Rh1BG131700

Belongs to the TBCA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003164
Physical Location & Seq
Reverse (-)
22090716 .. 22091552
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG131700.1

Sequence Viewer

Length: 258 bp
ATGGCAACTGTAAGGAATCTGAAAATCAAGACTGGCACTTGTAAACGCCTCGTTAAGGAGTTTCATTCTTATGAGAAAGAGGTTGAGAGAGAGGCTGCGAAAACAGCAGACATGAAGGGGAAAGGAGCTGATCCTTATGACCTCAAGCAACAGGCTGAGTTAGAAGAAGAGTTGAACCAGAAGGAAGGCCCTGAAATTGAAGAAGCTCGGACCATTATTGCAGAAGTTGATAAGTTGTTCCAGACAACGGAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCA

Protein Analysis

85

Amino Acids

9.7

Weight (kDa)

5.1

Isoelectric Point (pI)

29.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCA PF02970 3 - 59 1.6e-16 Tubulin binding cofactor A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 55, 247
AgsI TTSAA 2 cut(s) 175, 200
AluBI AGCT 2 cut(s) 128, 206
AluI AGCT 2 cut(s) 128, 206
AlwI GGATC 1 cut(s) 125
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 95
AspS9I GGNCC 2 cut(s) 188, 210
AvaII GGWCC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 82
BfaI CTAG 1 cut(s) 256
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 188, 210
BpuEI CTTGAG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 247
Bse1I ACTGG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 55, 247
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 55, 247
BsnI GGCC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 148
BspPI GGATC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 37
BssMI GATC 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 156
BstENI CCTNNNNNAGG 1 cut(s) 53
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 188, 210
CviAII CATG 1 cut(s) 112
CviJI RGCY 6 cut(s) 95, 128, 155, 189, 206, 254
CviKI_1 RGCY 6 cut(s) 95, 128, 155, 189, 206, 254
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 210
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 188
FaeI CATG 1 cut(s) 115
FaiI YATR 3 cut(s) 72, 113, 138
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 256
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 189
Hin1II CATG 1 cut(s) 115
HinfI GANTC 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 44
Hpy188I TCNGA 2 cut(s) 21, 210
Hpy188III TCNNGA 2 cut(s) 28, 241
Hpy8I GTNNAC 1 cut(s) 44
HpyAV CCTTC 3 cut(s) 109, 175, 179
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 1 cut(s) 115
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 5 cut(s) 18, 137, 191, 204, 254
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 256
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 176, 179, 212
MluCI AATT 1 cut(s) 195
MnlI CCTC 4 cut(s) 59, 73, 85, 152
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 115
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 1 cut(s) 97
PspPI GGNCC 2 cut(s) 188, 210
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 2 cut(s) 188, 210
SetI ASST 4 cut(s) 84, 130, 144, 208
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 1 cut(s) 195
SspMI CTAG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 10
TasI AATT 1 cut(s) 195
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 53, 128
VpaK11BI GGWCC 1 cut(s) 210
XagI CCTNNNNNAGG 1 cut(s) 53
XspI CTAG 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.