Rw1G013780

Belongs to the TBCA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003164
Physical Location & Seq
Reverse (-)
30764992 .. 30767181
2190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G013780.1

Sequence Viewer

Length: 315 bp
ATGGGAATCTTTGCTATGCACCTGGTGATATGGCAATTCTTAAGGAATCTGAAAATCAAGACCGGCACTTGTAAACGCCTCGTTAAGGAGTTTCATTCTTATGAGAAAGAGGTTGAGAGAGAGGCTGTCAAAACAGCAGACATGAAGGGGAAAGGAGCTGATCCTTATGACCTCAAGCAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGATTCCCGATTGTCAAAAGCGCCTGGAGACCTCACTAGCTGACTTGGATGGTTGGACCATTATTGCAGAAGTTGATAAGTTGTTCCAGACAACGGAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCA

Protein Analysis

104

Amino Acids

12.02

Weight (kDa)

6.12

Isoelectric Point (pI)

19.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCA PF02970 14 - 94 7.3e-28 Tubulin binding cofactor A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 155
AdeI CACNNNGTG 1 cut(s) 25
AfiI CCNNNNNNNGG 2 cut(s) 85, 304
AflII CTTAAG 1 cut(s) 40
AjnI CCWGG 2 cut(s) 21, 234
AluBI AGCT 2 cut(s) 158, 251
AluI AGCT 2 cut(s) 158, 251
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 1 cut(s) 155
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 1 cut(s) 37
AvaII GGWCC 1 cut(s) 267
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 2 cut(s) 23, 236
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 2 cut(s) 248, 313
BfoI RGCGCY 1 cut(s) 235
BfrI CTTAAG 1 cut(s) 40
Bme1390I CCNGG 2 cut(s) 23, 236
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 23, 236
BpmI CTGGAG 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 233
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 304
Bse118I RCCGGY 1 cut(s) 62
BseBI CCWGG 2 cut(s) 23, 236
BseGI GGATG 2 cut(s) 213, 265
BseLI CCNNNNNNNGG 2 cut(s) 85, 304
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 85, 304
BsmAI GTCTC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 233
Bsp143I GATC 1 cut(s) 160
BspPI GGATC 1 cut(s) 155
BspTI CTTAAG 1 cut(s) 40
BspTNI GGTCTC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
BssMI GATC 1 cut(s) 160
Bst2UI CCWGG 2 cut(s) 23, 236
BstAFI CTTAAG 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 195
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 2 cut(s) 213, 265
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 160
BstNI CCWGG 2 cut(s) 23, 236
BstSCI CCNGG 2 cut(s) 21, 234
BtsCI GGATG 2 cut(s) 213, 265
Cac8I GCNNGC 1 cut(s) 195
CfoI GCGC 1 cut(s) 234
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 267
CsiI ACCWGGT 1 cut(s) 21
CviAII CATG 1 cut(s) 142
CviJI RGCY 5 cut(s) 125, 158, 197, 251, 311
CviKI_1 RGCY 5 cut(s) 125, 158, 197, 251, 311
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DraIII CACNNNGTG 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 267
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 21, 234
FaeI CATG 1 cut(s) 145
FaiI YATR 5 cut(s) 17, 31, 102, 143, 168
FatI CATG 1 cut(s) 141
FokI GGATG 2 cut(s) 220, 272
FspBI CTAG 2 cut(s) 248, 313
GlaI GCGC 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 257
HaeII RGCGCY 1 cut(s) 235
HapII CCGG 1 cut(s) 63
HhaI GCGC 1 cut(s) 234
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HinfI GANTC 4 cut(s) 6, 46, 200, 214
HpaII CCGG 1 cut(s) 63
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 3 cut(s) 58, 218, 298
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 19, 278
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 1 cut(s) 232
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 8 cut(s) 8, 35, 76, 167, 179, 221, 248, 311
MabI ACCWGGT 1 cut(s) 21
MaeI CTAG 2 cut(s) 248, 313
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MluCI AATT 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 5 cut(s) 89, 103, 115, 182, 253
MseI TTAA 2 cut(s) 41, 84
MslI CAYNNNNRTG 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 40
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 2 cut(s) 23, 236
MvaI CCWGG 2 cut(s) 23, 236
NdeII GATC 1 cut(s) 160
NlaIII CATG 1 cut(s) 145
PfeI GAWTC 4 cut(s) 6, 46, 200, 214
Psp6I CCWGG 2 cut(s) 21, 234
PspGI CCWGG 2 cut(s) 21, 234
PspPI GGNCC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 2 cut(s) 41, 84
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 267
ScrFI CCNGG 2 cut(s) 23, 236
SetI ASST 6 cut(s) 24, 114, 160, 174, 245, 253
SexAI ACCWGGT 1 cut(s) 21
SinI GGWCC 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 40, 173
SmoI CTYRAG 2 cut(s) 40, 173
Sse9I AATT 1 cut(s) 35
SspMI CTAG 2 cut(s) 248, 313
StyD4I CCNGG 2 cut(s) 21, 234
TasI AATT 1 cut(s) 35
TfiI GAWTC 4 cut(s) 6, 46, 200, 214
Tru1I TTAA 2 cut(s) 41, 84
Tru9I TTAA 2 cut(s) 41, 84
TspDTI ATGAA 2 cut(s) 83, 158
Vha464I CTTAAG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 267
XagI CCTNNNNNAGG 1 cut(s) 83
XspI CTAG 2 cut(s) 248, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.