Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003164

Physical Location & Seq

Genomic Coordinates Forward (+)

5741090 .. 5743633

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g06430.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTGGGTGGTTGGCACAGAGGATTGGACACAGCAGAACACACCCGAAAGAGAGGAAAAGGCGAAAGAATACGGAATCGGGTTTTGTCCACTTCATCTTCGTCTCCAGTTTGCTGCCATCATTGTACTGCTCTCCCTCACTTGTAAGAGCAGCATCCCACCCAAAAGCTCCTATATTTACAACAGTGTAGTTACCATGGCAACCCTAAGAAATCTGAAAATCAAAACTGGTACTTGCAAACGCATCGTTAAGGAGCTTCATTCATATGAGAAAGAGGTTGAGAGAGAAGCTGCAAAAACAGCAGACATGAAAGAGAAAGGAGCTGATCCTTATGATCTGAAGCAACAGGAAAATGTGCTGGCTGAATCTAGGATGATGATTCCCGATTGCCGGAAACGCTTGGAGGCCTCATTAGCTGACCTGAAAGAAATTTTGGCTGAAGTAGAAGAAGAGTTGAACCAGAAGGAAGGCCCTGAAATTGAAGAAGCTCGAACCATTATTGGAGAAGTTGATACACTGTTTCAGACAACAGAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCA

Protein Analysis

180

Amino Acids

20.39

Weight (kDa)

5.09

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30410 AT2G30410 AT2G30410
fragaria_vesca	FvH4_7g07840 FvH4_7g08250 FvH4_7g08250
malus_domestica	MD02G1232800.v1.1 MD07G1080900.v1.1
prunus_persica	Prupe.2G105900_v2.0.a1
pyrus_communis	pycom02g20090 pycom07g06430
rosa_chinensis	RchiOBHm_Chr1g0341631 RchiOBHm_Chr1g0341741 RchiOBHm_Chr1g0341961 RchiOBHm_Chr1g0342531 RchiOBHm_Chr3g0457191 RchiOBHm_Chr4g0446751
rosa_laevigata	RLG00000029106
rosa_multiflora	Rmu_sc0000488.1_g000017 Rmu_sc0001400.1_g000027 Rmu_sc0005331.1_g000001 Rmu_sc0007075.1_g000018
rosa_roxburghii	Rroxscaffold_4G00312280 Rroxscaffold_4G00312330
rosa_rugosa	Rorug01G0147400.1 Rorug01G0150200.1 Rorug01G0154700.1
rosa_samantha	Rh1AG170400 Rh1BG131700 Rh1BG138200 Rh1CG158600 Rh1DG170500 Rh6BG195800
rosa_wichuraiana	Rw0G017560 Rw1G013780 Rw1G014170 Rw3G006810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	429
AcuI	CTGAAG	2 cut(s)	359, 459
AfaI	GTAC	2 cut(s)	126, 232
AfiI	CCNNNNNNNGG	1 cut(s)	390
AgsI	TTSAA	2 cut(s)	457, 482
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	6 cut(s)	168, 256, 290, 323, 416, 488
AluI	AGCT	6 cut(s)	168, 256, 290, 323, 416, 488
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	320
AoxI	GGCC	2 cut(s)	405, 469
ApeKI	GCWGC	3 cut(s)	113, 150, 290
ApoI	RAATTY	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	470
BbvI	GCAGC	3 cut(s)	100, 162, 277
BccI	CCATC	1 cut(s)	125
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	1 cut(s)	369
BisI	GCNGC	3 cut(s)	114, 151, 291
BlsI	GCNGC	3 cut(s)	115, 152, 292
BmgT120I	GGNCC	1 cut(s)	470
BmsI	GCATC	2 cut(s)	162, 252
BpmI	CTGGAG	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse1I	ACTGG	2 cut(s)	106, 232
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	153, 378
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	106, 232
BseXI	GCAGC	3 cut(s)	100, 162, 277
BshFI	GGCC	2 cut(s)	407, 471
BsiSI	CCGG	1 cut(s)	391
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	1 cut(s)	107
BsmBI	CGTCTC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	407, 471
Bsp143I	GATC	2 cut(s)	325, 334
Bsp19I	CCATGG	1 cut(s)	195
BspANI	GGCC	2 cut(s)	407, 471
BspPI	GGATC	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	106, 232
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	2 cut(s)	325, 334
BssT1I	CCWWGG	1 cut(s)	195
Bst4CI	ACNGT	2 cut(s)	185, 519
Bst6I	CTCTTC	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	153, 378
BstKTI	GATC	2 cut(s)	328, 337
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	325, 334
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 396, 413
BstV1I	GCAGC	3 cut(s)	100, 162, 277
BsuRI	GGCC	2 cut(s)	407, 471
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	153, 378
BtsIMutI	CAGTG	2 cut(s)	190, 515
Cac8I	GCNNGC	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	470
Csp6I	GTAC	2 cut(s)	125, 231
CviAII	CATG	2 cut(s)	196, 307
CviQI	GTAC	2 cut(s)	125, 231
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	2 cut(s)	327, 336
DpnII	GATC	2 cut(s)	325, 334
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Eco130I	CCWWGG	1 cut(s)	195
Eco147I	AGGCCT	1 cut(s)	407
Eco57I	CTGAAG	2 cut(s)	359, 459
EcoO109I	RGGNCCY	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	2 cut(s)	199, 310
FaiI	YATR	6 cut(s)	174, 197, 265, 267, 308, 333
FatI	CATG	2 cut(s)	195, 306
FauNDI	CATATG	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	114, 151, 291
FokI	GGATG	2 cut(s)	140, 385
Fsp4HI	GCNGC	3 cut(s)	114, 151, 291
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	3 cut(s)	114, 151, 291
GsuI	CTGGAG	1 cut(s)	89
HaeIII	GGCC	2 cut(s)	407, 471
HapII	CCGG	1 cut(s)	391
Hin1II	CATG	2 cut(s)	199, 310
HinfI	GANTC	3 cut(s)	75, 365, 379
HpaII	CCGG	1 cut(s)	391
Hpy166II	GTNNAC	1 cut(s)	89
Hpy188I	TCNGA	3 cut(s)	216, 339, 525
Hpy188III	TCNNGA	1 cut(s)	383
Hpy8I	GTNNAC	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	457, 461
HpyCH4III	ACNGT	2 cut(s)	185, 519
HpyCH4V	TGCA	2 cut(s)	237, 293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 396, 413
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	199, 310
Kzo9I	GATC	2 cut(s)	325, 334
LmnI	GCTCC	3 cut(s)	173, 253, 320
LpnPI	CCDG	8 cut(s)	119, 213, 332, 344, 404, 434, 473, 486
Lsp1109I	GCAGC	3 cut(s)	100, 162, 277
LweI	GCATC	2 cut(s)	162, 252
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	327, 336
MboI	GATC	2 cut(s)	325, 334
MboII	GAAGA	4 cut(s)	89, 458, 461, 494
MluCI	AATT	2 cut(s)	429, 477
MnlI	CCTC	6 cut(s)	13, 46, 146, 268, 397, 418
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	3 cut(s)	299, 396, 413
NcoI	CCATGG	1 cut(s)	195
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	2 cut(s)	325, 334
NlaIII	CATG	2 cut(s)	199, 310
PceI	AGGCCT	1 cut(s)	407
PfeI	GAWTC	3 cut(s)	75, 365, 379
PkrI	GCNGC	3 cut(s)	115, 152, 292
PspPI	GGNCC	1 cut(s)	470
RsaI	GTAC	2 cut(s)	126, 232
RsaNI	GTAC	2 cut(s)	125, 231
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	3 cut(s)	114, 151, 291
Sau3AI	GATC	2 cut(s)	325, 334
Sau96I	GGNCC	1 cut(s)	470
SetI	ASST	8 cut(s)	170, 258, 279, 292, 325, 418, 423, 490
SfaNI	GCATC	2 cut(s)	162, 252
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	2 cut(s)	429, 477
SseBI	AGGCCT	1 cut(s)	407
SspMI	CTAG	1 cut(s)	369
StuI	AGGCCT	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	185, 519
TaqI	TCGA	1 cut(s)	490
TasI	AATT	2 cut(s)	429, 477
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	3 cut(s)	75, 365, 379
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	2 cut(s)	190, 522
TseI	GCWGC	3 cut(s)	113, 150, 290
TspDTI	ATGAA	4 cut(s)	83, 248, 252, 323
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	2 cut(s)	190, 522
XapI	RAATTY	1 cut(s)	429
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.