Rw1G032620

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002494
Physical Location & Seq
Forward (+)
60821927 .. 60822582
656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G032620.1

Sequence Viewer

Length: 516 bp
ATGGGCGGAAATGGAACTTCACCGTGCGCCTCTTGCAAGTTGCTGAGACGCCGATGCGCACAAGACTGCATTTTTGCCCCTTACTTTCCCTCCGATGACCCCCACAAGTTCGCCATCGTGCACAAAGTCTTCGGTGCTAGCAATGTTAGCAAGATGTTGCAGGAGCTTCCAGTTCACCAGAGAACAGATGCAGTGAGCAGTCTAGTGTATGAAGCCAATGCAAGAGTGAGAGACCCAGTTTATGGGTGTGTTGGGGCCATTTCTTGCTTGCAAAACCAAGTCTCCGAGCTGCAAATGCAACTTGCTGTGGCTCAGGCCGAGATCCTCTGCATTCAGATGCAGCAAGAGCCTATGGTACTCCCTTCCCAGCAGATGGACACATGCACAGACGATGAGAGGACATATTTCCTCAACAACAATCTCCCTCAGTACCTGGACTTTCCCTCTTCTAGTTCTAGCAATATCCATGACTCTCTCAAGAGGGAGGGCATCTTTGGACATGACATGGTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

171

Amino Acids

18.99

Weight (kDa)

5.43

Isoelectric Point (pI)

62.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 8 - 105 8.8e-43 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 58
AccB7I CCANNNNNTGG 2 cut(s) 242, 373
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 49
AfaI GTAC 2 cut(s) 357, 431
AfiI CCNNNNNNNGG 2 cut(s) 242, 373
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 2 cut(s) 166, 289
AluI AGCT 2 cut(s) 166, 289
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 3 cut(s) 40, 225, 286
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 1 cut(s) 316
AlwNI CAGNNNCTG 1 cut(s) 433
AoxI GGCC 2 cut(s) 255, 315
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 289, 340
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspLEI GCGC 2 cut(s) 29, 59
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 2 cut(s) 12, 167
AsuNHI GCTAGC 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 276, 352
BccI CCATC 2 cut(s) 122, 367
BciT130I CCWGG 1 cut(s) 434
BcoDI GTCTC 3 cut(s) 40, 225, 286
BfaI CTAG 4 cut(s) 138, 203, 450, 456
BisI GCNGC 2 cut(s) 290, 341
BlsI GCNGC 2 cut(s) 291, 342
Bme1390I CCNGG 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 434
BmrI ACTGGG 1 cut(s) 230
BmsI GCATC 4 cut(s) 44, 178, 327, 498
BmtI GCTAGC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 230
BpiI GAAGAC 1 cut(s) 121
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 461
BsaHI GRCGYC 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 225
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 266, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 373
Bse1I ACTGG 2 cut(s) 170, 236
Bse3DI GCAATG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 434
BseLI CCNNNNNNNGG 2 cut(s) 242, 373
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 3 cut(s) 35, 326, 440
BseNI ACTGG 2 cut(s) 170, 236
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 2 cut(s) 276, 352
BseYI CCCAGC 1 cut(s) 366
BshFI GGCC 2 cut(s) 257, 317
BsiHKAI GWGCWC 1 cut(s) 123
BslI CCNNNNNNNGG 2 cut(s) 242, 373
BsmAI GTCTC 3 cut(s) 40, 225, 286
BsmBI CGTCTC 1 cut(s) 40
BsmI GAATGC 1 cut(s) 330
BsnI GGCC 2 cut(s) 257, 317
Bso31I GGTCTC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 321
BspACI CCGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 257, 317
BspCNI CTCAG 3 cut(s) 36, 325, 439
BspLI GGNNCC 1 cut(s) 256
BspOI GCTAGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 2 cut(s) 170, 236
BssMI GATC 1 cut(s) 321
BssNI GRCGYC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 434
Bst4CI ACNGT 1 cut(s) 24
Bst6I CTCTTC 1 cut(s) 451
BstACI GRCGYC 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 139, 269
BstDEI CTNAG 3 cut(s) 44, 312, 426
BstHHI GCGC 2 cut(s) 29, 59
BstKTI GATC 1 cut(s) 324
BstMAI GTCTC 3 cut(s) 40, 225, 286
BstMBI GATC 1 cut(s) 321
BstMWI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
BstNI CCWGG 1 cut(s) 434
BstNSI RCATGY 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 432
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 276, 352
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BsuRI GGCC 2 cut(s) 257, 317
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 2 cut(s) 139, 269
CaiI CAGNNNCTG 1 cut(s) 433
CfoI GCGC 2 cut(s) 29, 59
Cfr13I GGNCC 1 cut(s) 255
CseI GACGC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 356, 430
CviAII CATG 4 cut(s) 381, 467, 500, 505
CviJI RGCY 7 cut(s) 166, 215, 257, 289, 311, 317, 349
CviKI_1 RGCY 7 cut(s) 166, 215, 257, 289, 311, 317, 349
CviQI GTAC 2 cut(s) 356, 430
DdeI CTNAG 3 cut(s) 44, 312, 426
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 451
EciI GGCGGA 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 40
FaeI CATG 4 cut(s) 384, 470, 503, 508
FaiI YATR 8 cut(s) 210, 243, 353, 382, 403, 468, 501, 506
FatI CATG 4 cut(s) 380, 466, 499, 504
Fnu4HI GCNGC 2 cut(s) 290, 341
Fsp4HI GCNGC 2 cut(s) 290, 341
FspAI RTGCGCAY 1 cut(s) 58
FspBI CTAG 4 cut(s) 138, 203, 450, 456
FspI TGCGCA 1 cut(s) 58
GlaI GCGC 2 cut(s) 28, 58
GluI GCNGC 2 cut(s) 290, 341
GsaI CCCAGC 1 cut(s) 370
HaeIII GGCC 2 cut(s) 257, 317
HgaI GACGC 1 cut(s) 57
HhaI GCGC 2 cut(s) 29, 59
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 4 cut(s) 384, 470, 503, 508
Hin6I GCGC 2 cut(s) 27, 57
HinP1I GCGC 2 cut(s) 27, 57
HinfI GANTC 1 cut(s) 470
HphI GGTGA 2 cut(s) 12, 167
Hpy166II GTNNAC 2 cut(s) 121, 175
Hpy188I TCNGA 3 cut(s) 94, 286, 336
Hpy188III TCNNGA 1 cut(s) 478
Hpy8I GTNNAC 2 cut(s) 121, 175
HpyAV CCTTC 1 cut(s) 372
HpyCH4III ACNGT 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
HpyF3I CTNAG 3 cut(s) 44, 312, 426
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 4 cut(s) 384, 470, 503, 508
HspAI GCGC 2 cut(s) 27, 57
Kzo9I GATC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 8 cut(s) 146, 183, 191, 249, 299, 380, 419, 446
Lsp1109I GCAGC 2 cut(s) 276, 352
LweI GCATC 4 cut(s) 44, 178, 327, 498
MaeI CTAG 4 cut(s) 138, 203, 450, 456
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MboII GAAGA 2 cut(s) 121, 438
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 1 cut(s) 123
MlyI GAGTC 1 cut(s) 464
MnlI CCTC 9 cut(s) 40, 100, 335, 390, 419, 435, 454, 474, 478
MseI TTAA 1 cut(s) 514
MslI CAYNNNNRTG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 434
Mva1269I GAATGC 1 cut(s) 330
MvaI CCWGG 1 cut(s) 434
MwoI GCNNNNNNNGC 4 cut(s) 33, 147, 295, 346
NdeII GATC 1 cut(s) 321
NheI GCTAGC 1 cut(s) 137
NlaIII CATG 4 cut(s) 384, 470, 503, 508
NlaIV GGNNCC 1 cut(s) 256
NmeAIII GCCGAG 1 cut(s) 343
NsbI TGCGCA 1 cut(s) 58
NspI RCATGY 1 cut(s) 384
PctI GAATGC 1 cut(s) 330
PflFI GACNNNGTC 1 cut(s) 506
PflMI CCANNNNNTGG 2 cut(s) 242, 373
PkrI GCNGC 2 cut(s) 291, 342
PleI GAGTC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 464
Psp6I CCWGG 1 cut(s) 432
PspFI CCCAGC 1 cut(s) 366
PspGI CCWGG 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 321
PsyI GACNNNGTC 1 cut(s) 506
RsaI GTAC 2 cut(s) 357, 431
RsaNI GTAC 2 cut(s) 356, 430
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 1 cut(s) 514
SatI GCNGC 2 cut(s) 290, 341
Sau3AI GATC 1 cut(s) 321
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 1 cut(s) 434
SduI GDGCHC 1 cut(s) 123
SetI ASST 3 cut(s) 168, 291, 435
SfaNI GCATC 4 cut(s) 44, 178, 327, 498
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SsiI CCGC 1 cut(s) 6
SspMI CTAG 4 cut(s) 138, 203, 450, 456
StyD4I CCNGG 1 cut(s) 432
TaaI ACNGT 1 cut(s) 24
Tru1I TTAA 1 cut(s) 514
Tru9I TTAA 1 cut(s) 514
TscAI CASTG 1 cut(s) 198
TseI GCWGC 2 cut(s) 289, 340
TspDTI ATGAA 1 cut(s) 225
TspRI CASTG 1 cut(s) 198
Tth111I GACNNNGTC 1 cut(s) 506
Van91I CCANNNNNTGG 2 cut(s) 242, 373
VneI GTGCAC 1 cut(s) 119
XceI RCATGY 1 cut(s) 384
XspI CTAG 4 cut(s) 138, 203, 450, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.