RLG00000029106

Belongs to the TBCA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003164
Physical Location & Seq
Reverse (-)
33067302 .. 33070775
3474 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029106

Sequence Viewer

Length: 738 bp
ATGATCGACGGTGGAAGCCAACAGGTCTGTGGACATGGTGTCGACGGCAGTAGCTACAGGGTTCTGGGAGCTTCCATTGATGCACAATTTGGATCTGGATTCAACTGGGCCTGCTGGGTTTTGAGCTTCAGTTGGGTTTCACCACCGAAGAAGAAGAAGGTTGGGCGCCCCAAAGGGAGCAAGAATAGGGTGAAATCCACTGATGAACAAGATGTGAAAAAGCTGCGTAAGTATAAGCGTCGGGGAAAAGCTTTGAGTTTTGATTCAAACCTTGAAGATTCTGATCCTAACAAGTGTAAAGTGCCTATTACAAAACGACTCATCGCTGGGAAGTGGACTGGAGGACGCGACAGTCGCCGGCTACGCATCCCGACTTCAGCACTCTCAGGTGATATGGCAACTGTAAGGAATCTGAAAATCAAGACTGGCACTTGCAAACGCCTCGTTAAGGAGTTTCACTCTTATGAGAAAGAGGTTGAGAGAGAGGCTGCGAAAACAGCAGACATGAAGGGGAAAGGAGCTGATCCTTATGACCTCAAGCAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGATTCCCGATTGTCGAAAGCGCCTGGAGGCCTCACTAGCTGAGTTAAAAGGAACTTTGGCTGAGTTGGAAGAAGAGTTGAACCAGAAGGAAGGCCCTGAAATTGAAGAAGCTCGGACCATTATTGCAGAAGTTGATAAGTTGTTCCAGACTACAGAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TBCA

Protein Analysis

246

Amino Acids

27.37

Weight (kDa)

9.38

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBCA PF02970 134 - 233 9.6e-30 Tubulin binding cofactor A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 351
AccB1I GGYRCC 1 cut(s) 165
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 348
AclWI GGATC 3 cut(s) 100, 278, 518
AcuI CTGAAG 2 cut(s) 112, 360
AcyI GRCGYC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 448
AgsI TTSAA 5 cut(s) 103, 267, 275, 655, 680
AhdI GACNNNNNGTC 1 cut(s) 38
AjnI CCWGG 1 cut(s) 597
AluBI AGCT 8 cut(s) 54, 71, 126, 223, 251, 521, 614, 686
AluI AGCT 8 cut(s) 54, 71, 126, 223, 251, 521, 614, 686
AlwI GGATC 3 cut(s) 100, 278, 518
AoxI GGCC 3 cut(s) 108, 603, 667
ApeKI GCWGC 2 cut(s) 223, 488
AspLEI GCGC 2 cut(s) 168, 597
AspS9I GGNCC 3 cut(s) 108, 668, 690
AsuHPI GGTGA 3 cut(s) 132, 202, 401
AvaII GGWCC 1 cut(s) 690
BanI GGYRCC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 210, 475
BceAI ACGGC 1 cut(s) 61
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BciT130I CCWGG 1 cut(s) 599
BfaI CTAG 2 cut(s) 611, 736
BfmI CTRYAG 2 cut(s) 55, 726
BfoI RGCGCY 2 cut(s) 169, 598
BisI GCNGC 2 cut(s) 224, 489
BlsI GCNGC 2 cut(s) 225, 490
Bme1390I CCNGG 1 cut(s) 599
Bme18I GGWCC 1 cut(s) 690
BmeRI GACNNNNNGTC 1 cut(s) 38
BmgT120I GGNCC 3 cut(s) 108, 668, 690
BmiI GGNNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 599
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 2 cut(s) 70, 375
BmuI ACTGGG 1 cut(s) 115
BplI GAGNNNNNCTC 2 cut(s) 443, 475
BpmI CTGGAG 2 cut(s) 360, 620
BpuEI CTTGAG 1 cut(s) 521
BsaBI GATNNNNATC 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse118I RCCGGY 1 cut(s) 357
Bse1I ACTGG 3 cut(s) 110, 343, 430
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 1 cut(s) 599
BseGI GGATG 2 cut(s) 366, 576
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMII CTCAG 3 cut(s) 399, 606, 627
BseNI ACTGG 3 cut(s) 110, 343, 430
BseXI GCAGC 2 cut(s) 210, 475
BseYI CCCAGC 2 cut(s) 114, 326
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 3 cut(s) 110, 605, 669
BshNI GGYRCC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 448
BsnI GGCC 3 cut(s) 110, 605, 669
Bsp143I GATC 4 cut(s) 3, 92, 283, 523
BspANI GGCC 3 cut(s) 110, 605, 669
BspCNI CTCAG 3 cut(s) 398, 607, 628
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 167
BspPI GGATC 3 cut(s) 100, 278, 518
BspT107I GGYRCC 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 357
BsrI ACTGG 3 cut(s) 110, 343, 430
BssAI RCCGGY 1 cut(s) 357
BssMI GATC 4 cut(s) 3, 92, 283, 523
BssNI GRCGYC 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 599
Bst4CI ACNGT 3 cut(s) 11, 353, 403
Bst6I CTCTTC 1 cut(s) 642
BstACI GRCGYC 1 cut(s) 166
BstC8I GCNNGC 3 cut(s) 112, 359, 558
BstDEI CTNAG 3 cut(s) 385, 615, 636
BstENI CCTNNNNNAGG 1 cut(s) 446
BstF5I GGATG 2 cut(s) 366, 576
BstFNI CGCG 1 cut(s) 348
BstH2I RGCGCY 2 cut(s) 169, 598
BstHHI GCGC 2 cut(s) 168, 597
BstKTI GATC 4 cut(s) 6, 95, 286, 526
BstMBI GATC 4 cut(s) 3, 92, 283, 523
BstMWI GCNNNNNNNGC 4 cut(s) 354, 363, 497, 611
BstNI CCWGG 1 cut(s) 599
BstSCI CCNGG 1 cut(s) 597
BstSFI CTRYAG 2 cut(s) 55, 726
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 210, 475
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BsuRI GGCC 3 cut(s) 110, 605, 669
BtgZI GCGATG 1 cut(s) 307
BtsCI GGATG 2 cut(s) 366, 576
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 3 cut(s) 112, 359, 558
CfoI GCGC 2 cut(s) 168, 597
Cfr10I RCCGGY 1 cut(s) 357
Cfr13I GGNCC 3 cut(s) 108, 668, 690
CseI GACGC 2 cut(s) 227, 354
CviAII CATG 2 cut(s) 35, 505
DdeI CTNAG 3 cut(s) 385, 615, 636
DinI GGCGCC 1 cut(s) 167
DpnI GATC 4 cut(s) 5, 94, 285, 525
DpnII GATC 4 cut(s) 3, 92, 283, 523
DrdI GACNNNNNNGTC 1 cut(s) 351
DriI GACNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 642
Eam1105I GACNNNNNGTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 642
Eco147I AGGCCT 1 cut(s) 605
Eco47I GGWCC 1 cut(s) 690
Eco57I CTGAAG 2 cut(s) 112, 360
EcoNI CCTNNNNNAGG 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 668
EcoRII CCWGG 1 cut(s) 597
EgeI GGCGCC 1 cut(s) 167
EheI GGCGCC 1 cut(s) 167
FaeI CATG 2 cut(s) 38, 508
FaiI YATR 6 cut(s) 36, 234, 395, 465, 506, 531
FatI CATG 2 cut(s) 34, 504
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 224, 489
FokI GGATG 2 cut(s) 353, 583
Fsp4HI GCNGC 2 cut(s) 224, 489
FspBI CTAG 2 cut(s) 611, 736
GlaI GCGC 2 cut(s) 167, 596
GluI GCNGC 2 cut(s) 224, 489
GsaI CCCAGC 2 cut(s) 118, 330
GsuI CTGGAG 2 cut(s) 360, 620
HaeII RGCGCY 2 cut(s) 169, 598
HaeIII GGCC 3 cut(s) 110, 605, 669
HapII CCGG 1 cut(s) 358
HgaI GACGC 2 cut(s) 227, 354
HhaI GCGC 2 cut(s) 168, 597
Hin1I GRCGYC 1 cut(s) 166
Hin1II CATG 2 cut(s) 38, 508
Hin6I GCGC 2 cut(s) 166, 595
HinP1I GCGC 2 cut(s) 166, 595
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 249
HinfI GANTC 7 cut(s) 99, 263, 278, 318, 409, 563, 577
HpaII CCGG 1 cut(s) 358
HphI GGTGA 3 cut(s) 132, 202, 401
Hpy166II GTNNAC 3 cut(s) 32, 43, 336
Hpy188I TCNGA 3 cut(s) 283, 414, 690
Hpy188III TCNNGA 5 cut(s) 96, 370, 421, 581, 721
Hpy8I GTNNAC 3 cut(s) 32, 43, 336
Hpy99I CGWCG 3 cut(s) 11, 47, 243
HpyAV CCTTC 4 cut(s) 151, 502, 655, 659
HpyCH4III ACNGT 3 cut(s) 11, 353, 403
HpyCH4V TGCA 3 cut(s) 83, 435, 701
HpyF10VI GCNNNNNNNGC 4 cut(s) 354, 363, 497, 611
HpyF3I CTNAG 3 cut(s) 385, 615, 636
Hsp92I GRCGYC 1 cut(s) 166
Hsp92II CATG 2 cut(s) 38, 508
HspAI GCGC 2 cut(s) 166, 595
KasI GGCGCC 1 cut(s) 165
KroI GCCGGC 1 cut(s) 357
KroNI GCCGGC 1 cut(s) 359
Kzo9I GATC 4 cut(s) 3, 92, 283, 523
LmnI GCTCC 3 cut(s) 68, 177, 518
Lsp1109I GCAGC 2 cut(s) 210, 475
LweI GCATC 2 cut(s) 70, 375
MaeI CTAG 2 cut(s) 611, 736
MalI GATC 4 cut(s) 5, 94, 285, 525
MboI GATC 4 cut(s) 3, 92, 283, 523
MboII GAAGA 7 cut(s) 160, 163, 166, 287, 656, 659, 692
MflI RGATCY 1 cut(s) 92
MluCI AATT 2 cut(s) 86, 675
Mly113I GGCGCC 1 cut(s) 166
MlyI GAGTC 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 621
MnlI CCTC 7 cut(s) 335, 452, 466, 478, 545, 595, 616
MroNI GCCGGC 1 cut(s) 357
MseI TTAA 2 cut(s) 447, 620
MslI CAYNNNNRTG 1 cut(s) 462
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 1 cut(s) 599
MvaI CCWGG 1 cut(s) 599
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 4 cut(s) 354, 363, 497, 611
NaeI GCCGGC 1 cut(s) 359
NarI GGCGCC 1 cut(s) 166
NdeII GATC 4 cut(s) 3, 92, 283, 523
NgoMIV GCCGGC 1 cut(s) 357
NlaIII CATG 2 cut(s) 38, 508
NlaIV GGNNCC 1 cut(s) 167
PceI AGGCCT 1 cut(s) 605
PdiI GCCGGC 1 cut(s) 359
PfeI GAWTC 6 cut(s) 99, 263, 278, 409, 563, 577
PkrI GCNGC 2 cut(s) 225, 490
PleI GAGTC 1 cut(s) 312
PluTI GGCGCC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 597
PspFI CCCAGC 2 cut(s) 114, 326
PspGI CCWGG 1 cut(s) 597
PspN4I GGNNCC 1 cut(s) 167
PspPI GGNCC 3 cut(s) 108, 668, 690
PsuI RGATCY 1 cut(s) 92
RseI CAYNNNNRTG 1 cut(s) 462
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 447, 620
SatI GCNGC 2 cut(s) 224, 489
Sau3AI GATC 4 cut(s) 3, 92, 283, 523
Sau96I GGNCC 3 cut(s) 108, 668, 690
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 1 cut(s) 599
SfaNI GCATC 2 cut(s) 70, 375
SfcI CTRYAG 2 cut(s) 55, 726
SfoI GGCGCC 1 cut(s) 167
SinI GGWCC 1 cut(s) 690
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 2 cut(s) 86, 675
SseBI AGGCCT 1 cut(s) 605
SspDI GGCGCC 1 cut(s) 165
SspMI CTAG 2 cut(s) 611, 736
StuI AGGCCT 1 cut(s) 605
StyD4I CCNGG 1 cut(s) 597
TaaI ACNGT 3 cut(s) 11, 353, 403
TaqI TCGA 3 cut(s) 6, 42, 589
TasI AATT 2 cut(s) 86, 675
TfiI GAWTC 6 cut(s) 99, 263, 278, 409, 563, 577
Tru1I TTAA 2 cut(s) 447, 620
Tru9I TTAA 2 cut(s) 447, 620
TscAI CASTG 1 cut(s) 205
TseI GCWGC 2 cut(s) 223, 488
TspDTI ATGAA 2 cut(s) 219, 521
TspRI CASTG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 690
XagI CCTNNNNNAGG 1 cut(s) 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 2 cut(s) 611, 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.