Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005331.1

Orthogroup ID

OG0003164

Physical Location & Seq

Genomic Coordinates Reverse (-)

4019 .. 7468

Gene Structure 3450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgtggcacttatcagtcgggcaaacggagaggcaattatcagtcatcgaattgcctgggcatgtggcccccagtcgccggcaacgcatcccgacttcagcactctcaggtgatatggcaactctaaggaatctgaaaatcaagactggcacttgtaaacgccttgttaaggagtttcattcttatgagaaagaggttgagagagaggctgcaaaaacagcagacatgaaggggaaaggagctgatccttatgacctcaagcaacaggaaaatgtgctggctgaatcaaggatgatgattcctgattgtcaaaagcgcctggaggcctcactagctgagttaaaaggaactttggctgagttggaagaagagttgaaccagaaggaaggccctgaaatagaagaagctcggactattattgcagaagttaataagttgttccagacaacggaagcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCA

Protein Analysis

152

Amino Acids

17.13

Weight (kDa)

5.74

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30410 AT2G30410 AT2G30410
fragaria_vesca	FvH4_7g07840 FvH4_7g08250 FvH4_7g08250
malus_domestica	MD02G1232800.v1.1 MD07G1080900.v1.1
prunus_persica	Prupe.2G105900_v2.0.a1
pyrus_communis	pycom02g20090 pycom07g06430
rosa_chinensis	RchiOBHm_Chr1g0341631 RchiOBHm_Chr1g0341741 RchiOBHm_Chr1g0341961 RchiOBHm_Chr1g0342531 RchiOBHm_Chr3g0457191 RchiOBHm_Chr4g0446751
rosa_laevigata	RLG00000029106
rosa_multiflora	Rmu_sc0000488.1_g000017 Rmu_sc0001400.1_g000027 Rmu_sc0005331.1_g000001 Rmu_sc0007075.1_g000018
rosa_roxburghii	Rroxscaffold_4G00312280 Rroxscaffold_4G00312330
rosa_rugosa	Rorug01G0147400.1 Rorug01G0150200.1 Rorug01G0154700.1
rosa_samantha	Rh1AG170400 Rh1BG131700 Rh1BG138200 Rh1CG158600 Rh1DG170500 Rh6BG195800
rosa_wichuraiana	Rw0G017560 Rw1G013780 Rw1G014170 Rw3G006810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	81
AfiI	CCNNNNNNNGG	3 cut(s)	78, 169, 448
AgsI	TTSAA	1 cut(s)	376
AjnI	CCWGG	2 cut(s)	55, 318
AluBI	AGCT	3 cut(s)	242, 335, 407
AluI	AGCT	3 cut(s)	242, 335, 407
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	3 cut(s)	66, 324, 388
ApeKI	GCWGC	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	2 cut(s)	67, 389
AsuHPI	GGTGA	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	196
BciT130I	CCWGG	2 cut(s)	57, 320
BfaI	CTAG	2 cut(s)	332, 457
BfoI	RGCGCY	1 cut(s)	319
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	2 cut(s)	57, 320
BmgT120I	GGNCC	2 cut(s)	67, 389
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	2 cut(s)	57, 320
BmrI	ACTGGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 169, 448
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	72, 151
BseBI	CCWGG	2 cut(s)	57, 320
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	2 cut(s)	87, 297
BseLI	CCNNNNNNNGG	3 cut(s)	78, 169, 448
BseMII	CTCAG	3 cut(s)	120, 327, 348
BseNI	ACTGG	2 cut(s)	72, 151
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	3 cut(s)	68, 326, 390
BsiSI	CCGG	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	78, 169, 448
BsnI	GGCC	3 cut(s)	68, 326, 390
Bsp143I	GATC	1 cut(s)	244
BspANI	GGCC	3 cut(s)	68, 326, 390
BspCNI	CTCAG	3 cut(s)	119, 328, 349
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	72, 151
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	57, 320
Bst6I	CTCTTC	1 cut(s)	363
BstC8I	GCNNGC	2 cut(s)	80, 279
BstDEI	CTNAG	4 cut(s)	106, 125, 336, 357
BstENI	CCTNNNNNAGG	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	87, 297
BstH2I	RGCGCY	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 218, 332
BstNI	CCWGG	2 cut(s)	57, 320
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	55, 318
BstV1I	GCAGC	1 cut(s)	196
BsuRI	GGCC	3 cut(s)	68, 326, 390
BtsCI	GGATG	2 cut(s)	87, 297
Cac8I	GCNNGC	2 cut(s)	80, 279
CfoI	GCGC	1 cut(s)	318
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	67, 389
CviAII	CATG	2 cut(s)	62, 226
DdeI	CTNAG	4 cut(s)	106, 125, 336, 357
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco147I	AGGCCT	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	81
EcoNI	CCTNNNNNAGG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	55, 318
FaeI	CATG	2 cut(s)	65, 229
FaiI	YATR	5 cut(s)	63, 116, 186, 227, 252
FatI	CATG	2 cut(s)	61, 225
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	2 cut(s)	74, 304
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	2 cut(s)	332, 457
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	319
HaeIII	GGCC	3 cut(s)	68, 326, 390
HapII	CCGG	1 cut(s)	79
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	65, 229
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	3 cut(s)	130, 284, 298
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	135, 411
Hpy188III	TCNNGA	4 cut(s)	91, 142, 302, 442
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	223, 376, 380
HpyCH4V	TGCA	2 cut(s)	212, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 218, 332
HpyF3I	CTNAG	4 cut(s)	106, 125, 336, 357
Hsp92II	CATG	2 cut(s)	65, 229
HspAI	GCGC	1 cut(s)	316
KroI	GCCGGC	1 cut(s)	78
KroNI	GCCGGC	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	2 cut(s)	332, 457
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	3 cut(s)	377, 380, 413
MluCI	AATT	2 cut(s)	35, 50
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	6 cut(s)	24, 187, 199, 266, 316, 337
MroNI	GCCGGC	1 cut(s)	78
MseI	TTAA	3 cut(s)	168, 341, 429
MslI	CAYNNNNRTG	1 cut(s)	183
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	2 cut(s)	57, 320
MvaI	CCWGG	2 cut(s)	57, 320
MwoI	GCNNNNNNNGC	3 cut(s)	84, 218, 332
NaeI	GCCGGC	1 cut(s)	80
NdeII	GATC	1 cut(s)	244
NgoMIV	GCCGGC	1 cut(s)	78
NlaIII	CATG	2 cut(s)	65, 229
NlaIV	GGNNCC	1 cut(s)	69
NspI	RCATGY	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	326
PdiI	GCCGGC	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	130, 284, 298
PkrI	GCNGC	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	55, 318
PspGI	CCWGG	2 cut(s)	55, 318
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	67, 389
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	168, 341, 429
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	2 cut(s)	67, 389
ScrFI	CCNGG	2 cut(s)	57, 320
SetI	ASST	6 cut(s)	112, 198, 244, 258, 337, 409
SfaNI	GCATC	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	2 cut(s)	35, 50
SseBI	AGGCCT	1 cut(s)	326
SspMI	CTAG	2 cut(s)	332, 457
StuI	AGGCCT	1 cut(s)	326
StyD4I	CCNGG	2 cut(s)	55, 318
TaqI	TCGA	1 cut(s)	48
TasI	AATT	2 cut(s)	35, 50
TfiI	GAWTC	3 cut(s)	130, 284, 298
Tru1I	TTAA	3 cut(s)	168, 341, 429
Tru9I	TTAA	3 cut(s)	168, 341, 429
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	167, 242
TspGWI	ACGGA	1 cut(s)	41
XagI	CCTNNNNNAGG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	65
XspI	CTAG	2 cut(s)	332, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.