AT2G30410

Belongs to the TBCA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003164
Physical Location & Seq
Forward (+)
12958116 .. 12960768
2653 bp
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UTR
Exon/CDS
Intron
AT2G30410.2

Sequence Viewer

Length: 342 bp
ATGGCAACGATAAGGAACTTGAAGATAAAAACATCAACATGTAAAAGGATTGTGAAAGAGCTTCACTCTTATGAGAAAGAAGTTGAGAGAGAAGCGGCTAAGACTGCTGATATGAAGGACAAAGGTGCTGATCCCTACGACCTTAAACAACAGGAAAATGTGTTGGGTGAGTCTAGGATGATGATTCCGGATTGCCACAAACGTCTCGAGTCTGCATTGGCTGACCTCAAGTCCACTTTGGCGGAATTGGAAGAGACGGATGAGAAGGAAGGTCCAGAGATCGAAGATGCAAAGAAGACAGTCGCGGATGTGGAGAAGCAGTTTCCCACTGAAGATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCA

Protein Analysis

113

Amino Acids

12.82

Weight (kDa)

4.96

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCA PF02970 3 - 100 2.8e-31 Tubulin binding cofactor A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 305
AccIII TCCGGA 1 cut(s) 187
AciI CCGC 3 cut(s) 95, 242, 305
AclWI GGATC 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 1 cut(s) 22
AhdI GACNNNNNGTC 1 cut(s) 229
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw26I GTCTC 2 cut(s) 209, 248
AlwI GGATC 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 206
AvaII GGWCC 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 302
BcoDI GTCTC 2 cut(s) 209, 248
BfaI CTAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 272
BmeRI GACNNNNNGTC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 272
BmsI GCATC 2 cut(s) 277, 325
BpiI GAAGAC 1 cut(s) 302
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpuEI CTTGAG 1 cut(s) 212
BsaWI WCCGGW 1 cut(s) 187
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
BseAI TCCGGA 1 cut(s) 187
BseGI GGATG 3 cut(s) 183, 265, 313
Bsh1236I CGCG 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 1 cut(s) 188
BsmAI GTCTC 2 cut(s) 209, 248
BsmBI CGTCTC 2 cut(s) 209, 248
BsoBI CYCGRG 1 cut(s) 206
Bsp13I TCCGGA 1 cut(s) 187
Bsp143I GATC 2 cut(s) 130, 279
BspACI CCGC 3 cut(s) 95, 242, 305
BspEI TCCGGA 1 cut(s) 187
BspFNI CGCG 1 cut(s) 305
BspPI GGATC 1 cut(s) 125
BssMI GATC 2 cut(s) 130, 279
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 99
BstF5I GGATG 3 cut(s) 183, 265, 313
BstFNI CGCG 1 cut(s) 305
BstKTI GATC 2 cut(s) 133, 282
BstMAI GTCTC 2 cut(s) 209, 248
BstMBI GATC 2 cut(s) 130, 279
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 42
BstUI CGCG 1 cut(s) 305
BstV2I GAAGAC 1 cut(s) 302
BtsCI GGATG 3 cut(s) 183, 265, 313
BtsIMutI CAGTG 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 272
CviAII CATG 1 cut(s) 39
CviJI RGCY 3 cut(s) 61, 98, 221
CviKI_1 RGCY 3 cut(s) 61, 98, 221
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 132, 281
DpnII GATC 2 cut(s) 130, 279
DriI GACNNNNNGTC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 246
Eam1105I GACNNNNNGTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 246
EciI GGCGGA 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 206
Esp3I CGTCTC 2 cut(s) 209, 248
FaeI CATG 1 cut(s) 42
FaiI YATR 3 cut(s) 40, 72, 113
FatI CATG 1 cut(s) 38
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 3 cut(s) 190, 272, 320
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 174
GluI GCNGC 1 cut(s) 96
HapII CCGG 1 cut(s) 188
Hin1II CATG 1 cut(s) 42
HinfI GANTC 3 cut(s) 170, 184, 209
HpaII CCGG 1 cut(s) 188
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 234
Hpy188III TCNNGA 3 cut(s) 188, 206, 275
Hpy8I GTNNAC 1 cut(s) 234
HpyAV CCTTC 3 cut(s) 109, 259, 263
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 215, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 202
Hsp92II CATG 1 cut(s) 42
Kpn2I TCCGGA 1 cut(s) 187
Kzo9I GATC 2 cut(s) 130, 279
LpnPI CCDG 3 cut(s) 137, 201, 288
LweI GCATC 2 cut(s) 277, 325
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 202
MalI GATC 2 cut(s) 132, 281
MboI GATC 2 cut(s) 130, 279
MboII GAAGA 4 cut(s) 34, 263, 296, 307
MluCI AATT 1 cut(s) 245
MlyI GAGTC 2 cut(s) 179, 218
MnlI CCTC 1 cut(s) 236
MroI TCCGGA 1 cut(s) 187
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 2 cut(s) 37, 69
MspI CCGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 2 cut(s) 130, 279
NlaIII CATG 1 cut(s) 42
NspI RCATGY 1 cut(s) 42
PaeR7I CTCGAG 1 cut(s) 206
PciI ACATGT 1 cut(s) 38
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 2 cut(s) 178, 217
PpsI GAGTC 2 cut(s) 178, 217
PscI ACATGT 1 cut(s) 38
PspPI GGNCC 1 cut(s) 272
RseI CAYNNNNRTG 2 cut(s) 37, 69
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 130, 279
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 2 cut(s) 179, 218
SetI ASST 6 cut(s) 63, 127, 144, 205, 228, 274
SfaNI GCATC 2 cut(s) 277, 325
Sfr274I CTCGAG 1 cut(s) 206
SinI GGWCC 1 cut(s) 272
SlaI CTCGAG 1 cut(s) 206
SmiMI CAYNNNNRTG 2 cut(s) 37, 69
SmlI CTYRAG 2 cut(s) 206, 227
SmoI CTYRAG 2 cut(s) 206, 227
Sse9I AATT 1 cut(s) 245
SsiI CCGC 3 cut(s) 95, 242, 305
SspMI CTAG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 1 cut(s) 205
TaqI TCGA 2 cut(s) 207, 282
TasI AATT 1 cut(s) 245
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 272
XceI RCATGY 1 cut(s) 42
XhoI CTCGAG 1 cut(s) 206
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.