Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002494

Physical Location & Seq

Genomic Coordinates Reverse (-)

3550586 .. 3551713

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G050400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGGGGGAACTTCTCCATGTGCTTCTTGCAAGTTGTTGAGGCGCCGCTGCGCCAAGGACTGCATCTTTGCCCCTTACTTCCCTTCTGATGACCCTCATAAGTTTGCCCTTGTTCACAAGGTCTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTTCCGATTCATCAAAGGGGAGATGCTGTGAGCAGTTTGGTTTATGAAGCAAATGCAAGAGTGAGAGACCCGGTTTATGGCTGCGTAGGGGCAATATCTTTCCTGCAGAACCAAGTTTCTCAGCTACAAATGCAGCTTGCTGTGGCTCAGGCAGAGATACTCTGCATCCAGATGCAGCAGGAGCCTGTAGCCTTACCCAACCAGATAGATCATCAACATAATCATCATCATCAAGATCATGATCATGATCAGAAGTCCCTTCTTTTATCCAACAGTGACTTCAATAACATTCCACATCAATACTTCAGCAGCTTTGCTTCTTCTAGCAATGTAATCCAAGACCCTCTTAAAAGAGAGTCTCTCTGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

177

Amino Acids

19.78

Weight (kDa)

6.57

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30130
fragaria_vesca	FvH4_3g39540 FvH4_7g25110
malus_domestica	MD01G1157900.v1.1 MD03G1060100.v1.1 MD07G1226600.v1.1 MD11G1063200.v1.1
prunus_persica	Prupe.2G256200_v2.0.a1 Prupe.6G050400_v2.0.a1
pyrus_communis	pycom07g20510 pycom11g05290
rosa_chinensis	RchiOBHm_Chr1g0370961 RchiOBHm_Chr1g0370991 RchiOBHm_Chr5g0071311
rosa_laevigata	RLG00000026992 RLG00000026995 RLG00000036201
rosa_multiflora	Rmu_co8489701.1_g000001 Rmu_sc0001018.1_g000013 Rmu_sc0001018.1_g000019 Rmu_sc0006990.1_g000009
rosa_roxburghii	Rroxscaffold_1G00009830 Rroxscaffold_4G00286050 Rroxscaffold_4G00286080
rosa_rugosa	Rorug01G0360300 Rorug01G0360600 Rorug05G0411200
rosa_samantha	Rh1AG370700 Rh1BG334300 Rh1BG334500 Rh1CG347600 Rh1CG347800 Rh1DG365500 Rh1DG365700 Rh5AG467600 Rh5BG486100 Rh5CG510500 Rh5DG497300
rosa_wichuraiana	Rw1G032620 Rw1G032640 Rw5G043440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	42
AciI	CCGC	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	448
AcyI	GRCGYC	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	442
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	4 cut(s)	160, 283, 295, 471
AluI	AGCT	4 cut(s)	160, 283, 295, 471
Alw26I	GTCTC	2 cut(s)	219, 522
ApeKI	GCWGC	5 cut(s)	48, 240, 292, 334, 468
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
AspLEI	GCGC	2 cut(s)	45, 53
AsuC2I	CCSGG	1 cut(s)	230
AsuNHI	GCTAGC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	42
BbvI	GCAGC	5 cut(s)	35, 227, 304, 346, 480
BclI	TGATCA	2 cut(s)	400, 406
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	2 cut(s)	219, 522
BfaI	CTAG	2 cut(s)	132, 483
BfmI	CTRYAG	2 cut(s)	263, 345
BfoI	RGCGCY	1 cut(s)	46
BisI	GCNGC	6 cut(s)	46, 49, 241, 293, 335, 469
BlsI	GCNGC	6 cut(s)	47, 50, 242, 294, 336, 470
Bme1390I	CCNGG	1 cut(s)	230
BmiI	GGNNCC	2 cut(s)	44, 342
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	4 cut(s)	72, 172, 321, 333
BmtI	GCTAGC	1 cut(s)	135
BplI	GAGNNNNNCTC	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	306
BpuMI	CCSGG	1 cut(s)	230
BsaBI	GATNNNNATC	2 cut(s)	399, 405
BsaHI	GRCGYC	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse3DI	GCAATG	2 cut(s)	142, 493
Bse8I	GATNNNNATC	2 cut(s)	399, 405
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	324
BseJI	GATNNNNATC	2 cut(s)	399, 405
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	2 cut(s)	142, 493
BseMII	CTCAG	2 cut(s)	293, 320
BseXI	GCAGC	5 cut(s)	35, 227, 304, 346, 480
BshNI	GGYRCC	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	219, 522
BsmFI	GGGAC	1 cut(s)	400
Bso31I	GGTCTC	1 cut(s)	219
Bsp143I	GATC	4 cut(s)	367, 394, 400, 406
BspACI	CCGC	1 cut(s)	46
BspCNI	CTCAG	2 cut(s)	292, 319
BspHI	TCATGA	2 cut(s)	397, 403
BspLI	GGNNCC	2 cut(s)	44, 342
BspMAI	CTGCAG	1 cut(s)	267
BspOI	GCTAGC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	219
BsrDI	GCAATG	2 cut(s)	142, 493
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	4 cut(s)	367, 394, 400, 406
BssNI	GRCGYC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	434
BstACI	GRCGYC	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	133, 297
BstDEI	CTNAG	2 cut(s)	279, 306
BstF5I	GGATG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	2 cut(s)	45, 53
BstKTI	GATC	4 cut(s)	370, 397, 403, 409
BstMAI	GTCTC	2 cut(s)	219, 522
BstMBI	GATC	4 cut(s)	367, 394, 400, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 289, 340
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	2 cut(s)	263, 345
BstV1I	GCAGC	5 cut(s)	35, 227, 304, 346, 480
BtsCI	GGATG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	439
Cac8I	GCNNGC	2 cut(s)	133, 297
CciI	TCATGA	2 cut(s)	397, 403
CfoI	GCGC	2 cut(s)	45, 53
CviAII	CATG	3 cut(s)	18, 398, 404
CviJI	RGCY	8 cut(s)	160, 240, 283, 295, 305, 343, 350, 471
CviKI_1	RGCY	8 cut(s)	160, 240, 283, 295, 305, 343, 350, 471
DdeI	CTNAG	2 cut(s)	279, 306
DinI	GGCGCC	1 cut(s)	44
DpnI	GATC	4 cut(s)	369, 396, 402, 408
DpnII	GATC	4 cut(s)	367, 394, 400, 406
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	54
EgeI	GGCGCC	1 cut(s)	44
EheI	GGCGCC	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	3 cut(s)	21, 401, 407
FaiI	YATR	7 cut(s)	19, 99, 204, 237, 378, 399, 405
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	3 cut(s)	17, 397, 403
FbaI	TGATCA	2 cut(s)	400, 406
Fnu4HI	GCNGC	6 cut(s)	46, 49, 241, 293, 335, 469
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	6 cut(s)	46, 49, 241, 293, 335, 469
FspBI	CTAG	2 cut(s)	132, 483
GlaI	GCGC	2 cut(s)	44, 52
GluI	GCNGC	6 cut(s)	46, 49, 241, 293, 335, 469
HaeII	RGCGCY	1 cut(s)	46
HapII	CCGG	1 cut(s)	230
HhaI	GCGC	2 cut(s)	45, 53
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	3 cut(s)	21, 401, 407
Hin6I	GCGC	2 cut(s)	43, 51
HinP1I	GCGC	2 cut(s)	43, 51
HinfI	GANTC	2 cut(s)	166, 515
HpaII	CCGG	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	3 cut(s)	88, 165, 411
Hpy188III	TCNNGA	5 cut(s)	328, 392, 398, 404, 523
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	2 cut(s)	93, 428
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	8 cut(s)	30, 63, 154, 215, 265, 292, 324, 334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 289, 340
HpyF3I	CTNAG	2 cut(s)	279, 306
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	3 cut(s)	21, 401, 407
HspAI	GCGC	2 cut(s)	43, 51
KasI	GGCGCC	1 cut(s)	42
Ksp22I	TGATCA	2 cut(s)	400, 406
Kzo9I	GATC	4 cut(s)	367, 394, 400, 406
LmnI	GCTCC	2 cut(s)	157, 340
LpnPI	CCDG	9 cut(s)	140, 243, 275, 293, 323, 341, 357, 374, 508
Lsp1109I	GCAGC	5 cut(s)	35, 227, 304, 346, 480
LweI	GCATC	4 cut(s)	72, 172, 321, 333
MaeI	CTAG	2 cut(s)	132, 483
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	4 cut(s)	369, 396, 402, 408
MboI	GATC	4 cut(s)	367, 394, 400, 406
MboII	GAAGA	1 cut(s)	471
Mly113I	GGCGCC	1 cut(s)	43
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	453
MnlI	CCTC	3 cut(s)	33, 105, 513
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	2 cut(s)	329, 402
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	141, 289, 340
NarI	GGCGCC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	4 cut(s)	367, 394, 400, 406
NheI	GCTAGC	1 cut(s)	131
NlaIII	CATG	3 cut(s)	21, 401, 407
NlaIV	GGNNCC	2 cut(s)	44, 342
NmuCI	GTSAC	1 cut(s)	434
PagI	TCATGA	2 cut(s)	397, 403
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	6 cut(s)	47, 50, 242, 294, 336, 470
PleI	GAGTC	1 cut(s)	523
PluTI	GGCGCC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	44, 342
PstI	CTGCAG	1 cut(s)	267
RseI	CAYNNNNRTG	2 cut(s)	329, 402
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	6 cut(s)	46, 49, 241, 293, 335, 469
Sau3AI	GATC	4 cut(s)	367, 394, 400, 406
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	5 cut(s)	123, 162, 285, 297, 473
SfaNI	GCATC	4 cut(s)	72, 172, 321, 333
SfcI	CTRYAG	2 cut(s)	263, 345
SfoI	GGCGCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	2 cut(s)	329, 402
SsiI	CCGC	1 cut(s)	46
SspDI	GGCGCC	1 cut(s)	42
SspMI	CTAG	2 cut(s)	132, 483
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	434
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	5 cut(s)	48, 240, 292, 334, 468
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	2 cut(s)	158, 219
TspRI	CASTG	1 cut(s)	439
XspI	CTAG	2 cut(s)	132, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.