Rh1DG170500

Belongs to the TBCA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003164
Physical Location & Seq
Forward (+)
35109747 .. 35212638
102892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG170500.1

Sequence Viewer

Length: 495 bp
ATGTGCTCTCACTCTCCAGTCTCTCCTCTTGATAGACATCTACGGGTGGTCGCCGCCATCCTTACCTTCACTCGGAGCGTCGATATATTTCTTGCAGAATCTCTACATCTTCGCCACCTTGTCAACTATAGTCGACGACTCTCAGGTGATATGGCAACTGTCAGGAATCTGAAAATCAAGACTGGCACTTGTAAACGCCTCGTTAGGGAGTTTCATTCTTATGAGAAAGAGGTTGAGAGAGAGGCTGCGAAAACAGCAGACATGAAGGGGAAAGGAGCTGATCCTTATGACCTCAAGCAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGATTCCCGATTGTCGAAAGCGCCTGGAGGCCTCACTAGCTGAGTTAAAAGGAACTTTGGCTGAGTTGGAAGAAGAGTTGAACCAGAAGGAAGGCCCTGAAATTGAAGAAGCTCGGACCATTATTGCAGAAGTCGATAAGTTGTTCCAGACAACAGAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCA

Protein Analysis

164

Amino Acids

18.65

Weight (kDa)

6.24

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCA PF02970 53 - 152 1.7e-29 Tubulin binding cofactor A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 133
AciI CCGC 1 cut(s) 54
AclWI GGATC 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 72, 205
AgsI TTSAA 2 cut(s) 412, 437
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 3 cut(s) 278, 371, 443
AluI AGCT 3 cut(s) 278, 371, 443
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 1 cut(s) 275
AoxI GGCC 2 cut(s) 360, 424
ApeKI GCWGC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 425, 447
AsuHPI GGTGA 1 cut(s) 158
AvaII GGWCC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 232
BccI CCATC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 2 cut(s) 368, 493
BfmI CTRYAG 1 cut(s) 127
BfoI RGCGCY 1 cut(s) 355
BisI GCNGC 2 cut(s) 54, 246
BlsI GCNGC 2 cut(s) 55, 247
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 447
BmgT120I GGNCC 2 cut(s) 425, 447
BmrFI CCNGG 1 cut(s) 356
BpmI CTGGAG 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 36
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 205
Bse1I ACTGG 2 cut(s) 17, 187
Bse8I GATNNNNATC 1 cut(s) 36
BseBI CCWGG 1 cut(s) 356
BseGI GGATG 2 cut(s) 57, 333
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 2 cut(s) 72, 205
BseMII CTCAG 3 cut(s) 156, 363, 384
BseNI ACTGG 2 cut(s) 17, 187
BseRI GAGGAG 1 cut(s) 15
BseXI GCAGC 1 cut(s) 232
BshFI GGCC 2 cut(s) 362, 426
BsiHKAI GWGCWC 1 cut(s) 8
BslI CCNNNNNNNGG 2 cut(s) 72, 205
BsmAI GTCTC 1 cut(s) 25
BsnI GGCC 2 cut(s) 362, 426
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 1 cut(s) 54
BspANI GGCC 2 cut(s) 362, 426
BspCNI CTCAG 3 cut(s) 155, 364, 385
BspPI GGATC 1 cut(s) 275
BsrI ACTGG 2 cut(s) 17, 187
BssMI GATC 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 3 cut(s) 142, 372, 393
BstF5I GGATG 2 cut(s) 57, 333
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 2 cut(s) 254, 368
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 232
BsuRI GGCC 2 cut(s) 362, 426
BtsCI GGATG 2 cut(s) 57, 333
Cac8I GCNNGC 1 cut(s) 315
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 425, 447
CseI GACGC 1 cut(s) 67
CviAII CATG 1 cut(s) 262
CviJI RGCY 9 cut(s) 245, 278, 317, 362, 371, 392, 426, 443, 491
CviKI_1 RGCY 9 cut(s) 245, 278, 317, 362, 371, 392, 426, 443, 491
DdeI CTNAG 3 cut(s) 142, 372, 393
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco147I AGGCCT 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 354
FaeI CATG 1 cut(s) 265
FaiI YATR 6 cut(s) 86, 129, 152, 222, 263, 288
FatI CATG 1 cut(s) 261
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 54, 246
FokI GGATG 2 cut(s) 44, 340
Fsp4HI GCNGC 2 cut(s) 54, 246
FspBI CTAG 2 cut(s) 368, 493
GlaI GCGC 1 cut(s) 353
GluI GCNGC 2 cut(s) 54, 246
GsuI CTGGAG 1 cut(s) 377
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 2 cut(s) 362, 426
HgaI GACGC 1 cut(s) 67
HhaI GCGC 1 cut(s) 354
Hin1II CATG 1 cut(s) 265
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HincII GTYRAC 2 cut(s) 124, 134
HindII GTYRAC 2 cut(s) 124, 134
HinfI GANTC 5 cut(s) 98, 138, 166, 320, 334
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 3 cut(s) 124, 134, 194
Hpy188I TCNGA 3 cut(s) 75, 171, 447
Hpy188III TCNNGA 5 cut(s) 29, 163, 178, 338, 478
Hpy8I GTNNAC 3 cut(s) 124, 134, 194
Hpy99I CGWCG 2 cut(s) 83, 138
HpyAV CCTTC 4 cut(s) 76, 259, 412, 416
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 95, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 368
HpyF3I CTNAG 3 cut(s) 142, 372, 393
Hsp92II CATG 1 cut(s) 265
HspAI GCGC 1 cut(s) 352
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 2 cut(s) 75, 275
Lsp1109I GCAGC 1 cut(s) 232
MaeI CTAG 2 cut(s) 368, 493
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 4 cut(s) 101, 413, 416, 449
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 432
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 7 cut(s) 36, 209, 223, 235, 302, 352, 373
MseI TTAA 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 254, 368
NdeII GATC 1 cut(s) 280
NlaIII CATG 1 cut(s) 265
PceI AGGCCT 1 cut(s) 362
PfeI GAWTC 4 cut(s) 98, 166, 320, 334
PkrI GCNGC 2 cut(s) 55, 247
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspPI GGNCC 2 cut(s) 425, 447
RseI CAYNNNNRTG 1 cut(s) 219
SalI GTCGAC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 377
SatI GCNGC 2 cut(s) 54, 246
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 2 cut(s) 425, 447
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 1 cut(s) 8
SetI ASST 8 cut(s) 68, 120, 148, 234, 280, 294, 373, 445
SfcI CTRYAG 1 cut(s) 127
SinI GGWCC 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 1 cut(s) 432
SseBI AGGCCT 1 cut(s) 362
SsiI CCGC 1 cut(s) 54
SspMI CTAG 2 cut(s) 368, 493
StuI AGGCCT 1 cut(s) 362
StyD4I CCNGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 4 cut(s) 81, 133, 346, 465
TasI AATT 1 cut(s) 432
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 4 cut(s) 98, 166, 320, 334
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 203, 278
VpaK11BI GGWCC 1 cut(s) 447
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 2 cut(s) 368, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.