Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002494

Physical Location & Seq

Genomic Coordinates Reverse (-)

47611902 .. 47612534

Gene Structure 633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0360600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGAGAAACAACAACAACATGAAGCATGATCATAATCGGTATTATGATCATGATGAATCTCCTCCTCCAGTTGCTGCTGCTACAGTCAGTGATGATAGCAAATATTCCGAGCTTTTGGAGCTGATGGTGAAATTTGGAAAGAAGGAGATGAAAGACGTCGAAGAAGAAACTGGACGAATGATCAGTTTAATAGATTGGCTAGACAAGTCTCACAAATTGGAGGGTCTGAGAGCAATGAGGGCTCGAGTAATTGACCAGCTTAAGAGTAGCGTCCCTCGTCATCTTCTTAGTTTCTGGTTTTTGATAACACTCATGTACTCAGAGGACAAACAAGTGATCGCTGCAAAATATCGACAATTCATGTCTTCACATATAGCTATAGATGATCTATGTGATCATGTGGAGAATTACTCGGAACTGATGGACTTAGCAGGCACAGAGCTCAAGAAGATAAAAGAGCAATATCCCAATCAAGTTGGAATCATGGCTACCGCGTCGGAGCTGCAGAGTACTACTGAGCTATTCCTGAGTTTTAACAGAGGATTGAAGAGTTTACTGTTTAAGATCAAATTGATGGAATTGCATCTGTTGTATCCGTGTCGACCGGAACGTACTGCAGAAGTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

210

Amino Acids

24.4

Weight (kDa)

5.92

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30130
fragaria_vesca	FvH4_3g39540 FvH4_7g25110
malus_domestica	MD01G1157900.v1.1 MD03G1060100.v1.1 MD07G1226600.v1.1 MD11G1063200.v1.1
prunus_persica	Prupe.2G256200_v2.0.a1 Prupe.6G050400_v2.0.a1
pyrus_communis	pycom07g20510 pycom11g05290
rosa_chinensis	RchiOBHm_Chr1g0370961 RchiOBHm_Chr1g0370991 RchiOBHm_Chr5g0071311
rosa_laevigata	RLG00000026992 RLG00000026995 RLG00000036201
rosa_multiflora	Rmu_co8489701.1_g000001 Rmu_sc0001018.1_g000013 Rmu_sc0001018.1_g000019 Rmu_sc0006990.1_g000009
rosa_roxburghii	Rroxscaffold_1G00009830 Rroxscaffold_4G00286050 Rroxscaffold_4G00286080
rosa_rugosa	Rorug01G0360300 Rorug01G0360600 Rorug05G0411200
rosa_samantha	Rh1AG370700 Rh1BG334300 Rh1BG334500 Rh1CG347600 Rh1CG347800 Rh1DG365500 Rh1DG365700 Rh5AG467600 Rh5BG486100 Rh5CG510500 Rh5DG497300
rosa_wichuraiana	Rw1G032620 Rw1G032640 Rw5G043440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
AccI	GTMKAC	1 cut(s)	604
AccII	CGCG	1 cut(s)	497
AciI	CCGC	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	3 cut(s)	320, 514, 616
AflII	CTTAAG	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	550
AluBI	AGCT	7 cut(s)	115, 124, 262, 380, 445, 505, 523
AluI	AGCT	7 cut(s)	115, 124, 262, 380, 445, 505, 523
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	216
AlwNI	CAGNNNCTG	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	246
ApeKI	GCWGC	4 cut(s)	77, 80, 344, 505
ApoI	RAATTY	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	246
BanII	GRGCYC	2 cut(s)	247, 447
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	4 cut(s)	64, 67, 331, 492
BccI	CCATC	3 cut(s)	121, 418, 571
BciVI	GTATCC	1 cut(s)	606
BclI	TGATCA	4 cut(s)	31, 49, 183, 397
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	4 cut(s)	84, 381, 506, 618
BfrI	CTTAAG	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	606
BisI	GCNGC	4 cut(s)	78, 81, 345, 506
BlsI	GCNGC	4 cut(s)	79, 82, 346, 507
BmcAI	AGTACT	1 cut(s)	514
BmeT110I	CYCGRG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	595
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BpmI	CTGGAG	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	431
BsaBI	GATNNNNATC	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	607
Bse1I	ACTGG	2 cut(s)	71, 178
Bse3DI	GCAATG	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	36
BseJI	GATNNNNATC	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	4 cut(s)	221, 336, 510, 521
BseNI	ACTGG	2 cut(s)	71, 178
BseRI	GAGGAG	2 cut(s)	54, 57
BseXI	GCAGC	4 cut(s)	64, 67, 331, 492
Bsh1236I	CGCG	1 cut(s)	497
Bsh1285I	CGRYCG	1 cut(s)	608
BsiEI	CGRYCG	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	247, 447
Bsp143I	GATC	7 cut(s)	31, 49, 183, 339, 388, 397, 567
BspACI	CCGC	1 cut(s)	495
BspCNI	CTCAG	4 cut(s)	222, 335, 511, 522
BspFNI	CGCG	1 cut(s)	497
BspHI	TCATGA	1 cut(s)	52
BspMAI	CTGCAG	2 cut(s)	510, 622
BspTI	CTTAAG	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	2 cut(s)	71, 178
BssMI	GATC	7 cut(s)	31, 49, 183, 339, 388, 397, 567
BssNI	GRCGYC	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	88, 561
Bst6I	CTCTTC	1 cut(s)	545
BstACI	GRCGYC	1 cut(s)	159
BstAFI	CTTAAG	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	6 cut(s)	230, 290, 322, 430, 519, 530
BstFNI	CGCG	1 cut(s)	497
BstKTI	GATC	7 cut(s)	34, 52, 186, 342, 391, 400, 570
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	7 cut(s)	31, 49, 183, 339, 388, 397, 567
BstMCI	CGRYCG	1 cut(s)	608
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 242
BstSFI	CTRYAG	4 cut(s)	84, 381, 506, 618
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	4 cut(s)	64, 67, 331, 492
BstV2I	GAAGAC	1 cut(s)	360
BsuI	GTATCC	1 cut(s)	606
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	436
CaiI	CAGNNNCTG	1 cut(s)	77
CciI	TCATGA	1 cut(s)	52
CseI	GACGC	2 cut(s)	262, 486
Csp6I	GTAC	3 cut(s)	319, 513, 615
CviAII	CATG	7 cut(s)	22, 29, 53, 316, 364, 401, 487
CviQI	GTAC	3 cut(s)	319, 513, 615
DdeI	CTNAG	6 cut(s)	230, 290, 322, 430, 519, 530
DpnI	GATC	7 cut(s)	33, 51, 185, 341, 390, 399, 569
DpnII	GATC	7 cut(s)	31, 49, 183, 339, 388, 397, 567
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Ecl136II	GAGCTC	1 cut(s)	445
Eco24I	GRGCYC	2 cut(s)	247, 447
Eco53kI	GAGCTC	1 cut(s)	445
Eco88I	CYCGRG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	445
EcoT38I	GRGCYC	2 cut(s)	247, 447
FaeI	CATG	7 cut(s)	25, 32, 56, 319, 367, 404, 490
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	7 cut(s)	21, 28, 52, 315, 363, 400, 486
FbaI	TGATCA	4 cut(s)	31, 49, 183, 397
FblI	GTMKAC	1 cut(s)	604
Fnu4HI	GCNGC	4 cut(s)	78, 81, 345, 506
FriOI	GRGCYC	2 cut(s)	247, 447
Fsp4HI	GCNGC	4 cut(s)	78, 81, 345, 506
FspBI	CTAG	1 cut(s)	203
GluI	GCNGC	4 cut(s)	78, 81, 345, 506
GsuI	CTGGAG	1 cut(s)	54
HapII	CCGG	1 cut(s)	608
HgaI	GACGC	2 cut(s)	262, 486
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	7 cut(s)	25, 32, 56, 319, 367, 404, 490
HincII	GTYRAC	1 cut(s)	605
HindII	GTYRAC	1 cut(s)	605
HinfI	GANTC	2 cut(s)	59, 483
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	557, 605
Hpy188I	TCNGA	5 cut(s)	112, 231, 325, 418, 502
Hpy188III	TCNNGA	3 cut(s)	53, 448, 529
Hpy8I	GTNNAC	2 cut(s)	557, 605
Hpy99I	CGWCG	2 cut(s)	164, 502
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	88, 561
HpyCH4IV	ACGT	2 cut(s)	159, 613
HpyCH4V	TGCA	4 cut(s)	347, 508, 586, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 242
HpyF3I	CTNAG	6 cut(s)	230, 290, 322, 430, 519, 530
HpySE526I	ACGT	2 cut(s)	159, 613
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	7 cut(s)	25, 32, 56, 319, 367, 404, 490
Ksp22I	TGATCA	4 cut(s)	31, 49, 183, 397
Kzo9I	GATC	7 cut(s)	31, 49, 183, 339, 388, 397, 567
LmnI	GCTCC	2 cut(s)	121, 502
LpnPI	CCDG	7 cut(s)	84, 159, 272, 283, 420, 542, 621
Lsp1109I	GCAGC	4 cut(s)	64, 67, 331, 492
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	2 cut(s)	159, 613
MalI	GATC	7 cut(s)	33, 51, 185, 341, 390, 399, 569
MboI	GATC	7 cut(s)	31, 49, 183, 339, 388, 397, 567
MboII	GAAGA	6 cut(s)	176, 179, 278, 360, 463, 562
MhlI	GDGCHC	2 cut(s)	247, 447
MluCI	AATT	7 cut(s)	134, 218, 252, 359, 409, 572, 581
MmeI	TCCRAC	2 cut(s)	460, 480
MnlI	CCTC	7 cut(s)	75, 78, 217, 234, 288, 319, 536
MseI	TTAA	4 cut(s)	191, 264, 537, 564
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	1 cut(s)	608
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	2 cut(s)	121, 242
NdeII	GATC	7 cut(s)	31, 49, 183, 339, 388, 397, 567
NlaIII	CATG	7 cut(s)	25, 32, 56, 319, 367, 404, 490
PaeR7I	CTCGAG	1 cut(s)	246
PagI	TCATGA	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	59, 483
PkrI	GCNGC	4 cut(s)	79, 82, 346, 507
Psp124BI	GAGCTC	1 cut(s)	447
PspXI	VCTCGAGB	1 cut(s)	246
PstI	CTGCAG	2 cut(s)	510, 622
PstNI	CAGNNNCTG	1 cut(s)	77
RsaI	GTAC	3 cut(s)	320, 514, 616
RsaNI	GTAC	3 cut(s)	319, 513, 615
SacI	GAGCTC	1 cut(s)	447
SalI	GTCGAC	1 cut(s)	603
SaqAI	TTAA	4 cut(s)	191, 264, 537, 564
SatI	GCNGC	4 cut(s)	78, 81, 345, 506
Sau3AI	GATC	7 cut(s)	31, 49, 183, 339, 388, 397, 567
ScaI	AGTACT	1 cut(s)	514
SduI	GDGCHC	2 cut(s)	247, 447
SetI	ASST	9 cut(s)	117, 126, 162, 264, 382, 447, 507, 525, 616
SfaNI	GCATC	1 cut(s)	595
SfcI	CTRYAG	4 cut(s)	84, 381, 506, 618
Sfr274I	CTCGAG	1 cut(s)	246
SlaI	CTCGAG	1 cut(s)	246
SmlI	CTYRAG	3 cut(s)	246, 263, 446
SmoI	CTYRAG	3 cut(s)	246, 263, 446
Sse9I	AATT	7 cut(s)	134, 218, 252, 359, 409, 572, 581
SsiI	CCGC	1 cut(s)	495
SspI	AATATT	1 cut(s)	107
SspMI	CTAG	1 cut(s)	203
SstI	GAGCTC	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	88, 561
TaiI	ACGT	2 cut(s)	162, 616
TaqI	TCGA	4 cut(s)	162, 247, 355, 604
TasI	AATT	7 cut(s)	134, 218, 252, 359, 409, 572, 581
TatI	WGTACW	2 cut(s)	318, 512
TfiI	GAWTC	2 cut(s)	59, 483
Tru1I	TTAA	4 cut(s)	191, 264, 537, 564
Tru9I	TTAA	4 cut(s)	191, 264, 537, 564
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	4 cut(s)	77, 80, 344, 505
TspDTI	ATGAA	4 cut(s)	38, 72, 167, 352
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	1 cut(s)	97
Vha464I	CTTAAG	1 cut(s)	263
XapI	RAATTY	1 cut(s)	134
XhoI	CTCGAG	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	604
XspI	CTAG	1 cut(s)	203
ZraI	GACGTC	1 cut(s)	160
ZrmI	AGTACT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.