Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003164

Physical Location & Seq

Genomic Coordinates Forward (+)

16400650 .. 16402865

Gene Structure 2216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G105900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCATCCCTAAGAAATCTGAAAATCAAGACTGGTACTTGCAAACGCATTGTTAAGGAGCTTCATTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCAAAAACAGCAGACATGAAGGAGAAAGGAGCTGACCCTTATGACCTGAAGCAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGCTTCCCGATTGTCAGAAGCGCTTGGAGGCCTCACTAGCTGACCTTAAAGGAATTTTGGCTGAATTAGAAGAAGAGTTGAACCAGAAGGAAGGCCCCGAAATTGAAGAAGCTCGAACCATTATTGGAGAAGTTGATAAGTTATTTCAGACAACAGAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCA

Protein Analysis

115

Amino Acids

12.95

Weight (kDa)

4.97

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30410 AT2G30410 AT2G30410
fragaria_vesca	FvH4_7g07840 FvH4_7g08250 FvH4_7g08250
malus_domestica	MD02G1232800.v1.1 MD07G1080900.v1.1
prunus_persica	Prupe.2G105900_v2.0.a1
pyrus_communis	pycom02g20090 pycom07g06430
rosa_chinensis	RchiOBHm_Chr1g0341631 RchiOBHm_Chr1g0341741 RchiOBHm_Chr1g0341961 RchiOBHm_Chr1g0342531 RchiOBHm_Chr3g0457191 RchiOBHm_Chr4g0446751
rosa_laevigata	RLG00000029106
rosa_multiflora	Rmu_sc0000488.1_g000017 Rmu_sc0001400.1_g000027 Rmu_sc0005331.1_g000001 Rmu_sc0007075.1_g000018
rosa_roxburghii	Rroxscaffold_4G00312280 Rroxscaffold_4G00312330
rosa_rugosa	Rorug01G0147400.1 Rorug01G0150200.1 Rorug01G0154700.1
rosa_samantha	Rh1AG170400 Rh1BG131700 Rh1BG138200 Rh1CG158600 Rh1DG170500 Rh6BG195800
rosa_wichuraiana	Rw0G017560 Rw1G013780 Rw1G014170 Rw3G006810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	234
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	37
AfeI	AGCGCT	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	262, 287
AluBI	AGCT	5 cut(s)	61, 95, 128, 221, 293
AluI	AGCT	5 cut(s)	61, 95, 128, 221, 293
Aor51HI	AGCGCT	1 cut(s)	203
AoxI	GGCC	2 cut(s)	210, 274
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	82
BfaI	CTAG	2 cut(s)	218, 343
BfoI	RGCGCY	1 cut(s)	205
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	277
BmsI	GCATC	2 cut(s)	14, 171
Bse1I	ACTGG	1 cut(s)	37
BseGI	GGATG	2 cut(s)	5, 183
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	82
BshFI	GGCC	2 cut(s)	212, 276
BsnI	GGCC	2 cut(s)	212, 276
BspANI	GGCC	2 cut(s)	212, 276
BspLI	GGNNCC	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	5, 183
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 218
BstV1I	GCAGC	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	212, 276
BtsCI	GGATG	2 cut(s)	5, 183
Cac8I	GCNNGC	1 cut(s)	165
CfoI	GCGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	1 cut(s)	112
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	212
Eco47III	AGCGCT	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	275
FaeI	CATG	1 cut(s)	115
FaiI	YATR	3 cut(s)	72, 113, 138
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	2 cut(s)	218, 343
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	212, 276
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	170
Hpy188I	TCNGA	3 cut(s)	21, 198, 330
Hpy188III	TCNNGA	2 cut(s)	28, 188
HpyAV	CCTTC	4 cut(s)	70, 109, 262, 266
HpyCH4V	TGCA	2 cut(s)	42, 98
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 218
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	1 cut(s)	202
LmnI	GCTCC	2 cut(s)	58, 125
LpnPI	CCDG	5 cut(s)	18, 137, 149, 155, 278
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	2 cut(s)	14, 171
MaeI	CTAG	2 cut(s)	218, 343
MboII	GAAGA	3 cut(s)	263, 266, 299
MluCI	AATT	3 cut(s)	234, 245, 282
MnlI	CCTC	3 cut(s)	73, 202, 223
MseI	TTAA	2 cut(s)	54, 228
MslI	CAYNNNNRTG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	104, 218
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	275
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	2 cut(s)	54, 228
SatI	GCNGC	1 cut(s)	96
Sau96I	GGNCC	1 cut(s)	275
SetI	ASST	8 cut(s)	63, 84, 97, 130, 144, 223, 228, 295
SfaNI	GCATC	2 cut(s)	14, 171
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	3 cut(s)	234, 245, 282
SseBI	AGGCCT	1 cut(s)	212
SspMI	CTAG	2 cut(s)	218, 343
StuI	AGGCCT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	295
TasI	AATT	3 cut(s)	234, 245, 282
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	54, 228
Tru9I	TTAA	2 cut(s)	54, 228
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	53, 128
XapI	RAATTY	1 cut(s)	234
XspI	CTAG	2 cut(s)	218, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.