 cut(s)	170, 236
Bse3DI	GCAATG	3 cut(s)	148, 325, 466
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMI	GCAATG	3 cut(s)	148, 325, 466
BseMII	CTCAG	4 cut(s)	35, 276, 326, 440
BseNI	ACTGG	2 cut(s)	170, 236
BseSI	GKGCMC	3 cut(s)	123, 386, 492
BseXI	GCAGC	2 cut(s)	276, 352
BseYI	CCCAGC	2 cut(s)	305, 366
BshFI	GGCC	2 cut(s)	257, 317
BshNI	GGYRCC	1 cut(s)	489
BsiHKAI	GWGCWC	2 cut(s)	123, 386
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	3 cut(s)	40, 225, 286
BsmBI	CGTCTC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	257, 317
Bso31I	GGTCTC	1 cut(s)	225
Bsp1286I	GDGCHC	4 cut(s)	123, 313, 386, 492
Bsp143I	GATC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	257, 317
BspCNI	CTCAG	4 cut(s)	36, 277, 325, 439
BspLI	GGNNCC	2 cut(s)	256, 491
BspOI	GCTAGC	1 cut(s)	141
BspPI	GGATC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	489
BspTNI	GGTCTC	1 cut(s)	225
BsrDI	GCAATG	3 cut(s)	148, 325, 466
BsrI	ACTGG	2 cut(s)	170, 236
BssMI	GATC	1 cut(s)	321
BssNI	GRCGYC	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	24
Bst6I	CTCTTC	1 cut(s)	451
BstACI	GRCGYC	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	139, 269
BstDEI	CTNAG	4 cut(s)	44, 285, 312, 426
BstHHI	GCGC	2 cut(s)	29, 59
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	3 cut(s)	40, 225, 286
BstMBI	GATC	1 cut(s)	321
BstMWI	GCNNNNNNNGC	4 cut(s)	33, 147, 295, 346
BstSLI	GKGCMC	3 cut(s)	123, 386, 492
BstV1I	GCAGC	2 cut(s)	276, 352
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	257, 317
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 243
Cac8I	GCNNGC	2 cut(s)	139, 269
CfoI	GCGC	2 cut(s)	29, 59
Cfr13I	GGNCC	1 cut(s)	255
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	356, 430
CviAII	CATG	2 cut(s)	470, 501
CviJI	RGCY	7 cut(s)	166, 215, 257, 289, 311, 317, 349
CviKI_1	RGCY	7 cut(s)	166, 215, 257, 289, 311, 317, 349
CviQI	GTAC	2 cut(s)	356, 430
DdeI	CTNAG	4 cut(s)	44, 285, 312, 426
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	225
Eco72I	CACGTG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	313
Esp3I	CGTCTC	1 cut(s)	40
FaeI	CATG	2 cut(s)	473, 504
FaiI	YATR	6 cut(s)	210, 243, 353, 403, 471, 502
FatI	CATG	2 cut(s)	469, 500
Fnu4HI	GCNGC	2 cut(s)	290, 341
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	2 cut(s)	290, 341
FspBI	CTAG	3 cut(s)	138, 203, 450
GlaI	GCGC	2 cut(s)	28, 58
GluI	GCNGC	2 cut(s)	290, 341
GsaI	CCCAGC	2 cut(s)	309, 370
HaeIII	GGCC	2 cut(s)	257, 317
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	2 cut(s)	29, 59
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	2 cut(s)	473, 504
Hin6I	GCGC	2 cut(s)	27, 57
HinP1I	GCGC	2 cut(s)	27, 57
HinfI	GANTC	1 cut(s)	473
HphI	GGTGA	2 cut(s)	12, 167
Hpy166II	GTNNAC	3 cut(s)	121, 175, 384
Hpy188I	TCNGA	3 cut(s)	94, 286, 336
Hpy188III	TCNNGA	1 cut(s)	479
Hpy8I	GTNNAC	3 cut(s)	121, 175, 384
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4IV	ACGT	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	4 cut(s)	33, 147, 295, 346
HpyF3I	CTNAG	4 cut(s)	44, 285, 312, 426
HpySE526I	ACGT	1 cut(s)	380
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	2 cut(s)	473, 504
HspAI	GCGC	2 cut(s)	27, 57
Kzo9I	GATC	1 cut(s)	321
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	9 cut(s)	146, 183, 191, 249, 281, 291, 299, 380, 441
Lsp1109I	GCAGC	2 cut(s)	276, 352
LweI	GCATC	3 cut(s)	44, 178, 327
MaeI	CTAG	3 cut(s)	138, 203, 450
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	2 cut(s)	121, 438
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	4 cut(s)	123, 313, 386, 492
MlyI	GAGTC	1 cut(s)	467
MnlI	CCTC	9 cut(s)	40, 100, 390, 419, 435, 443, 454, 475, 479
MslI	CAYNNNNRTG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	330
MwoI	GCNNNNNNNGC	4 cut(s)	33, 147, 295, 346
NdeII	GATC	1 cut(s)	321
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	2 cut(s)	473, 504
NlaIV	GGNNCC	2 cut(s)	256, 491
NmeAIII	GCCGAG	1 cut(s)	343
PctI	GAATGC	1 cut(s)	330
PflMI	CCANNNNNTGG	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	291, 342
PleI	GAGTC	1 cut(s)	467
PmaCI	CACGTG	1 cut(s)	381
PmlI	CACGTG	1 cut(s)	381
PpsI	GAGTC	1 cut(s)	467
Ppu21I	YACGTR	1 cut(s)	381
PspCI	CACGTG	1 cut(s)	381
PspFI	CCCAGC	2 cut(s)	305, 366
PspN4I	GGNNCC	2 cut(s)	256, 491
PspPI	GGNCC	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	321
RsaI	GTAC	2 cut(s)	357, 431
RsaNI	GTAC	2 cut(s)	356, 430
RseI	CAYNNNNRTG	1 cut(s)	335
SatI	GCNGC	2 cut(s)	290, 341
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	1 cut(s)	255
SchI	GAGTC	1 cut(s)	467
SduI	GDGCHC	4 cut(s)	123, 313, 386, 492
SetI	ASST	5 cut(s)	168, 291, 383, 435, 495
SfaNI	GCATC	3 cut(s)	44, 178, 327
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	3 cut(s)	138, 203, 450
TaaI	ACNGT	1 cut(s)	24
TaiI	ACGT	1 cut(s)	383
TscAI	CASTG	2 cut(s)	198, 243
TseI	GCWGC	2 cut(s)	289, 340
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	2 cut(s)	198, 243
Van91I	CCANNNNNTGG	1 cut(s)	242
VneI	GTGCAC	2 cut(s)	119, 382
XspI	CTAG	3 cut(s)	138, 203, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.