Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007075.1

Orthogroup ID

OG0003164

Physical Location & Seq

Genomic Coordinates Forward (+)

79739 .. 82505

Gene Structure 2767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007075.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgatccccactcgactctcaggtgatatggcaactgtaaggaatctgaaaatcaagactggcacttgtaaacgcctcgttaaggagtttcattcttatgagaaagaggttgagagagaggctgcgaaaacagcagacatgaaggggaaaggagctgatccttatgacctcaagcaacaggaaaatgtgctggctgaatcaaggatgatgattcccgattgtcgaaagcgcctggaggcctcactagctgagttaaaaggaactttggctgagttggaagaagagttgaaccagaaggaaggccctgaaattgaagaagctcgtaccattattgcagaagttgataagttgttccagacaacagaagcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCA

Protein Analysis

123

Amino Acids

13.93

Weight (kDa)

5.22

Isoelectric Point (pI)

27.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30410 AT2G30410 AT2G30410
fragaria_vesca	FvH4_7g07840 FvH4_7g08250 FvH4_7g08250
malus_domestica	MD02G1232800.v1.1 MD07G1080900.v1.1
prunus_persica	Prupe.2G105900_v2.0.a1
pyrus_communis	pycom02g20090 pycom07g06430
rosa_chinensis	RchiOBHm_Chr1g0341631 RchiOBHm_Chr1g0341741 RchiOBHm_Chr1g0341961 RchiOBHm_Chr1g0342531 RchiOBHm_Chr3g0457191 RchiOBHm_Chr4g0446751
rosa_laevigata	RLG00000029106
rosa_multiflora	Rmu_sc0000488.1_g000017 Rmu_sc0001400.1_g000027 Rmu_sc0005331.1_g000001 Rmu_sc0007075.1_g000018
rosa_roxburghii	Rroxscaffold_4G00312280 Rroxscaffold_4G00312330
rosa_rugosa	Rorug01G0147400.1 Rorug01G0150200.1 Rorug01G0154700.1
rosa_samantha	Rh1AG170400 Rh1BG131700 Rh1BG138200 Rh1CG158600 Rh1DG170500 Rh6BG195800
rosa_wichuraiana	Rw0G017560 Rw1G013780 Rw1G014170 Rw3G006810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	152
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	289, 314
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	3 cut(s)	155, 248, 320
AluI	AGCT	3 cut(s)	155, 248, 320
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	2 cut(s)	237, 301
ApeKI	GCWGC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	233
BfaI	CTAG	2 cut(s)	245, 370
BfoI	RGCGCY	1 cut(s)	232
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	254
BpuEI	CTTGAG	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	233
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	3 cut(s)	33, 240, 261
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	2 cut(s)	239, 303
BslI	CCNNNNNNNGG	1 cut(s)	82
BsnI	GGCC	2 cut(s)	239, 303
Bsp143I	GATC	2 cut(s)	3, 157
BspANI	GGCC	2 cut(s)	239, 303
BspCNI	CTCAG	3 cut(s)	32, 241, 262
BspPI	GGATC	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	2 cut(s)	3, 157
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	19, 249, 270
BstENI	CCTNNNNNAGG	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	2 cut(s)	6, 160
BstMBI	GATC	2 cut(s)	3, 157
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 245
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	239, 303
BtsCI	GGATG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	9 cut(s)	122, 155, 194, 239, 248, 269, 303, 320, 368
CviKI_1	RGCY	9 cut(s)	122, 155, 194, 239, 248, 269, 303, 320, 368
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	3 cut(s)	19, 249, 270
DpnI	GATC	2 cut(s)	5, 159
DpnII	GATC	2 cut(s)	3, 157
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	239
EcoNI	CCTNNNNNAGG	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	142
FaiI	YATR	4 cut(s)	29, 99, 140, 165
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	245, 370
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	2 cut(s)	239, 303
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	4 cut(s)	15, 43, 197, 211
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	3 cut(s)	55, 215, 355
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	136, 289, 293
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 245
HpyF3I	CTNAG	3 cut(s)	19, 249, 270
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	3, 157
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	9 cut(s)	6, 45, 164, 176, 218, 245, 305, 318, 368
Lsp1109I	GCAGC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	245, 370
MalI	GATC	2 cut(s)	5, 159
MboI	GATC	2 cut(s)	3, 157
MboII	GAAGA	3 cut(s)	290, 293, 326
MluCI	AATT	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	9
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	6 cut(s)	86, 100, 112, 179, 229, 250
MseI	TTAA	2 cut(s)	81, 254
MslI	CAYNNNNRTG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	131, 245
NdeII	GATC	2 cut(s)	3, 157
NlaIII	CATG	1 cut(s)	142
PceI	AGGCCT	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	43, 197, 211
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	302
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	81, 254
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	3, 157
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	6 cut(s)	25, 111, 157, 171, 250, 322
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	309
SseBI	AGGCCT	1 cut(s)	239
SspMI	CTAG	2 cut(s)	245, 370
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	13, 223
TasI	AATT	1 cut(s)	309
TfiI	GAWTC	3 cut(s)	43, 197, 211
Tru1I	TTAA	2 cut(s)	81, 254
Tru9I	TTAA	2 cut(s)	81, 254
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	80, 155
XagI	CCTNNNNNAGG	1 cut(s)	80
XspI	CTAG	2 cut(s)	245, 370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.