RchiOBHm_Chr1g0341741

Belongs to the TBCA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003164
Physical Location & Seq
Reverse (-)
33476946 .. 33479935
2990 bp
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UTR
Exon/CDS
Intron
PRQ56842

Sequence Viewer

Length: 198 bp
ATGGCAACTGTAAGGAATCTGAAAATCAAGACTGGGACTTGTAAACGCCTCGTTAAGGAGTTTCATTCTTATGAGAAAGAGGTTGAGAGAGAGGCTGCAAAAACAGCAGACATGAAGGGGAAAGGAGCTGATCCTTATGACCTCAAGCAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGATTCCTGATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCA

Protein Analysis

65

Amino Acids

7.43

Weight (kDa)

8.62

Isoelectric Point (pI)

18.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCA PF02970 3 - 65 9e-24 Tubulin binding cofactor A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 55
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AlwI GGATC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 82
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 42
BmuI ACTGGG 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 55
BsmFI GGGAC 1 cut(s) 49
Bsp143I GATC 1 cut(s) 130
BspPI GGATC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 37
BssMI GATC 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 165
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 165
CviAII CATG 1 cut(s) 112
CviJI RGCY 3 cut(s) 95, 128, 167
CviKI_1 RGCY 3 cut(s) 95, 128, 167
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EcoNI CCTNNNNNAGG 1 cut(s) 53
FaeI CATG 1 cut(s) 115
FaiI YATR 3 cut(s) 72, 113, 138
FaqI GGGAC 1 cut(s) 49
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
Hin1II CATG 1 cut(s) 115
HinfI GANTC 3 cut(s) 16, 170, 184
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 28, 188
Hpy8I GTNNAC 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
Hsp92II CATG 1 cut(s) 115
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 3 cut(s) 18, 137, 149
Lsp1109I GCAGC 1 cut(s) 82
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MnlI CCTC 4 cut(s) 59, 73, 85, 152
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 115
PfeI GAWTC 3 cut(s) 16, 170, 184
PkrI GCNGC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 130
SetI ASST 3 cut(s) 84, 130, 144
SgeI CNNG 9 cut(s) 40, 45, 51, 62, 124, 157, 164, 176, 186
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 10
TfiI GAWTC 3 cut(s) 16, 170, 184
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 53, 128
XagI CCTNNNNNAGG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.