Rw3G006810

Belongs to the TBCA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003164
Physical Location & Seq
Reverse (-)
6347320 .. 6348578
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G006810.1

Sequence Viewer

Length: 318 bp
ATGGCAACTGTAAGGAATTTGAAAATCAAGACTGGGACTTGTAAACGCCTCGTTAAGGAGTTTGATTCTTATGAGAAAGAGGTTGTGAGAGAGGCTGCGAAAACAGCAGACATGAAGGGGAAAGGAGCTGATCCTTATGACCTCAAGCAACAGCGCCTGGAGGCCTCACTAGCTGAGTTAAAAGGAACTTTGGCTGAGTTGGAAGAAGAGTTGAACCAAAGGAATGCCCTAAAATTGAAGAAGCTCAGACAAATAATTTGTAGGATTGTATTGACACTATTGATGGTGTTCATGTTCAAGCTCGGACAATGCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCA

Protein Analysis

105

Amino Acids

12.0

Weight (kDa)

9.48

Isoelectric Point (pI)

14.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCA PF02970 3 - 73 2.6e-15 Tubulin binding cofactor A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 4 cut(s) 22, 214, 238, 298
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 4 cut(s) 128, 173, 244, 301
AluI AGCT 4 cut(s) 128, 173, 244, 301
AlwI GGATC 1 cut(s) 125
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 16
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
AspLEI GCGC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 158
BfaI CTAG 1 cut(s) 170
BfoI RGCGCY 1 cut(s) 157
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 158
BmrI ACTGGG 1 cut(s) 42
BmuI ACTGGG 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 3 cut(s) 165, 186, 259
BseNI ACTGG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 1 cut(s) 164
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 3 cut(s) 166, 187, 258
BspPI GGATC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 37
BssMI GATC 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 201
BstDEI CTNAG 3 cut(s) 174, 195, 245
BstENI CCTNNNNNAGG 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 2 cut(s) 104, 170
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 164
CaiI CAGNNNCTG 1 cut(s) 157
CfoI GCGC 1 cut(s) 156
CviAII CATG 2 cut(s) 112, 292
CviJI RGCY 7 cut(s) 95, 128, 164, 173, 194, 244, 301
CviKI_1 RGCY 7 cut(s) 95, 128, 164, 173, 194, 244, 301
DdeI CTNAG 3 cut(s) 174, 195, 245
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco147I AGGCCT 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 115, 295
FaiI YATR 5 cut(s) 72, 113, 138, 293, 316
FaqI GGGAC 1 cut(s) 49
FatI CATG 2 cut(s) 111, 291
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 179
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 1 cut(s) 164
HhaI GCGC 1 cut(s) 156
Hin1II CATG 2 cut(s) 115, 295
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 248, 305
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 170
HpyF3I CTNAG 3 cut(s) 174, 195, 245
Hsp92II CATG 2 cut(s) 115, 295
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 3 cut(s) 18, 143, 170
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 170
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 215, 218, 250
MluCI AATT 3 cut(s) 16, 233, 255
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 6 cut(s) 59, 73, 85, 152, 154, 175
MseI TTAA 2 cut(s) 54, 179
MspR9I CCNGG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 229
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 104, 170
NdeII GATC 1 cut(s) 130
NlaIII CATG 2 cut(s) 115, 295
PceI AGGCCT 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PstNI CAGNNNCTG 1 cut(s) 157
SaqAI TTAA 2 cut(s) 54, 179
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 158
SetI ASST 6 cut(s) 84, 130, 144, 175, 246, 303
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 3 cut(s) 16, 233, 255
SseBI AGGCCT 1 cut(s) 164
SspMI CTAG 1 cut(s) 170
StuI AGGCCT 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 10
TasI AATT 3 cut(s) 16, 233, 255
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 2 cut(s) 54, 179
Tru9I TTAA 2 cut(s) 54, 179
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 128, 280
XagI CCTNNNNNAGG 1 cut(s) 53
XapI RAATTY 1 cut(s) 16
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.