FvH4_7g08250

Belongs to the TBCA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003164
Physical Location & Seq
Forward (+)
8188730 .. 8194619
5890 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08250.t1

Sequence Viewer

Length: 345 bp
ATGGCAACTCTAAGGAATCTGAAAATCAAGACTGGGACTTGCAAGCGCCTGGTTAAGGAGTTCCATTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAGACAGCTGACATGAAGGATAAAGGAGCTGATCCTTATGACCTCAAGCAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGATCCCCGACTGTCGAAAGCGCCTGGAGGCCTCACTAGCTGACTTAAAAGGAACTTTGGCTGAGTTGGAAGAAGAGTTGAACCAGAAGGAAGGCCCTGAAATTGAAGAAGCTCGAACAATTATTGCAGAAGTTGATAAGCTGTTCCAGACAACAGAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCA

Protein Analysis

115

Amino Acids

13.01

Weight (kDa)

5.07

Isoelectric Point (pI)

31.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCA PF02970 3 - 102 3.2e-31 Tubulin binding cofactor A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 125, 178
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 2 cut(s) 262, 287
AjnI CCWGG 2 cut(s) 48, 204
AluBI AGCT 6 cut(s) 95, 107, 128, 221, 293, 322
AluI AGCT 6 cut(s) 95, 107, 128, 221, 293, 322
AlwI GGATC 2 cut(s) 125, 178
AoxI GGCC 2 cut(s) 210, 274
ApeKI GCWGC 1 cut(s) 95
AspLEI GCGC 2 cut(s) 48, 204
AspS9I GGNCC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 82
BciT130I CCWGG 2 cut(s) 50, 206
BfaI CTAG 2 cut(s) 218, 343
BfoI RGCGCY 2 cut(s) 49, 205
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 2 cut(s) 50, 206
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 2 cut(s) 50, 206
BmrI ACTGGG 1 cut(s) 42
BmuI ACTGGG 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 128
BsaBI GATNNNNATC 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 37
Bse8I GATNNNNATC 1 cut(s) 182
BseBI CCWGG 2 cut(s) 50, 206
BseGI GGATG 1 cut(s) 183
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 2 cut(s) 212, 276
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 2 cut(s) 212, 276
Bsp143I GATC 2 cut(s) 130, 183
BspANI GGCC 2 cut(s) 212, 276
BspCNI CTCAG 1 cut(s) 235
BspPI GGATC 2 cut(s) 125, 178
BsrI ACTGG 1 cut(s) 37
BssMI GATC 2 cut(s) 130, 183
Bst2UI CCWGG 2 cut(s) 50, 206
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 44, 165
BstDEI CTNAG 2 cut(s) 11, 243
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 183
BstH2I RGCGCY 2 cut(s) 49, 205
BstHHI GCGC 2 cut(s) 48, 204
BstKTI GATC 2 cut(s) 133, 186
BstMBI GATC 2 cut(s) 130, 183
BstMWI GCNNNNNNNGC 2 cut(s) 104, 218
BstNI CCWGG 2 cut(s) 50, 206
BstSCI CCNGG 2 cut(s) 48, 204
BstV1I GCAGC 1 cut(s) 82
BsuRI GGCC 2 cut(s) 212, 276
BtsCI GGATG 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 44, 165
CfoI GCGC 2 cut(s) 48, 204
Cfr13I GGNCC 1 cut(s) 275
CviAII CATG 1 cut(s) 112
DdeI CTNAG 2 cut(s) 11, 243
DpnI GATC 2 cut(s) 132, 185
DpnII GATC 2 cut(s) 130, 183
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Eco147I AGGCCT 1 cut(s) 212
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 48, 204
FaeI CATG 1 cut(s) 115
FaiI YATR 3 cut(s) 72, 113, 138
FaqI GGGAC 1 cut(s) 49
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 2 cut(s) 218, 343
GlaI GCGC 2 cut(s) 47, 203
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 227
HaeII RGCGCY 2 cut(s) 49, 205
HaeIII GGCC 2 cut(s) 212, 276
HhaI GCGC 2 cut(s) 48, 204
Hin1II CATG 1 cut(s) 115
Hin6I GCGC 2 cut(s) 46, 202
HinP1I GCGC 2 cut(s) 46, 202
HinfI GANTC 2 cut(s) 16, 170
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 28, 328
HpyAV CCTTC 4 cut(s) 70, 109, 262, 266
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 42, 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 218
HpyF3I CTNAG 2 cut(s) 11, 243
Hsp92II CATG 1 cut(s) 115
HspAI GCGC 2 cut(s) 46, 202
Kzo9I GATC 2 cut(s) 130, 183
LmnI GCTCC 1 cut(s) 125
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 2 cut(s) 218, 343
MalI GATC 2 cut(s) 132, 185
MboI GATC 2 cut(s) 130, 183
MboII GAAGA 3 cut(s) 263, 266, 299
MluCI AATT 2 cut(s) 282, 300
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 4 cut(s) 73, 152, 202, 223
MseI TTAA 2 cut(s) 54, 227
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 107
MspR9I CCNGG 2 cut(s) 50, 206
MvaI CCWGG 2 cut(s) 50, 206
MwoI GCNNNNNNNGC 2 cut(s) 104, 218
NdeII GATC 2 cut(s) 130, 183
NlaIII CATG 1 cut(s) 115
PceI AGGCCT 1 cut(s) 212
PfeI GAWTC 2 cut(s) 16, 170
PkrI GCNGC 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 48, 204
PspGI CCWGG 2 cut(s) 48, 204
PspPI GGNCC 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 2 cut(s) 54, 227
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 2 cut(s) 130, 183
Sau96I GGNCC 1 cut(s) 275
ScrFI CCNGG 2 cut(s) 50, 206
SetI ASST 8 cut(s) 84, 97, 109, 130, 144, 223, 295, 324
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 2 cut(s) 282, 300
SseBI AGGCCT 1 cut(s) 212
SspMI CTAG 2 cut(s) 218, 343
StuI AGGCCT 1 cut(s) 212
StyD4I CCNGG 2 cut(s) 48, 204
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 2 cut(s) 196, 295
TasI AATT 2 cut(s) 282, 300
TfiI GAWTC 2 cut(s) 16, 170
Tru1I TTAA 2 cut(s) 54, 227
Tru9I TTAA 2 cut(s) 54, 227
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 128
XagI CCTNNNNNAGG 1 cut(s) 53
XspI CTAG 2 cut(s) 218, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.