pycom07g20510

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0002494
Physical Location & Seq
Forward (+)
22570715 .. 22571171
457 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g20510.1

Sequence Viewer

Length: 243 bp
ATGGCCGGAACTTCGCCGTGCGCTTCCTGCAAGTTGCTGCGACGCCGATGCACCAAAGACTGCATTTTTGCTCCTTACTTTCCTTCTGATGACCCCCACAAGTTTGTCATTGTTCACAAGGTCTTTGGTGCCAGCAATGTTAGCAAAATGTTGCAGGAGCTTCCGGCTCATCAGAGAGCAGATGCAGTGAGCAGTTTAGTTTATGAAGCAAATGCAAGAATGAGGGACCCAGTGTACGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

81

Amino Acids

8.9

Weight (kDa)

9.07

Isoelectric Point (pI)

61.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 6 - 80 1.6e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 43
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 236
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 37
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 226
AvaII GGWCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 3 cut(s) 130, 227, 228
BmrI ACTGGG 1 cut(s) 224
BmsI GCATC 2 cut(s) 38, 172
BmuI ACTGGG 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 1 cut(s) 142
BseNI ACTGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 128
BsiSI CCGG 2 cut(s) 6, 164
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 5
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 3 cut(s) 130, 227, 228
BspT107I GGYRCC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 142
BsrI ACTGG 1 cut(s) 230
BssNI GRCGYC 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 133
BstHHI GCGC 1 cut(s) 23
BstMWI GCNNNNNNNGC 2 cut(s) 27, 141
BstV1I GCAGC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 192, 237
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 226
CseI GACGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 235
CviJI RGCY 3 cut(s) 5, 160, 167
CviKI_1 RGCY 3 cut(s) 5, 160, 167
CviQI GTAC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 226
FaiI YATR 1 cut(s) 204
FaqI GGGAC 1 cut(s) 239
Fnu4HI GCNGC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 38
GlaI GCGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 6, 164
HgaI GACGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 43
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HpaII CCGG 2 cut(s) 6, 164
Hpy166II GTNNAC 2 cut(s) 115, 235
Hpy188I TCNGA 2 cut(s) 88, 174
Hpy8I GTNNAC 2 cut(s) 115, 235
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 93
HpyCH4V TGCA 6 cut(s) 30, 51, 63, 154, 185, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 141
Hsp92I GRCGYC 1 cut(s) 43
HspAI GCGC 1 cut(s) 21
KflI GGGWCCC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 76, 157
LpnPI CCDG 5 cut(s) 19, 40, 140, 145, 177
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 2 cut(s) 38, 172
MnlI CCTC 1 cut(s) 216
MspI CCGG 2 cut(s) 6, 164
MwoI GCNNNNNNNGC 2 cut(s) 27, 141
NlaIV GGNNCC 3 cut(s) 130, 227, 228
PkrI GCNGC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 226
PspN4I GGNNCC 3 cut(s) 130, 227, 228
PspPI GGNCC 1 cut(s) 226
PspPPI RGGWCCY 1 cut(s) 226
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SatI GCNGC 1 cut(s) 38
Sau96I GGNCC 1 cut(s) 226
SetI ASST 2 cut(s) 123, 162
SfaNI GCATC 2 cut(s) 38, 172
SinI GGWCC 1 cut(s) 226
TscAI CASTG 2 cut(s) 192, 237
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 219
TspRI CASTG 2 cut(s) 192, 237
VpaK11BI GGWCC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.