Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Forward (+)

13879959 .. 13885736

Gene Structure 5778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G32730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3015 bp

ATGGCGACACCCATGGTTAGTTCCGCTGGAGGATTACTAGCAATGCTCAACGAGCCTCATCCTGTTTTGAAGCTTCATGCGCTCTCTAACCTCAACAATTTGGTTGACCAATTCTGGCCTGAGATCTCCACTAGTGTCCCCATCATTGAGAGTTTATATGAAGATGAAGAATTCGATCTGCATCAAAGACAGCTTGCTGCTTTGCTGGTCTCTAAGGTTTTCTATTACTTGGGCGAGCTTAATGATTCGCTGTCTTATGCCCTAGGAGCCGGTCCCTTATTTGATGTTTCAGAGGATTCTGATTATGTTCATACGCTTCTGGCCAAAGCAATAGACGAATATGCCAGTCTCAGATCAAAGGCAGTTGAGTCAAATGAGATGGTGGACATTGATCCCAGGCTAGAGGCGATTGTTGAAAGAATGCTTGGAAAATGCATCAGTGATGGGAAGTATCAACAAGCCATGGGCATTGCGATAGAATGCCGGAGATTGGATAAGTTGGAAGAAGCTATCATTAAGAGCGATAATGTTCAGGGAACTTTATCATATTGCATCAATGTTTCTCATTCCTTTGTCAACCGCAGAGAGTACAGACATGAGGTGCTTAGTTTACTTGTAAAAGTCTACCAGAAGCTGCCCTCTCCTGATTATTTGAGCATTTGTCAATGCCTCATGTTTTTGGATGAACCGCAAGGTGTTGCAAGCATATTGGAGAAGCTTCTTCGCTCAGAGAACAAGGATGATGCTTTATTGGCATTGCAAATTGCATTTGATCTTGTAGAGAACGAGCACCAGGCCTTTCTCTTGAGTGTTAGAGATCGCCTTCCAGCTCCCAAAACACGTGCTGTAGAAGCAACTCAGGCTGTTGAAACAACTATTGCTCCTAATGAGAACCCTTCGGGAGATGTTCAGATGGCAGATGAAACTCCAGCTCAGACAATTGTGCATGAGACGGATCCAGTTGATGCTACATATGCTGAGAGGTTAACAAAGATTAAGGGAATTTTATCTGGAGAGACATCTATTCAGCTGACACTGCAGTTTCTTTACAGCCACAACAAATCGGACCTGCTGATACTGAAGACAATCAAACAGTCTGTAGAGATGCGGAACAGTGTATGCCACAGTGCTACAATATATGCTAATGCCATTATGCATGCTGGAACTACAGTGGACACTTTCCTTAGAGAGAATTTGGATTGGCTAAGCAGGGCAACCAATTGGGCTAAGTTCAGTGCTACCGCGGGATTAGGTGTTATTCACAGAGGTCACCTGCAACAGGGTAGGTCATTGATGGCTCCATACTTGCCTCAGGGAGGAGCAGGTGGTGGTGGGAGTCCTTATTCCGAAGGAGGTGCTTTATATGCTCTTGGCCTTATTCATGCTAACCATGGCGAGGGAATCAAGCAATTTCTACGTGATAGCCTACGCAGCACTAATGTTGAGGTCATTCAACATGGAGCTTGTTTAGGTCTTGGCTTGTCAGCTCTCGGGACAGCTGATGAAGAGATATATGATGATGTCAAAAGCGTGCTTTATACTGACAGTGCAGTTGCTGGTGAAGCTGCTGGCATCAGCATGGGTTTATTATTGGTTGGAACTGCTACTGAAAAGGCAAGTGAGATGCTCGCTTATGCTCATGAGACACAACATGAGAAGATAATAAGGGGATTGGCTCTAGGAATAGCTCTTACAGTATATGGTAGAGAAGAAGGAGCAGATACCTTGATTGAGCAGATGACGAGAGATCAGGATCCAATCATTCGTTATGGTGGCATGTACGCATTGGCATTGGCTTACAGTGGAACCGCAAACAACAAGGCAATTCGACAATTGCTGCACTTTGCTGTATCTGATGTCAGTGATGATGTTAGGAGGACTGCCGTTCTGGCACTTGGATTTGTCTTGTACTCTGATCCAGAGCAGACTCCCCGTATTGTATCACTGCTTTCTGAGTCATACAATCCACATGTTCGCTATGGTGCGGCTCTTGCAGTGGGTATTTCTTGTGCAGGCACTGGCCTCAGCGAAGCGATATCCTTGTTGGAGCCACTTACATCAGATGTTGTTGACTTTGTTCGTCAAGGTGCTTTGATTGCAATGGCCATGGTGATGGTTCAAATTAGCGAAGCTAGCGATTCTCGTGTTGGAGTATTTAGGCGCCAACTTGAGAAGATTATACTTGACAAGCACGAAGATACAATGAGCAAGATGGGAGCGATTCTGGCCTCTGGTATCCTTGATGCTGGTGGTAGGAACGTTACTATAAGACTGCTCTCTAAGACCAAACATGACAAAGTCACTGCTGTTATCGGCCTTGCAGTCTTCAGCCAGTTTTGGTATTGGTACCCACTGATCTATTTCATTAGTTTGGCCTTCTCACCAACCGCTTTCATCGGTTTGAACTATGACCTTAAGGTCCCAAAGTTTGAGTTCATGTCACATGCAAAACCGTCTTTATTTGAGTACCCAAAACCCACCACGGTTCCTACAGCCAATACCGCCGTTAAACTTCCAACCGCTGTTCTCTCAACTTCAGTTAAAGCCAAAGCTAGGGCTAAGAAAGAAGCAGAGCAAAAAGCTATTGCTGAGAAAACATCTGGCCCTGAAAAGCCTGTCAATGAAAGTGGATCTGGAAAAGGAAAAGCATCAACTGAGAAGGAAGGAGACTCTATGCAGGTCGATAGCCCAGCAGCGGTCGAGAAGAAAGCACCTGAGCCTGAGCCAGCGTTTGAGATTTTAGTGAACCCAGCTCGAGTAGTCCCAGCTCAAGAGAAATACATAAAGTTACTTGATGACAGCAGATATGTACCAGTGAAGCTAGCACCGTCAGGTTTCGTTCTTCTCAAAGACTTGCGTGAACACGAGCCAGAGGTTCTCTCTCTGACCGACGCACCAACTTCAACAGCTTCTCCTGCAACTGGTACAGCAGCGGCTGCACAAGGAACCCCGGCCTCAGCTATGGCCGTAGATGATGAGCCACAACCTCCACAAGCCTTTGAATACGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

1004

Amino Acids

108.98

Weight (kDa)

5.23

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN2_N	PF21505	8 - 353	1.2e-90	26S proteasome subunit RPN2, N-terminal domain
HEAT_2	PF13646	610 - 702	8.7e-12	HEAT repeats
PC_rep	PF01851	661 - 694	2.8e-06	Proteasome/cyclosome repeat
RPN2_C	PF18004	796 - 959	1.7e-45	26S proteasome regulatory subunit RPN2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1281, 1313
AasI	GACNNNNNNGTC	1 cut(s)	2417
Acc36I	ACCTGC	4 cut(s)	1077, 1281, 1313, 2668
Acc65I	GGTACC	1 cut(s)	2346
AccB1I	GGYRCC	2 cut(s)	2160, 2346
AccI	GTMKAC	1 cut(s)	624
AccII	CGCG	1 cut(s)	1244
AclI	AACGTT	1 cut(s)	2259
AclWI	GGATC	7 cut(s)	386, 950, 963, 1748, 1761, 1910, 2638
AcoI	YGGCCR	3 cut(s)	321, 2103, 2964
AcsI	RAATTY	3 cut(s)	170, 1002, 1192
AcuI	CTGAAG	3 cut(s)	1100, 2311, 2520
AcvI	CACGTG	1 cut(s)	842
AcyI	GRCGYC	1 cut(s)	2161
AfaI	GTAC	7 cut(s)	590, 1781, 1910, 2348, 2468, 2811, 2926
AfiI	CCNNNNNNNGG	7 cut(s)	490, 1279, 1316, 1396, 2553, 2695, 2921
AflII	CTTAAG	1 cut(s)	2414
AflIII	ACRYGT	2 cut(s)	839, 1969
AgsI	TTSAA	8 cut(s)	70, 416, 869, 1454, 2120, 2404, 2904, 3002
AhlI	ACTAGT	1 cut(s)	131
AjnI	CCWGG	2 cut(s)	395, 792
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
Alw21I	GWGCWC	1 cut(s)	792
Alw26I	GTCTC	6 cut(s)	214, 353, 944, 1010, 1637, 2661
AlwI	GGATC	7 cut(s)	386, 950, 963, 1748, 1761, 1910, 2638
AlwNI	CAGNNNCTG	4 cut(s)	634, 1556, 2018, 2936
Ama87I	CYCGRG	2 cut(s)	1490, 2754
ApeKI	GCWGC	8 cut(s)	197, 634, 1431, 1565, 1837, 2693, 2930, 2936
ApoI	RAATTY	3 cut(s)	170, 1002, 1192
Asp718I	GGTACC	1 cut(s)	2346
AspA2I	CCTAGG	1 cut(s)	262
AspLEI	GCGC	2 cut(s)	82, 2163
AspS9I	GGNCC	4 cut(s)	272, 1066, 2419, 2603
AsuC2I	CCSGG	1 cut(s)	2951
AsuHPI	GGTGA	4 cut(s)	1262, 1571, 2122, 2373
AsuNHI	GCTAGC	2 cut(s)	2132, 2821
AvaI	CYCGRG	2 cut(s)	1490, 2754
AvaII	GGWCC	3 cut(s)	272, 1066, 2419
AvrII	CCTAGG	1 cut(s)	262
AxyI	CCTNAGG	1 cut(s)	1311
BalI	TGGCCA	2 cut(s)	323, 2105
BamHI	GGATCC	2 cut(s)	955, 1753
BanI	GGYRCC	2 cut(s)	2160, 2346
BauI	CACGAG	2 cut(s)	2142, 2864
BbrPI	CACGTG	1 cut(s)	842
BbsI	GAAGAC	2 cut(s)	1088, 2317
Bbv12I	GWGCWC	1 cut(s)	792
BbvCI	CCTCAGC	2 cut(s)	2024, 2956
BbvI	GCAGC	8 cut(s)	184, 621, 1443, 1552, 1824, 2705, 2923, 2942
BccI	CCATC	7 cut(s)	149, 373, 437, 907, 1288, 2107, 2206
BceAI	ACGGC	3 cut(s)	1868, 2489, 2951
BcgI	CGANNNNNNTGC	2 cut(s)	1337, 1371
BciT130I	CCWGG	2 cut(s)	397, 794
BciVI	GTATCC	1 cut(s)	2246
BcnI	CCSGG	1 cut(s)	2951
BcoDI	GTCTC	6 cut(s)	214, 353, 944, 1010, 1637, 2661
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	8 cut(s)	38, 132, 263, 401, 1679, 2133, 2553, 2822
BfmI	CTRYAG	5 cut(s)	846, 1037, 1098, 1167, 2490
BfoI	RGCGCY	1 cut(s)	2164
BfrI	CTTAAG	1 cut(s)	2414
BfuAI	ACCTGC	4 cut(s)	1077, 1281, 1313, 2668
BfuI	GTATCC	1 cut(s)	2246
BglI	GCCNNNNNGGC	1 cut(s)	1889
BglII	AGATCT	1 cut(s)	123
BlnI	CCTAGG	1 cut(s)	262
BlpI	GCTNAGC	1 cut(s)	1205
Bme1390I	CCNGG	3 cut(s)	397, 794, 2951
Bme18I	GGWCC	3 cut(s)	272, 1066, 2419
BmeT110I	CYCGRG	2 cut(s)	1490, 2754
BmgT120I	GGNCC	4 cut(s)	272, 1066, 2419, 2603
BmrFI	CCNGG	3 cut(s)	397, 794, 2951
BmtI	GCTAGC	2 cut(s)	2136, 2825
BpiI	GAAGAC	2 cut(s)	1088, 2317
BplI	GAGNNNNNCTC	2 cut(s)	2864, 2896
BpmI	CTGGAG	3 cut(s)	48, 912, 1032
Bpu10I	CCTNAGC	4 cut(s)	2024, 2715, 2721, 2956
Bpu1102I	GCTNAGC	1 cut(s)	1205
BpuEI	CTTGAG	3 cut(s)	826, 2189, 2754
BpuMI	CCSGG	1 cut(s)	2951
BsaAI	YACGTR	2 cut(s)	842, 1418
BsaBI	GATNNNNATC	2 cut(s)	180, 1752
BsaHI	GRCGYC	1 cut(s)	2161
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	9 cut(s)	12, 262, 395, 462, 1242, 1390, 2106, 2481, 2949
BsaXI	ACNNNNNCTCC	4 cut(s)	865, 895, 2896, 2926
Bsc4I	CCNNNNNNNGG	7 cut(s)	490, 1279, 1316, 1396, 2553, 2695, 2921
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	6 cut(s)	345, 959, 2023, 2332, 2813, 2926
Bse21I	CCTNAGG	1 cut(s)	1311
Bse3DI	GCAATG	4 cut(s)	48, 468, 755, 2106
Bse8I	GATNNNNATC	2 cut(s)	180, 1752
BseBI	CCWGG	2 cut(s)	397, 794
BseDI	CCNNGG	9 cut(s)	12, 262, 395, 462, 1242, 1390, 2106, 2481, 2949
BseGI	GGATG	3 cut(s)	58, 688, 745
BseJI	GATNNNNATC	2 cut(s)	180, 1752
BseLI	CCNNNNNNNGG	7 cut(s)	490, 1279, 1316, 1396, 2553, 2695, 2921
BseMI	GCAATG	4 cut(s)	48, 468, 755, 2106
BseNI	ACTGG	6 cut(s)	345, 959, 2023, 2332, 2813, 2926
BseRI	GAGGAG	1 cut(s)	1332
BseXI	GCAGC	8 cut(s)	184, 621, 1443, 1552, 1824, 2705, 2923, 2942
BseYI	CCCAGC	3 cut(s)	2689, 2749, 2764
BsgI	GTGCAG	4 cut(s)	1569, 1823, 2031, 2922
Bsh1236I	CGCG	1 cut(s)	1244
Bsh1285I	CGRYCG	1 cut(s)	2700
BshNI	GGYRCC	2 cut(s)	2160, 2346
BsiEI	CGRYCG	1 cut(s)	2700
BsiHKAI	GWGCWC	1 cut(s)	792
BsiHKCI	CYCGRG	2 cut(s)	1490, 2754
BsiSI	CCGG	3 cut(s)	270, 484, 2951
BslFI	GGGAC	5 cut(s)	122, 258, 1507, 2405, 2747
BslI	CCNNNNNNNGG	7 cut(s)	490, 1279, 1316, 1396, 2553, 2695, 2921
BsmAI	GTCTC	6 cut(s)	214, 353, 944, 1010, 1637, 2661
BsmBI	CGTCTC	1 cut(s)	944
BsmFI	GGGAC	5 cut(s)	122, 258, 1507, 2405, 2747
BsmI	GAATGC	2 cut(s)	426, 485
Bso31I	GGTCTC	1 cut(s)	214
BsoBI	CYCGRG	2 cut(s)	1490, 2754
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp1720I	GCTNAGC	1 cut(s)	1205
Bsp19I	CCATGG	4 cut(s)	12, 462, 1390, 2106
BspFNI	CGCG	1 cut(s)	1244
BspHI	TCATGA	2 cut(s)	1639, 3011
BspMAI	CTGCAG	1 cut(s)	1041
BspMI	ACCTGC	4 cut(s)	1077, 1281, 1313, 2668
BspOI	GCTAGC	2 cut(s)	2136, 2825
BspPI	GGATC	7 cut(s)	386, 950, 963, 1748, 1761, 1910, 2638
BspT107I	GGYRCC	2 cut(s)	2160, 2346
BspTI	CTTAAG	1 cut(s)	2414
BspTNI	GGTCTC	1 cut(s)	214
BsrDI	GCAATG	4 cut(s)	48, 468, 755, 2106
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	6 cut(s)	345, 959, 2023, 2332, 2813, 2926
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	9 cut(s)	12, 262, 395, 462, 1242, 1390, 2106, 2481, 2949
BssNI	GRCGYC	1 cut(s)	2161
BssSI	CACGAG	2 cut(s)	2142, 2864
BssT1I	CCWWGG	5 cut(s)	12, 262, 462, 1390, 2106
Bst2BI	CACGAG	2 cut(s)	2142, 2864
Bst2UI	CCWGG	2 cut(s)	397, 794
Bst6I	CTCTTC	1 cut(s)	1500
BstACI	GRCGYC	1 cut(s)	2161
BstAFI	CTTAAG	1 cut(s)	2414
BstAPI	GCANNNNNTGC	1 cut(s)	2936
BstBAI	YACGTR	2 cut(s)	842, 1418
BstDSI	CCRYGG	6 cut(s)	12, 462, 1242, 1390, 2106, 2481
BstEII	GGTNACC	1 cut(s)	1268
BstENI	CCTNNNNNAGG	2 cut(s)	1277, 1314
BstF5I	GGATG	3 cut(s)	58, 688, 745
BstFNI	CGCG	1 cut(s)	1244
BstH2I	RGCGCY	1 cut(s)	2164
BstHHI	GCGC	2 cut(s)	82, 2163
BstMAI	GTCTC	6 cut(s)	214, 353, 944, 1010, 1637, 2661
BstMCI	CGRYCG	1 cut(s)	2700
BstNI	CCWGG	2 cut(s)	397, 794
BstNSI	RCATGY	4 cut(s)	1160, 1780, 1973, 2447
BstPI	GGTNACC	1 cut(s)	1268
BstSCI	CCNGG	3 cut(s)	395, 792, 2949
BstSFI	CTRYAG	5 cut(s)	846, 1037, 1098, 1167, 2490
BstUI	CGCG	1 cut(s)	1244
BstV1I	GCAGC	8 cut(s)	184, 621, 1443, 1552, 1824, 2705, 2923, 2942
BstV2I	GAAGAC	2 cut(s)	1088, 2317
BstX2I	RGATCY	4 cut(s)	123, 955, 1753, 2630
BstXI	CCANNNNNNTGG	1 cut(s)	2113
BstYI	RGATCY	4 cut(s)	123, 955, 1753, 2630
Bsu36I	CCTNAGG	1 cut(s)	1311
BsuI	GTATCC	1 cut(s)	2246
BtgI	CCRYGG	6 cut(s)	12, 462, 1242, 1390, 2106, 2481
BtsCI	GGATG	3 cut(s)	58, 688, 745
BtsI	GCAGTG	4 cut(s)	1034, 1943, 2001, 2301
BveI	ACCTGC	4 cut(s)	1077, 1281, 1313, 2668
CaiI	CAGNNNCTG	4 cut(s)	634, 1556, 2018, 2936
CciI	TCATGA	2 cut(s)	1639, 3011
CfoI	GCGC	2 cut(s)	82, 2163
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	4 cut(s)	272, 1066, 2419, 2603
Cfr42I	CCGCGG	1 cut(s)	1245
CseI	GACGC	1 cut(s)	2900
Csp6I	GTAC	7 cut(s)	589, 1780, 1909, 2347, 2467, 2810, 2925
CspCI	CAANNNNNGTGG	2 cut(s)	2608, 2643
CviQI	GTAC	7 cut(s)	589, 1780, 1909, 2347, 2467, 2810, 2925
DinI	GGCGCC	1 cut(s)	2162
DrdI	GACNNNNNNGTC	1 cut(s)	2417
DseDI	GACNNNNNNGTC	1 cut(s)	2417
EaeI	YGGCCR	3 cut(s)	321, 2103, 2964
Eam1104I	CTCTTC	1 cut(s)	1500
EarI	CTCTTC	1 cut(s)	1500
Eco130I	CCWWGG	5 cut(s)	12, 262, 462, 1390, 2106
Eco147I	AGGCCT	1 cut(s)	797
Eco31I	GGTCTC	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	2037
Eco47I	GGWCC	3 cut(s)	272, 1066, 2419
Eco57I	CTGAAG	3 cut(s)	1100, 2311, 2520
Eco72I	CACGTG	1 cut(s)	842
Eco81I	CCTNAGG	1 cut(s)	1311
Eco88I	CYCGRG	2 cut(s)	1490, 2754
Eco91I	GGTNACC	1 cut(s)	1268
EcoNI	CCTNNNNNAGG	2 cut(s)	1277, 1314
EcoO109I	RGGNCCY	1 cut(s)	2419
EcoO65I	GGTNACC	1 cut(s)	1268
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	395, 792
EcoRV	GATATC	1 cut(s)	2037
EcoT14I	CCWWGG	5 cut(s)	12, 262, 462, 1390, 2106
EcoT22I	ATGCAT	2 cut(s)	437, 1158
EgeI	GGCGCC	1 cut(s)	2162
EheI	GGCGCC	1 cut(s)	2162
ErhI	CCWWGG	5 cut(s)	12, 262, 462, 1390, 2106
Esp3I	CGTCTC	1 cut(s)	944
FaqI	GGGAC	5 cut(s)	122, 258, 1507, 2405, 2747
FauI	CCCGC	1 cut(s)	1237
FauNDI	CATATG	1 cut(s)	973
FblI	GTMKAC	1 cut(s)	624
FokI	GGATG	3 cut(s)	45, 695, 752
FspBI	CTAG	8 cut(s)	38, 132, 263, 401, 1679, 2133, 2553, 2822
GlaI	GCGC	2 cut(s)	81, 2162
GsaI	CCCAGC	3 cut(s)	2693, 2753, 2768
GsuI	CTGGAG	3 cut(s)	48, 912, 1032
HaeII	RGCGCY	1 cut(s)	2164
HapII	CCGG	3 cut(s)	270, 484, 2951
HgaI	GACGC	1 cut(s)	2900
HhaI	GCGC	2 cut(s)	82, 2163
Hin1I	GRCGYC	1 cut(s)	2161
Hin6I	GCGC	2 cut(s)	80, 2161
HinP1I	GCGC	2 cut(s)	80, 2161
HincII	GTYRAC	4 cut(s)	106, 577, 987, 2071
HindII	GTYRAC	4 cut(s)	106, 577, 987, 2071
HindIII	AAGCTT	2 cut(s)	71, 716
HpaI	GTTAAC	1 cut(s)	987
HpaII	CCGG	3 cut(s)	270, 484, 2951
HphI	GGTGA	4 cut(s)	1262, 1571, 2122, 2373
Hpy99I	CGWCG	1 cut(s)	2894
HpyAV	CCTTC	7 cut(s)	833, 906, 1343, 1706, 2386, 2653, 2657
HpyCH4IV	ACGT	3 cut(s)	841, 1417, 2259
HpySE526I	ACGT	3 cut(s)	841, 1417, 2259
Hsp92I	GRCGYC	1 cut(s)	2161
HspAI	GCGC	2 cut(s)	80, 2161
KasI	GGCGCC	1 cut(s)	2160
KpnI	GGTACC	1 cut(s)	2350
KspAI	GTTAAC	1 cut(s)	987
KspI	CCGCGG	1 cut(s)	1245
LmnI	GCTCC	9 cut(s)	266, 835, 886, 1303, 1319, 1460, 1715, 2047, 2216
Lsp1109I	GCAGC	8 cut(s)	184, 621, 1443, 1552, 1824, 2705, 2923, 2942
MaeI	CTAG	8 cut(s)	38, 132, 263, 401, 1679, 2133, 2553, 2822
MaeII	ACGT	3 cut(s)	841, 1417, 2259
MaeIII	GTNAC	5 cut(s)	1268, 2260, 2299, 2439, 2787
MfeI	CAATTG	3 cut(s)	939, 1219, 1832
MflI	RGATCY	4 cut(s)	123, 955, 1753, 2630
MhlI	GDGCHC	1 cut(s)	792
MlsI	TGGCCA	2 cut(s)	323, 2105
MluNI	TGGCCA	2 cut(s)	323, 2105
Mly113I	GGCGCC	1 cut(s)	2161
MlyI	GAGTC	5 cut(s)	377, 1345, 1921, 1964, 2663
MmeI	TCCRAC	5 cut(s)	480, 1576, 2025, 2128, 2540
Mox20I	TGGCCA	2 cut(s)	323, 2105
Mph1103I	ATGCAT	2 cut(s)	437, 1158
MscI	TGGCCA	2 cut(s)	323, 2105
MseI	TTAA	7 cut(s)	240, 516, 986, 996, 2415, 2508, 2541
MslI	CAYNNNNRTG	2 cut(s)	1577, 2111
Msp20I	TGGCCA	2 cut(s)	323, 2105
MspA1I	CMGCKG	7 cut(s)	26, 1030, 1244, 1499, 2522, 2696, 2933
MspCI	CTTAAG	1 cut(s)	2414
MspI	CCGG	3 cut(s)	270, 484, 2951
MspR9I	CCNGG	3 cut(s)	397, 794, 2951
MunI	CAATTG	3 cut(s)	939, 1219, 1832
Mva1269I	GAATGC	2 cut(s)	426, 485
MvaI	CCWGG	2 cut(s)	397, 794
MvnI	CGCG	1 cut(s)	1244
NarI	GGCGCC	1 cut(s)	2161
NciI	CCSGG	1 cut(s)	2951
NcoI	CCATGG	4 cut(s)	12, 462, 1390, 2106
NdeI	CATATG	1 cut(s)	973
NheI	GCTAGC	2 cut(s)	2132, 2821
NmuCI	GTSAC	3 cut(s)	1268, 2299, 2439
NsiI	ATGCAT	2 cut(s)	437, 1158
NspI	RCATGY	4 cut(s)	1160, 1780, 1973, 2447
PaeI	GCATGC	1 cut(s)	1160
PaeR7I	CTCGAG	1 cut(s)	2754
PagI	TCATGA	2 cut(s)	1639, 3011
PaqCI	CACCTGC	2 cut(s)	1281, 1313
PceI	AGGCCT	1 cut(s)	797
PciI	ACATGT	1 cut(s)	1969
PctI	GAATGC	2 cut(s)	426, 485
PfeI	GAWTC	5 cut(s)	245, 296, 1401, 2138, 2221
PflFI	GACNNNGTC	1 cut(s)	2297
PleI	GAGTC	5 cut(s)	376, 1344, 1921, 1963, 2663
PluTI	GGCGCC	1 cut(s)	2164
PmaCI	CACGTG	1 cut(s)	842
PmlI	CACGTG	1 cut(s)	842
PpsI	GAGTC	5 cut(s)	376, 1344, 1921, 1963, 2663
Ppu21I	YACGTR	2 cut(s)	842, 1418
PpuMI	RGGWCCY	1 cut(s)	2419
PscI	ACATGT	1 cut(s)	1969
Psp1406I	AACGTT	1 cut(s)	2259
Psp5II	RGGWCCY	1 cut(s)	2419
Psp6I	CCWGG	2 cut(s)	395, 792
PspCI	CACGTG	1 cut(s)	842
PspEI	GGTNACC	1 cut(s)	1268
PspFI	CCCAGC	3 cut(s)	2689, 2749, 2764
PspGI	CCWGG	2 cut(s)	395, 792
PspPI	GGNCC	4 cut(s)	272, 1066, 2419, 2603
PspPPI	RGGWCCY	1 cut(s)	2419
PspXI	VCTCGAGB	1 cut(s)	2754
PstI	CTGCAG	1 cut(s)	1041
PstNI	CAGNNNCTG	4 cut(s)	634, 1556, 2018, 2936
PsuI	RGATCY	4 cut(s)	123, 955, 1753, 2630
PsyI	GACNNNGTC	1 cut(s)	2297
PvuII	CAGCTG	2 cut(s)	1030, 1499
RsaI	GTAC	7 cut(s)	590, 1781, 1910, 2348, 2468, 2811, 2926
RsaNI	GTAC	7 cut(s)	589, 1780, 1909, 2347, 2467, 2810, 2925
RseI	CAYNNNNRTG	2 cut(s)	1577, 2111
SacII	CCGCGG	1 cut(s)	1245
SaqAI	TTAA	7 cut(s)	240, 516, 986, 996, 2415, 2508, 2541
Sau96I	GGNCC	4 cut(s)	272, 1066, 2419, 2603
SchI	GAGTC	5 cut(s)	377, 1345, 1921, 1964, 2663
ScrFI	CCNGG	3 cut(s)	397, 794, 2951
SduI	GDGCHC	1 cut(s)	792
SfcI	CTRYAG	5 cut(s)	846, 1037, 1098, 1167, 2490
SfoI	GGCGCC	1 cut(s)	2162
Sfr274I	CTCGAG	1 cut(s)	2754
Sfr303I	CCGCGG	1 cut(s)	1245
SgrBI	CCGCGG	1 cut(s)	1245
SinI	GGWCC	3 cut(s)	272, 1066, 2419
SlaI	CTCGAG	1 cut(s)	2754
SmiMI	CAYNNNNRTG	2 cut(s)	1577, 2111
SmlI	CTYRAG	5 cut(s)	805, 2168, 2414, 2754, 2769
SmoI	CTYRAG	5 cut(s)	805, 2168, 2414, 2754, 2769
SpeI	ACTAGT	1 cut(s)	131
SphI	GCATGC	1 cut(s)	1160
SseBI	AGGCCT	1 cut(s)	797
SspDI	GGCGCC	1 cut(s)	2160
SspMI	CTAG	8 cut(s)	38, 132, 263, 401, 1679, 2133, 2553, 2822
StuI	AGGCCT	1 cut(s)	797
StyD4I	CCNGG	3 cut(s)	395, 792, 2949
StyI	CCWWGG	5 cut(s)	12, 262, 462, 1390, 2106
TaiI	ACGT	3 cut(s)	844, 1420, 2262
TaqI	TCGA	5 cut(s)	174, 1828, 2682, 2700, 2755
TaqII	GACCGA	1 cut(s)	2903
TatI	WGTACW	2 cut(s)	588, 1908
TauI	GCSGC	2 cut(s)	1988, 2936
TfiI	GAWTC	5 cut(s)	245, 296, 1401, 2138, 2221
Tru1I	TTAA	7 cut(s)	240, 516, 986, 996, 2415, 2508, 2541
Tru9I	TTAA	7 cut(s)	240, 516, 986, 996, 2415, 2508, 2541
TseFI	GTSAC	3 cut(s)	1268, 2299, 2439
TseI	GCWGC	8 cut(s)	197, 634, 1431, 1565, 1837, 2693, 2930, 2936
Tsp45I	GTSAC	3 cut(s)	1268, 2299, 2439
TspGWI	ACGGA	1 cut(s)	968
Tth111I	GACNNNGTC	1 cut(s)	2297
Vha464I	CTTAAG	1 cut(s)	2414
VpaK11BI	GGWCC	3 cut(s)	272, 1066, 2419
XagI	CCTNNNNNAGG	2 cut(s)	1277, 1314
XapI	RAATTY	3 cut(s)	170, 1002, 1192
XceI	RCATGY	4 cut(s)	1160, 1780, 1973, 2447
XhoI	CTCGAG	1 cut(s)	2754
XmaJI	CCTAGG	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	8 cut(s)	38, 132, 263, 401, 1679, 2133, 2553, 2822
Zsp2I	ATGCAT	2 cut(s)	437, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.