Rroxscaffold_4G00286050

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002494
Physical Location & Seq
Forward (+)
7211873 .. 7212738
866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00286050.1

Sequence Viewer

Length: 504 bp
ATGGGCGGAAGTGGAACTTCACCGTGCGCCTCTTGCAAGTTGCTGAGACGCCGATGCGCCCAAGACTGCATTTTTGCCCCTTACTTTCCCTCCGATGACCCCCACAAGTTCGCCATCGTGCACAAAGTCTTTGGTGCTAGCAATGTTAGCAAGATATTACAGGAGCTTCCAGTTCACCAGAGAACAGATGCAGTGAGCAGTCTAGTGTATGAAGCCAATGCAAGAGTGAGAAACCCAGTGTATGGGTGTGTTGGGGCCATTTCTTGCCTGCAAAACCAAGTCTCTGAGCTGCAAATGCAACTTGCTGTGGCTCAGGCCGAGATCCTTAGCATTCAGATGCAGCAAGAGCCTATGGTACTCCCTTCCCAGCAGATTGACACGTGCATAGACGATGAGAGGACATATTTCCTCAACAACAATCTCCCTCAGTACCTCAACTTTCCCTCTTCTAGTTCTGGCAATGTAATCCATGACTCTCAAGAGGGAGGGCATCTTTGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

167

Amino Acids

18.43

Weight (kDa)

5.64

Isoelectric Point (pI)

60.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 8 - 105 3.3e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 242
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 316
AcvI CACGTG 1 cut(s) 381
AcyI GRCGYC 1 cut(s) 49
AfaI GTAC 2 cut(s) 357, 431
AfiI CCNNNNNNNGG 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 378
AluBI AGCT 2 cut(s) 166, 289
AluI AGCT 2 cut(s) 166, 289
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 2 cut(s) 40, 286
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 1 cut(s) 316
AoxI GGCC 2 cut(s) 255, 315
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 289, 340
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspLEI GCGC 2 cut(s) 29, 59
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 12, 167
AsuNHI GCTAGC 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 123
BbrPI CACGTG 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 276, 352
BccI CCATC 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 40, 286
BfaI CTAG 3 cut(s) 138, 203, 450
BisI GCNGC 2 cut(s) 290, 341
BlsI GCNGC 2 cut(s) 291, 342
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 256
BmrI ACTGGG 1 cut(s) 230
BmsI GCATC 4 cut(s) 44, 178, 327, 499
BmtI GCTAGC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 230
Bpu10I CCTNAGC 2 cut(s) 312, 326
BpuEI CTTGAG 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 170, 236
Bse3DI GCAATG 2 cut(s) 148, 466
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 2 cut(s) 148, 466
BseMII CTCAG 4 cut(s) 35, 276, 326, 440
BseNI ACTGG 2 cut(s) 170, 236
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 2 cut(s) 276, 352
BseYI CCCAGC 1 cut(s) 366
BshFI GGCC 2 cut(s) 257, 317
BsiHKAI GWGCWC 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 2 cut(s) 40, 286
BsmBI CGTCTC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 2 cut(s) 257, 317
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 321
BspACI CCGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 257, 317
BspCNI CTCAG 4 cut(s) 36, 277, 325, 439
BspLI GGNNCC 1 cut(s) 256
BspOI GCTAGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 316
BsrDI GCAATG 2 cut(s) 148, 466
BsrI ACTGG 2 cut(s) 170, 236
BssMI GATC 1 cut(s) 321
BssNI GRCGYC 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 24
Bst6I CTCTTC 1 cut(s) 451
BstACI GRCGYC 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 381
BstC8I GCNNGC 2 cut(s) 139, 269
BstDEI CTNAG 5 cut(s) 44, 285, 312, 326, 426
BstHHI GCGC 2 cut(s) 29, 59
BstKTI GATC 1 cut(s) 324
BstMAI GTCTC 2 cut(s) 40, 286
BstMBI GATC 1 cut(s) 321
BstMWI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 276, 352
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BsuRI GGCC 2 cut(s) 257, 317
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 2 cut(s) 198, 243
Cac8I GCNNGC 2 cut(s) 139, 269
CfoI GCGC 2 cut(s) 29, 59
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 356, 430
CviAII CATG 2 cut(s) 470, 501
CviJI RGCY 7 cut(s) 166, 215, 257, 289, 311, 317, 349
CviKI_1 RGCY 7 cut(s) 166, 215, 257, 289, 311, 317, 349
CviQI GTAC 2 cut(s) 356, 430
DdeI CTNAG 5 cut(s) 44, 285, 312, 326, 426
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 451
EciI GGCGGA 1 cut(s) 21
Eco72I CACGTG 1 cut(s) 381
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 2 cut(s) 473, 504
FaiI YATR 7 cut(s) 210, 243, 353, 386, 403, 471, 502
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 2 cut(s) 469, 500
Fnu4HI GCNGC 2 cut(s) 290, 341
Fsp4HI GCNGC 2 cut(s) 290, 341
FspBI CTAG 3 cut(s) 138, 203, 450
GlaI GCGC 2 cut(s) 28, 58
GluI GCNGC 2 cut(s) 290, 341
GsaI CCCAGC 1 cut(s) 370
HaeIII GGCC 2 cut(s) 257, 317
HgaI GACGC 1 cut(s) 57
HhaI GCGC 2 cut(s) 29, 59
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 2 cut(s) 473, 504
Hin6I GCGC 2 cut(s) 27, 57
HinP1I GCGC 2 cut(s) 27, 57
HinfI GANTC 1 cut(s) 473
HphI GGTGA 2 cut(s) 12, 167
Hpy166II GTNNAC 2 cut(s) 121, 175
Hpy188I TCNGA 3 cut(s) 94, 286, 336
Hpy188III TCNNGA 1 cut(s) 479
Hpy8I GTNNAC 2 cut(s) 121, 175
HpyAV CCTTC 1 cut(s) 372
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4IV ACGT 1 cut(s) 380
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
HpyF3I CTNAG 5 cut(s) 44, 285, 312, 326, 426
HpySE526I ACGT 1 cut(s) 380
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 2 cut(s) 473, 504
HspAI GCGC 2 cut(s) 27, 57
Kzo9I GATC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 8 cut(s) 146, 183, 191, 249, 281, 299, 380, 441
Lsp1109I GCAGC 2 cut(s) 276, 352
LweI GCATC 4 cut(s) 44, 178, 327, 499
MaeI CTAG 3 cut(s) 138, 203, 450
MaeII ACGT 1 cut(s) 380
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MboII GAAGA 1 cut(s) 438
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 1 cut(s) 123
MlyI GAGTC 1 cut(s) 467
MnlI CCTC 9 cut(s) 40, 100, 390, 419, 435, 443, 454, 475, 479
MslI CAYNNNNRTG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 330
MwoI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
NdeII GATC 1 cut(s) 321
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 2 cut(s) 473, 504
NlaIV GGNNCC 1 cut(s) 256
NmeAIII GCCGAG 1 cut(s) 343
PctI GAATGC 1 cut(s) 330
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 2 cut(s) 291, 342
PleI GAGTC 1 cut(s) 467
PmaCI CACGTG 1 cut(s) 381
PmlI CACGTG 1 cut(s) 381
PpsI GAGTC 1 cut(s) 467
Ppu21I YACGTR 1 cut(s) 381
PspCI CACGTG 1 cut(s) 381
PspFI CCCAGC 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 255
PsuI RGATCY 1 cut(s) 321
RsaI GTAC 2 cut(s) 357, 431
RsaNI GTAC 2 cut(s) 356, 430
RseI CAYNNNNRTG 1 cut(s) 335
SatI GCNGC 2 cut(s) 290, 341
Sau3AI GATC 1 cut(s) 321
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 467
SduI GDGCHC 1 cut(s) 123
SetI ASST 4 cut(s) 168, 291, 383, 435
SfaNI GCATC 4 cut(s) 44, 178, 327, 499
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 477
SmoI CTYRAG 1 cut(s) 477
SsiI CCGC 1 cut(s) 6
SspMI CTAG 3 cut(s) 138, 203, 450
TaaI ACNGT 1 cut(s) 24
TaiI ACGT 1 cut(s) 383
TscAI CASTG 2 cut(s) 198, 243
TseI GCWGC 2 cut(s) 289, 340
TspDTI ATGAA 1 cut(s) 225
TspRI CASTG 2 cut(s) 198, 243
Van91I CCANNNNNTGG 1 cut(s) 242
VneI GTGCAC 1 cut(s) 119
XspI CTAG 3 cut(s) 138, 203, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.