Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Reverse (-)

26318649 .. 26319511

Gene Structure 863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24138

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTATGCATTGGGATTGGCGTACAAGGGAACATCAAACAATAAAGTGATTCAGCAGTTGCTTCATTTTGCCGTGTCAGATGTCAGTGATGATGTTAGAAGAACTGATGTACTAGCACTCGGCTTTGTCATGTACTCCGAGCCAGAGACCCCTGACATTGTCTCCATGCTTTCTGTATCGTATAATCCACATGTTAGATATGGCGCTGCTCTTGCAGTAGGCATTTCCTGCGCTGGTACAGGCTTGAGTGAGGCCATATCTTTGTTAGAGCCATTAACTTTGGATTCAGATGATTTTGTACGCCAAGGTGCACTGATTGCATCGGCCATGGTCATGGTCCAGATCAGTGAAGCTAGTGATTCTCGTGTAGGATCATTCAGGCGGTTTTTGGAGCGAATATTCTCAGACAAGCGGGAGAAGAGACAAACACAAATGGGGGCAATCCTGGCTGCCGGAATACTTAATTCTGGTGGCAGGAATGTCACCATAAAACTTGTGTCTGAGACGAAACATGACAGAGTCTGTGCTGTTGTTGGCCCACCCAGTATTGGTACTGGCACCCGCTCATATACTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

HEAT_2 PC_rep

Protein Analysis

192

Amino Acids

20.68

Weight (kDa)

6.83

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_2	PF13646	18 - 107	9.6e-09	HEAT repeats
PC_rep	PF01851	68 - 102	7.7e-08	Proteasome/cyclosome repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	557
AccBSI	CCGCTC	1 cut(s)	564
AciI	CCGC	3 cut(s)	382, 412, 562
AclWI	GGATC	1 cut(s)	379
AcoI	YGGCCR	1 cut(s)	324
AfaI	GTAC	6 cut(s)	23, 111, 134, 238, 300, 553
AfiI	CCNNNNNNNGG	1 cut(s)	548
AflIII	ACRYGT	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	4 cut(s)	140, 166, 415, 497
Alw44I	GTGCAC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	379
AlwNI	CAGNNNCTG	1 cut(s)	522
AoxI	GGCC	3 cut(s)	252, 324, 535
ApaLI	GTGCAC	1 cut(s)	309
ApeKI	GCWGC	2 cut(s)	206, 449
AspLEI	GCGC	2 cut(s)	206, 233
AspS9I	GGNCC	2 cut(s)	337, 536
AsuHPI	GGTGA	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	313
BanI	GGYRCC	1 cut(s)	557
BauI	CACGAG	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	2 cut(s)	193, 436
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	446
BcoDI	GTCTC	4 cut(s)	140, 166, 415, 497
BfaI	CTAG	2 cut(s)	113, 354
BfoI	RGCGCY	1 cut(s)	207
BisI	GCNGC	2 cut(s)	207, 450
BlsI	GCNGC	2 cut(s)	208, 451
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	2 cut(s)	337, 536
BmiI	GGNNCC	1 cut(s)	559
BmrFI	CCNGG	1 cut(s)	446
BmrI	ACTGGG	1 cut(s)	537
BmsI	GCATC	1 cut(s)	329
BmuI	ACTGGG	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	304, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
Bse1I	ACTGG	2 cut(s)	543, 559
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	2 cut(s)	304, 327
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMII	CTCAG	2 cut(s)	417, 492
BseNI	ACTGG	2 cut(s)	543, 559
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	193, 436
BshFI	GGCC	3 cut(s)	254, 326, 537
BshNI	GGYRCC	1 cut(s)	557
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmAI	GTCTC	4 cut(s)	140, 166, 415, 497
BsmBI	CGTCTC	1 cut(s)	497
BsnI	GGCC	3 cut(s)	254, 326, 537
Bso31I	GGTCTC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	342, 371
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	3 cut(s)	382, 412, 562
BspANI	GGCC	3 cut(s)	254, 326, 537
BspCNI	CTCAG	2 cut(s)	416, 493
BspLI	GGNNCC	1 cut(s)	559
BspPI	GGATC	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	543, 559
BssECI	CCNNGG	2 cut(s)	304, 327
BssMI	GATC	2 cut(s)	342, 371
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	2 cut(s)	304, 327
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	413
BstAPI	GCANNNNNTGC	2 cut(s)	228, 317
BstDEI	CTNAG	2 cut(s)	403, 501
BstDSI	CCRYGG	1 cut(s)	327
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	2 cut(s)	206, 233
BstKTI	GATC	2 cut(s)	345, 374
BstMAI	GTCTC	4 cut(s)	140, 166, 415, 497
BstMBI	GATC	2 cut(s)	342, 371
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 228, 317, 446
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	444
BstSLI	GKGCMC	1 cut(s)	313
BstV1I	GCAGC	2 cut(s)	193, 436
BstXI	CCANNNNNNTGG	1 cut(s)	334
BsuRI	GGCC	3 cut(s)	254, 326, 537
BtgI	CCRYGG	1 cut(s)	327
BtsIMutI	CAGTG	3 cut(s)	91, 311, 352
CaiI	CAGNNNCTG	1 cut(s)	522
CfoI	GCGC	2 cut(s)	206, 233
Cfr13I	GGNCC	2 cut(s)	337, 536
Csp6I	GTAC	6 cut(s)	22, 110, 133, 237, 299, 552
CviAII	CATG	6 cut(s)	130, 166, 191, 328, 334, 512
CviJI	RGCY	9 cut(s)	123, 142, 243, 254, 271, 326, 353, 449, 537
CviKI_1	RGCY	9 cut(s)	123, 142, 243, 254, 271, 326, 353, 449, 537
CviQI	GTAC	6 cut(s)	22, 110, 133, 237, 299, 552
DdeI	CTNAG	2 cut(s)	403, 501
DpnI	GATC	2 cut(s)	344, 373
DpnII	GATC	2 cut(s)	342, 371
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco130I	CCWWGG	2 cut(s)	304, 327
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	2 cut(s)	304, 327
EcoT22I	ATGCAT	1 cut(s)	10
ErhI	CCWWGG	2 cut(s)	304, 327
Esp3I	CGTCTC	1 cut(s)	497
FaeI	CATG	6 cut(s)	133, 169, 194, 331, 337, 515
FatI	CATG	6 cut(s)	129, 165, 190, 327, 333, 511
FauI	CCCGC	2 cut(s)	405, 569
Fnu4HI	GCNGC	2 cut(s)	207, 450
Fsp4HI	GCNGC	2 cut(s)	207, 450
FspBI	CTAG	2 cut(s)	113, 354
GlaI	GCGC	2 cut(s)	205, 232
GluI	GCNGC	2 cut(s)	207, 450
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	254, 326, 537
HapII	CCGG	1 cut(s)	453
HhaI	GCGC	2 cut(s)	206, 233
Hin1II	CATG	6 cut(s)	133, 169, 194, 331, 337, 515
Hin6I	GCGC	2 cut(s)	204, 231
HinP1I	GCGC	2 cut(s)	204, 231
HinfI	GANTC	4 cut(s)	49, 284, 359, 519
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	5 cut(s)	79, 139, 289, 406, 502
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	1 cut(s)	311
HpyCH4V	TGCA	4 cut(s)	8, 215, 311, 320
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 228, 317, 446
HpyF3I	CTNAG	2 cut(s)	403, 501
Hsp92II	CATG	6 cut(s)	133, 169, 194, 331, 337, 515
HspAI	GCGC	2 cut(s)	204, 231
Kzo9I	GATC	2 cut(s)	342, 371
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	2 cut(s)	193, 436
LweI	GCATC	1 cut(s)	329
MaeI	CTAG	2 cut(s)	113, 354
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	2 cut(s)	344, 373
MbiI	CCGCTC	1 cut(s)	564
MboI	GATC	2 cut(s)	342, 371
MboII	GAAGA	2 cut(s)	111, 430
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	1 cut(s)	463
MlyI	GAGTC	1 cut(s)	528
MnlI	CCTC	1 cut(s)	244
Mph1103I	ATGCAT	1 cut(s)	10
MseI	TTAA	2 cut(s)	275, 462
MslI	CAYNNNNRTG	1 cut(s)	332
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	4 cut(s)	212, 228, 317, 446
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	2 cut(s)	342, 371
NlaIII	CATG	6 cut(s)	133, 169, 194, 331, 337, 515
NlaIV	GGNNCC	1 cut(s)	559
NmeAIII	GCCGAG	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	481
NsiI	ATGCAT	1 cut(s)	10
NspI	RCATGY	1 cut(s)	194
PciI	ACATGT	1 cut(s)	190
PfeI	GAWTC	3 cut(s)	49, 284, 359
PflFI	GACNNNGTC	2 cut(s)	158, 518
PkrI	GCNGC	2 cut(s)	208, 451
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
PscI	ACATGT	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	559
PspPI	GGNCC	2 cut(s)	337, 536
PstNI	CAGNNNCTG	1 cut(s)	522
PsyI	GACNNNGTC	2 cut(s)	158, 518
RsaI	GTAC	6 cut(s)	23, 111, 134, 238, 300, 553
RsaNI	GTAC	6 cut(s)	22, 110, 133, 237, 299, 552
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	275, 462
SatI	GCNGC	2 cut(s)	207, 450
Sau3AI	GATC	2 cut(s)	342, 371
Sau96I	GGNCC	2 cut(s)	337, 536
SchI	GAGTC	1 cut(s)	528
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	2 cut(s)	310, 355
SfaNI	GCATC	1 cut(s)	329
SinI	GGWCC	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	1 cut(s)	463
SsiI	CCGC	3 cut(s)	382, 412, 562
SspI	AATATT	1 cut(s)	399
SspMI	CTAG	2 cut(s)	113, 354
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	2 cut(s)	304, 327
TasI	AATT	1 cut(s)	463
TatI	WGTACW	2 cut(s)	109, 132
TfiI	GAWTC	3 cut(s)	49, 284, 359
Tru1I	TTAA	2 cut(s)	275, 462
Tru9I	TTAA	2 cut(s)	275, 462
TscAI	CASTG	3 cut(s)	91, 318, 352
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	2 cut(s)	206, 449
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	1 cut(s)	53
TspRI	CASTG	3 cut(s)	91, 318, 352
Tth111I	GACNNNGTC	2 cut(s)	158, 518
VneI	GTGCAC	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	337
XceI	RCATGY	1 cut(s)	194
XspI	CTAG	2 cut(s)	113, 354
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.