Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000488.1

Orthogroup ID

OG0003164

Physical Location & Seq

Genomic Coordinates Reverse (-)

96396 .. 97251

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000488.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atggcaactgtaaggaatctgaaaatcaagactgggacttgtaaacgcctcgttaaggagtttgattcttatgagaaagaggttgtgagagaggctgtgaaaacaacagacatgaaggggaaaggagttgatccttatgacctcaagcaacaggattgtattggcgctattgatggtgttcatgttcaagctcggacaatgcgtatgaagaagatggtccgggaagacaagaaattgagattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCA

Protein Analysis

81

Amino Acids

9.39

Weight (kDa)

9.73

Isoelectric Point (pI)

23.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30410 AT2G30410 AT2G30410
fragaria_vesca	FvH4_7g07840 FvH4_7g08250 FvH4_7g08250
malus_domestica	MD02G1232800.v1.1 MD07G1080900.v1.1
prunus_persica	Prupe.2G105900_v2.0.a1
pyrus_communis	pycom02g20090 pycom07g06430
rosa_chinensis	RchiOBHm_Chr1g0341631 RchiOBHm_Chr1g0341741 RchiOBHm_Chr1g0341961 RchiOBHm_Chr1g0342531 RchiOBHm_Chr3g0457191 RchiOBHm_Chr4g0446751
rosa_laevigata	RLG00000029106
rosa_multiflora	Rmu_sc0000488.1_g000017 Rmu_sc0001400.1_g000027 Rmu_sc0005331.1_g000001 Rmu_sc0007075.1_g000018
rosa_roxburghii	Rroxscaffold_4G00312280 Rroxscaffold_4G00312330
rosa_rugosa	Rorug01G0147400.1 Rorug01G0150200.1 Rorug01G0154700.1
rosa_samantha	Rh1AG170400 Rh1BG131700 Rh1BG138200 Rh1CG158600 Rh1DG170500 Rh6BG195800
rosa_wichuraiana	Rw0G017560 Rw1G013780 Rw1G014170 Rw3G006810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	188
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
AlwI	GGATC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	231
BccI	CCATC	2 cut(s)	167, 208
BcnI	CCSGG	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	37
BssMI	GATC	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	10
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	231
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	217
CviAII	CATG	2 cut(s)	112, 182
CviJI	RGCY	2 cut(s)	95, 191
CviKI_1	RGCY	2 cut(s)	95, 191
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	217
EcoNI	CCTNNNNNAGG	1 cut(s)	53
FaeI	CATG	2 cut(s)	115, 185
FaiI	YATR	5 cut(s)	72, 113, 138, 183, 206
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	111, 181
GlaI	GCGC	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	168
HapII	CCGG	1 cut(s)	220
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	2 cut(s)	115, 185
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	2 cut(s)	16, 65
HpaII	CCGG	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	44
Hpy188I	TCNGA	2 cut(s)	21, 195
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	115, 185
HspAI	GCGC	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	3 cut(s)	18, 137, 233
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	220, 223, 236
MluCI	AATT	1 cut(s)	233
MnlI	CCTC	4 cut(s)	59, 73, 85, 152
MseI	TTAA	2 cut(s)	54, 244
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	221
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	115, 185
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	16, 65
PfoI	TCCNGGA	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	54, 244
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	3 cut(s)	84, 144, 193
SinI	GGWCC	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	10
TasI	AATT	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	16, 65
Tru1I	TTAA	2 cut(s)	54, 244
Tru9I	TTAA	2 cut(s)	54, 244
TspDTI	ATGAA	3 cut(s)	128, 170, 221
VpaK11BI	GGWCC	1 cut(s)	217
XagI	CCTNNNNNAGG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.