Rh1CG158600

Belongs to the TBCA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003164
Physical Location & Seq
Forward (+)
35120078 .. 35131011
10934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG158600.1

Sequence Viewer

Length: 390 bp
ATGTTTCTTGGAAGACCTTCATGGTACTATGGACTCTCAGGTGATATGGCAACTGTAAGGAATCTGAAAATCAAGACTGGCACTTGTAAACGCCTCGTTAGGGAGTTTCATTCTTATGAGAAAGAGGTTGAGAGAGAGGCTGCGAAAACAGCAGACATGAAGGGGAAAGGAGCTGATCCTTATGACCTCAAGCAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGATTCCCGATTGTCGAAAGCGCCTGGAGGCCTCACTAGCTGAGTTAAAAGGAACTTTGGCTGAGTTGGAAGAAGAGTTGAACCAGAAGGAAGGCCCTGAAATTGAAGAAGCTCGGACCATTATTGCAGAAGTCGATAAGTTGTTCCAGACAACAGAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCA

Protein Analysis

129

Amino Acids

14.71

Weight (kDa)

5.22

Isoelectric Point (pI)

30.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCA PF02970 18 - 117 7.8e-30 Tubulin binding cofactor A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 170
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 2 cut(s) 307, 332
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 3 cut(s) 173, 266, 338
AluI AGCT 3 cut(s) 173, 266, 338
AlwI GGATC 1 cut(s) 170
AoxI GGCC 2 cut(s) 255, 319
ApeKI GCWGC 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 320, 342
AsuHPI GGTGA 1 cut(s) 53
AvaII GGWCC 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 251
BfaI CTAG 2 cut(s) 263, 388
BfoI RGCGCY 1 cut(s) 250
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 320, 342
BmrFI CCNGG 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 3 cut(s) 51, 258, 279
BseNI ACTGG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 127
BshFI GGCC 2 cut(s) 257, 321
BslI CCNNNNNNNGG 1 cut(s) 100
BsnI GGCC 2 cut(s) 257, 321
Bsp143I GATC 1 cut(s) 175
BspANI GGCC 2 cut(s) 257, 321
BspCNI CTCAG 3 cut(s) 50, 259, 280
BspPI GGATC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 82
BssMI GATC 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 3 cut(s) 37, 267, 288
BstF5I GGATG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 1 cut(s) 178
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 149, 263
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 19
BsuRI GGCC 2 cut(s) 257, 321
BtsCI GGATG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 210
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 2 cut(s) 320, 342
Csp6I GTAC 1 cut(s) 25
CviAII CATG 2 cut(s) 21, 157
CviJI RGCY 9 cut(s) 140, 173, 212, 257, 266, 287, 321, 338, 386
CviKI_1 RGCY 9 cut(s) 140, 173, 212, 257, 266, 287, 321, 338, 386
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 3 cut(s) 37, 267, 288
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco147I AGGCCT 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 249
FaeI CATG 2 cut(s) 24, 160
FaiI YATR 6 cut(s) 22, 30, 47, 117, 158, 183
FatI CATG 2 cut(s) 20, 156
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 2 cut(s) 263, 388
GlaI GCGC 1 cut(s) 248
GluI GCNGC 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 272
HaeII RGCGCY 1 cut(s) 250
HaeIII GGCC 2 cut(s) 257, 321
HhaI GCGC 1 cut(s) 249
Hin1II CATG 2 cut(s) 24, 160
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HinfI GANTC 4 cut(s) 33, 61, 215, 229
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 2 cut(s) 66, 342
Hpy188III TCNNGA 3 cut(s) 73, 233, 373
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 4 cut(s) 27, 154, 307, 311
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 263
HpyF3I CTNAG 3 cut(s) 37, 267, 288
Hsp92II CATG 2 cut(s) 24, 160
HspAI GCGC 1 cut(s) 247
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 9 cut(s) 24, 63, 182, 194, 236, 263, 323, 336, 386
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 2 cut(s) 263, 388
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 4 cut(s) 24, 308, 311, 344
MluCI AATT 1 cut(s) 327
MlyI GAGTC 1 cut(s) 27
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 6 cut(s) 104, 118, 130, 197, 247, 268
MroXI GAANNNNTTC 1 cut(s) 16
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 2 cut(s) 149, 263
NdeII GATC 1 cut(s) 175
NlaIII CATG 2 cut(s) 24, 160
PceI AGGCCT 1 cut(s) 257
PdmI GAANNNNTTC 1 cut(s) 16
PfeI GAWTC 3 cut(s) 61, 215, 229
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspPI GGNCC 2 cut(s) 320, 342
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 2 cut(s) 320, 342
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 1 cut(s) 251
SetI ASST 7 cut(s) 19, 43, 129, 175, 189, 268, 340
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 327
SseBI AGGCCT 1 cut(s) 257
SspMI CTAG 2 cut(s) 263, 388
StuI AGGCCT 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 2 cut(s) 241, 360
TasI AATT 1 cut(s) 327
TfiI GAWTC 3 cut(s) 61, 215, 229
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 3 cut(s) 9, 98, 173
VpaK11BI GGWCC 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 16
XspI CTAG 2 cut(s) 263, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.