MD11G1063200.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002494
Physical Location & Seq
Reverse (-)
5480264 .. 5481344
1081 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1063200.v1.1.491

Sequence Viewer

Length: 531 bp
ATGGGATCGGGCTCTTCCCCGTGTGCTTCTTGCAAGTTGTTGAGGCGCCGGTGCGCCAAAGACTGCATCTTTGCCCCTTACTTCCCTTCTGATGACCCTCATAAGTTTGCCATTGTTCACAAGGTCTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTTCCCATTCATCAAAGAGGAGATGCTGTGAGCAGTTTGGTTTATGAAGCAAATGCAAGAGTGAGAGACCCGGTATACGGGTGCGTTGGGGCAATTTCTTTCCTGCAGAATCAAGTTTCTCAGCTGCAAATGCAGCTTGCAGTGGCTCAGGCAGAGATACTTTGCATCCAGATGCAACAGGAACCTGTAGCCTTACCAACCCAGATTGATCAACACCAACACCAACACCATCATCAAGATCATGACCAGAAGTCCCTTCTTTTATCCAACAGTGACATCAATAGCATTCCACATCAATACTTCAGCAGCTTTGCTTCTCCTAGCAATGTAATCCAAGACCCTCTTAAAAGAGAGTCTCTTTGGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

177

Amino Acids

19.68

Weight (kDa)

6.78

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 7 - 104 1.8e-42 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 45
AccI GTMKAC 1 cut(s) 237
AclWI GGATC 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 448
AcyI GRCGYC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 239
AhdI GACNNNNNGTC 1 cut(s) 412
AluBI AGCT 4 cut(s) 163, 286, 298, 471
AluI AGCT 4 cut(s) 163, 286, 298, 471
Alw26I GTCTC 2 cut(s) 222, 522
AlwI GGATC 1 cut(s) 13
ApeKI GCWGC 3 cut(s) 286, 295, 468
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspLEI GCGC 2 cut(s) 48, 56
AsuC2I CCSGG 1 cut(s) 233
AsuNHI GCTAGC 1 cut(s) 134
BanI GGYRCC 1 cut(s) 45
BanII GRGCYC 1 cut(s) 14
BbvI GCAGC 3 cut(s) 273, 307, 480
BccI CCATC 1 cut(s) 399
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 222, 522
BfaI CTAG 2 cut(s) 135, 483
BfmI CTRYAG 2 cut(s) 266, 348
BfoI RGCGCY 1 cut(s) 49
BisI GCNGC 3 cut(s) 287, 296, 469
BlsI GCNGC 3 cut(s) 288, 297, 470
Bme1390I CCNGG 1 cut(s) 233
BmeRI GACNNNNNGTC 1 cut(s) 412
BmiI GGNNCC 2 cut(s) 47, 345
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 4 cut(s) 75, 175, 324, 336
BmtI GCTAGC 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 48
Bse3DI GCAATG 2 cut(s) 145, 493
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 2 cut(s) 145, 493
BseMII CTCAG 2 cut(s) 296, 323
BseRI GAGGAG 1 cut(s) 195
BseXI GCAGC 3 cut(s) 273, 307, 480
BshNI GGYRCC 1 cut(s) 45
BsiSI CCGG 2 cut(s) 49, 233
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 2 cut(s) 222, 522
BsmFI GGGAC 1 cut(s) 400
BsmI GAATGC 1 cut(s) 447
Bso31I GGTCTC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 3 cut(s) 5, 370, 400
BspCNI CTCAG 2 cut(s) 295, 322
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 47, 345
BspMAI CTGCAG 1 cut(s) 270
BspOI GCTAGC 1 cut(s) 138
BspPI GGATC 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 222
BsrDI GCAATG 2 cut(s) 145, 493
BsrFI RCCGGY 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 48
BssMI GATC 3 cut(s) 5, 370, 400
BssNAI GTATAC 1 cut(s) 238
BssNI GRCGYC 1 cut(s) 46
Bst1107I GTATAC 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 434
Bst6I CTCTTC 1 cut(s) 19
BstACI GRCGYC 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 136, 300
BstDEI CTNAG 2 cut(s) 282, 309
BstF5I GGATG 1 cut(s) 327
BstH2I RGCGCY 1 cut(s) 49
BstHHI GCGC 2 cut(s) 48, 56
BstKTI GATC 3 cut(s) 8, 373, 403
BstMAI GTCTC 2 cut(s) 222, 522
BstMBI GATC 3 cut(s) 5, 370, 400
BstMWI GCNNNNNNNGC 3 cut(s) 144, 292, 295
BstSCI CCNGG 1 cut(s) 231
BstSFI CTRYAG 2 cut(s) 266, 348
BstV1I GCAGC 3 cut(s) 273, 307, 480
BstZ17I GTATAC 1 cut(s) 238
BtsCI GGATG 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 309, 439
Cac8I GCNNGC 2 cut(s) 136, 300
CciI TCATGA 1 cut(s) 403
CfoI GCGC 2 cut(s) 48, 56
Cfr10I RCCGGY 1 cut(s) 48
CviAII CATG 1 cut(s) 404
CviJI RGCY 7 cut(s) 12, 163, 286, 298, 308, 353, 471
CviKI_1 RGCY 7 cut(s) 12, 163, 286, 298, 308, 353, 471
DdeI CTNAG 2 cut(s) 282, 309
DinI GGCGCC 1 cut(s) 47
DpnI GATC 3 cut(s) 7, 372, 402
DpnII GATC 3 cut(s) 5, 370, 400
DriI GACNNNNNGTC 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 19
Eam1105I GACNNNNNGTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 19
Eco24I GRGCYC 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 222
Eco57I CTGAAG 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 14
EgeI GGCGCC 1 cut(s) 47
EheI GGCGCC 1 cut(s) 47
FaeI CATG 1 cut(s) 407
FaiI YATR 4 cut(s) 102, 207, 238, 405
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 1 cut(s) 400
FatI CATG 1 cut(s) 403
FbaI TGATCA 1 cut(s) 370
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 3 cut(s) 287, 296, 469
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 3 cut(s) 287, 296, 469
FspBI CTAG 2 cut(s) 135, 483
GlaI GCGC 2 cut(s) 47, 55
GluI GCNGC 3 cut(s) 287, 296, 469
HaeII RGCGCY 1 cut(s) 49
HapII CCGG 2 cut(s) 49, 233
HhaI GCGC 2 cut(s) 48, 56
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 1 cut(s) 407
Hin6I GCGC 2 cut(s) 46, 54
HinP1I GCGC 2 cut(s) 46, 54
HinfI GANTC 2 cut(s) 271, 515
HpaII CCGG 2 cut(s) 49, 233
Hpy166II GTNNAC 2 cut(s) 118, 238
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 3 cut(s) 331, 398, 404
Hpy8I GTNNAC 2 cut(s) 118, 238
HpyAV CCTTC 2 cut(s) 96, 428
HpyCH4III ACNGT 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 292, 295
HpyF3I CTNAG 2 cut(s) 282, 309
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 1 cut(s) 407
HspAI GCGC 2 cut(s) 46, 54
KasI GGCGCC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 3 cut(s) 5, 370, 400
LguI GCTCTTC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 3 cut(s) 273, 307, 480
LweI GCATC 4 cut(s) 75, 175, 324, 336
MaeI CTAG 2 cut(s) 135, 483
MaeIII GTNAC 1 cut(s) 434
MalI GATC 3 cut(s) 7, 372, 402
MboI GATC 3 cut(s) 5, 370, 400
MboII GAAGA 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 1 cut(s) 255
Mly113I GGCGCC 1 cut(s) 46
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 4 cut(s) 36, 108, 173, 513
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 2 cut(s) 49, 233
MspR9I CCNGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 447
MwoI GCNNNNNNNGC 3 cut(s) 144, 292, 295
NarI GGCGCC 1 cut(s) 46
NciI CCSGG 1 cut(s) 233
NdeII GATC 3 cut(s) 5, 370, 400
NheI GCTAGC 1 cut(s) 134
NlaIII CATG 1 cut(s) 407
NlaIV GGNNCC 2 cut(s) 47, 345
NmuCI GTSAC 1 cut(s) 434
PagI TCATGA 1 cut(s) 403
PciSI GCTCTTC 1 cut(s) 19
PctI GAATGC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 3 cut(s) 288, 297, 470
PleI GAGTC 1 cut(s) 523
PluTI GGCGCC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 523
PspN4I GGNNCC 2 cut(s) 47, 345
PstI CTGCAG 1 cut(s) 270
PvuII CAGCTG 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 332
SapI GCTCTTC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 3 cut(s) 287, 296, 469
Sau3AI GATC 3 cut(s) 5, 370, 400
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 1 cut(s) 14
SetI ASST 6 cut(s) 126, 165, 288, 300, 349, 473
SfaNI GCATC 4 cut(s) 75, 175, 324, 336
SfcI CTRYAG 2 cut(s) 266, 348
SfoI GGCGCC 1 cut(s) 47
SgrAI CRCCGGYG 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 332
Sse9I AATT 1 cut(s) 255
SspDI GGCGCC 1 cut(s) 45
SspMI CTAG 2 cut(s) 135, 483
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 434
TasI AATT 1 cut(s) 255
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 2 cut(s) 309, 439
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 3 cut(s) 286, 295, 468
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 2 cut(s) 161, 222
TspRI CASTG 2 cut(s) 309, 439
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 2 cut(s) 135, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.