Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Forward (+)

558899 .. 564999

Gene Structure 6101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2988 bp

ATGGCGACCTTGGTGAGCTCCGCCGGTGGGCTACTGGCTATGCTGAATGAGACCCATCCCTCGCTCAAGCTCCACGCTTTGTCCAACCTCAACAGATTGGTCGACGGCTTTTGGCCCGAGATCTCGACTAGCGTAACCATCATAGAAAGTTTGTATGAAGATGAGGAGTTTGATCTGCATCAGAGACAACTGGCTGCATTGCTTGTGTCAAAGGTTTTCTACTATTTGGGTGAACTTAATGACTCACTTTCCTATGCCCTTGGAGCTGGTTCCTTGTTTGATGTGTCGGACGATTCTTATTATGTTCATACTCTTCTTGCCAAAGCTATAGATGAGTATGCCAGTCTGAAGTCAAAGGCAGCAGAATCCAATGCTGAATCAGTAAATGTGGATTCTAGGTTGGAGGCCATTGTGGAGAGAATGCTGAACAAGTGCATCATGGATGGAAAATACCAACAAGCTATGGGTATTGCAATTGAATGTCGAAGATTGGATAAGCTTGAGGAAGCAATCATAAAAAGTGATAATGTTCAAGGAACATTGTCATATTGCATTCATGTCTCTCATTCCTTTGTTAATCTTAGAGAATATAGACATGAGGTCCTTCGTCTTCTTGTCAAAGTGTATCAGAAGCTACCTTCTCCTGATTACTTGAGCATTTGCCAGTGTCTCATGTTCCTGGATGAACCAGAAGGTGTAGCGAACATATTGGAAAGGCTTCTGCGATCTGAAGACAAGGATGATGCACTTTTGGCATATCAAATAGCCTTTGATCTAATAGAGAATGAGCACCAAGCTTTTCTCTTAAATGTGAGAAACCGCCTTTCACCTCCGAAGACTCAACCTTCAGAACCCGTGCAGCCAGAATCAACTGAAGCTTCTCAAAACGAAAGTTCTGCTGCAGAGGATGTTCAAATGACAGATGAACGTTCTACTCCTAATGTGACTGTGAATGAAGATCCGAAAGAAGTGGTCTATTCTGAAAGGCTGACAAAAATTAAAGGAATTTTGTCTGGAGAAACGTCAATACAGTTGACTTTACAATTTTTGTACAGTCACAACAAGTCCGATCTTCTTATTTTGAAGACAATAAAGCAGTCAGTCGAGATGAGAAATAGTGTATGCCATAGTGCTACAATTTATGCTAATGCAATTATGCATGCTGGAACAACCGTGGACACGTTCCTGAGGGAGAATCTGGACTGGTTAAGTAGAGCTACAAATTGGGCTAAGTTCAGTGCAACAGCAGGGCTAGGTGTTATCCACAGAGGCCACTTGCAGCAGGGAAGATCGCTGATGGCACCTTACTTGCCTCAGGGTTCAGCAGGTGGCGGTGGAAGTCCATATTCAGAAGGTGGTGCTCTGTATGCTCTGGGTCTGATTCATGCCAACCATGGCGAGGGCATCAAACAATTCCTTCGCGATAGCCTGCGTAGTACTAATGTGGAGGTTATTCAACATGGTGCATGCTTAGGTCTTGGCTTGTCAGCTTTAGGAACTGCCGATGAAGAGATCTATGATGACATTAAAACTGTGCTATATACTGACAGTGCCGTTGCTGGTGAAGCTGCTGGGATTAGTATGGGTTTGCTTATGGTTGGAACTGCAAGTGAGAAGGCTAGTGAGATGCTTGCCTATGCACATGAGACACAGCATGAAAAGATTATCAGAGGGTTAGCGTTGGGGATTGCTCTGACGGTATATGGGAGAGAAGAAGAAGCTGACACTCTAATCGAGCAGATGACAAGAGATCAAGATCCTATTCTACGTTATGGTGGCATGTATGCACTGGCGTTGGCCTACAGTGGGACAGCAAACAACAAAGCCATCCGTCAGCTACTGCATTTTGCTGTATCAGATGTGAGTGATGATGTTAGGAGGACTGCTGTTCTAGCACTTGGGTTTGTCTTGTACTCCGAGCCAGAGCAGACACCTCGAATTGTCTCCCTGCTATCTGAGTCCTACAATCCTCATGTTCGATATGGTGCTGCTCTTGCCGTAGGCATTTCTTGTGCTGGTACTGGCTTGAGTGAGGCCATTTCTTTGCTAGAGCCTCTAACTTCAGATGTGGTTGATTTTGTGCGCCAAGGTGCCCTCATTGCAATGGCGATGGTCATGGTCCAAATTAGTGAAGCCAGTGATTCTCGCGTTGGAGCATTCAGGCGGCAATTGGAGAAAATAATTCTTGACAAGCATGAGGACACCATGAGCAAAATGGGTGCAATCTTGGCCTCTGGGATTCTTGATGGTGGGGGAAGAAATGTGACGATTAGACTGCTTTCCAAGACGAAACATGATAAAGTTACTGCAGTTGTTGGCCTTGCTGTTTTCAGCCAATTTTGGTACTGGTATCCCCTTATATACTTTTTAAGCTTGTCATTCTCACCAACGGCTTTGATAGGACTGAACTCGGACCTGAAAGTTCCGAAGTTTGAGTTCCTTTCACATGCAAAGCCTTCACTGTTTGAATATCCTAAACCTACCACTGTGCCAACCACTACGTCGGCCATAAAACTGCCCACTGCTGTGCTGTCAACATCTGCAAAGGCCACGAAAGCTAGGGCCAAGAAAGAAGCAGAGAAGGCAAATGCTGAAAAATTATCTGGGGCCGAGACTTCTGGAAAAGGAAAATCATCGAGTGAGAAAGATGGGGATGCAATGCAGGTTGATAGCTCAACAGAGAAGAAATCAGAGCCTGAGCCTTGTTTTGAGATTTTGACGAACCCAGCTAGGGTGGTTCCTGCTCAGGAGCAATACATTAAATTTCTGGAAGATAGCCGATATGTGCCAGTCAAGTTAGCACCATCTGGATTTGTTCTCTTGAGAGACCTGAAACCGGATGAACCTGAGGTGCTATCACTTACAGACACACCGTCTTCCACAGCTTCACCTGCTGGTGGAGCAGCAGCAGGACAGCCGGCAGCCTCTGCCGCCATGGCAGTCGATGAGGAACCACAGCCTCCTCAAGCCTTTGAATACACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

996

Amino Acids

108.35

Weight (kDa)

5.18

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN2_N	PF21505	7 - 354	9.2e-89	26S proteasome subunit RPN2, N-terminal domain
PC_rep	PF01851	488 - 521	4e-06	Proteasome/cyclosome repeat
HEAT_2	PF13646	611 - 703	2e-11	HEAT repeats
PC_rep	PF01851	662 - 695	2.8e-06	Proteasome/cyclosome repeat
RPN2_C	PF18004	797 - 951	4.4e-47	26S proteasome regulatory subunit RPN2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1316, 2899
Acc36I	ACCTGC	3 cut(s)	1316, 2653, 2899
AccB1I	GGYRCC	2 cut(s)	1300, 2090
AccI	GTMKAC	1 cut(s)	102
AccII	CGCG	2 cut(s)	1422, 2148
AciI	CCGC	5 cut(s)	21, 820, 1332, 2164, 2931
AclI	AACGTT	1 cut(s)	928
AclWI	GGATC	2 cut(s)	953, 1751
AcoI	YGGCCR	1 cut(s)	2505
AcsI	RAATTY	2 cut(s)	1005, 2762
AcuI	CTGAAG	5 cut(s)	368, 750, 831, 894, 2046
AfaI	GTAC	5 cut(s)	1052, 1438, 1913, 2020, 2345
AfiI	CCNNNNNNNGG	6 cut(s)	27, 1399, 1806, 2731, 2836, 2897
AflIII	ACRYGT	1 cut(s)	1179
AgsI	TTSAA	7 cut(s)	479, 533, 914, 1084, 1457, 2468, 2975
AhdI	GACNNNNNGTC	2 cut(s)	599, 2872
AjnI	CCWGG	1 cut(s)	678
AleI	CACNNNNGTG	1 cut(s)	2525
Alw21I	GWGCWC	3 cut(s)	20, 792, 1363
Alw26I	GTCTC	8 cut(s)	44, 178, 565, 674, 1640, 1948, 2606, 2820
AlwI	GGATC	2 cut(s)	953, 1751
AlwNI	CAGNNNCTG	3 cut(s)	1840, 2696, 2927
Ama87I	CYCGRG	1 cut(s)	116
ApoI	RAATTY	2 cut(s)	1005, 2762
Asp700I	GAANNNNTTC	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	2085
AspS9I	GGNCC	6 cut(s)	114, 601, 2119, 2413, 2562, 2607
AsuHPI	GGTGA	6 cut(s)	25, 242, 819, 1574, 2376, 2880
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	3 cut(s)	601, 2119, 2413
AxyI	CCTNAGG	3 cut(s)	1187, 1314, 2847
BaeGI	GKGCMC	1 cut(s)	2095
BanI	GGYRCC	2 cut(s)	1300, 2090
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	5 cut(s)	602, 738, 842, 1091, 2868
Bbv12I	GWGCWC	3 cut(s)	20, 792, 1363
BccI	CCATC	9 cut(s)	63, 146, 437, 1291, 1835, 2104, 2240, 2642, 2812
BceAI	ACGGC	4 cut(s)	121, 1538, 1982, 2406
BcgI	CGANNNNNNTGC	6 cut(s)	878, 912, 1916, 1950, 2257, 2291
BciT130I	CCWGG	1 cut(s)	680
BciVI	GTATCC	1 cut(s)	2361
BcoDI	GTCTC	8 cut(s)	44, 178, 565, 674, 1640, 1948, 2606, 2820
BfaI	CTAG	8 cut(s)	129, 396, 1253, 1620, 1892, 2048, 2559, 2730
BfmI	CTRYAG	4 cut(s)	327, 900, 1801, 2307
BfuAI	ACCTGC	3 cut(s)	1316, 2653, 2899
BfuI	GTATCC	1 cut(s)	2361
BglI	GCCNNNNNGGC	1 cut(s)	2936
BglII	AGATCT	2 cut(s)	120, 1512
BmcAI	AGTACT	1 cut(s)	1438
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	3 cut(s)	601, 2119, 2413
BmeRI	GACNNNNNGTC	2 cut(s)	599, 2872
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	6 cut(s)	114, 601, 2119, 2413, 2562, 2607
BmiI	GGNNCC	6 cut(s)	271, 1302, 2092, 2608, 2739, 2952
BmrFI	CCNGG	1 cut(s)	680
BmsI	GCATC	6 cut(s)	187, 444, 733, 1413, 1617, 2644
BpiI	GAAGAC	5 cut(s)	602, 738, 842, 1091, 2868
BpmI	CTGGAG	1 cut(s)	1035
Bpu10I	CCTNAGC	3 cut(s)	1471, 2697, 2745
BpuEI	CTTGAG	6 cut(s)	50, 521, 673, 2047, 2842, 2949
BsaBI	GATNNNNATC	2 cut(s)	177, 1755
BsaI	GGTCTC	2 cut(s)	44, 2820
BsaJI	CCNNGG	6 cut(s)	9, 259, 1173, 1393, 2086, 2934
BsaWI	WCCGGW	1 cut(s)	2836
Bsc4I	CCNNNNNNNGG	6 cut(s)	27, 1399, 1806, 2731, 2836, 2897
Bse118I	RCCGGY	2 cut(s)	23, 2917
Bse21I	CCTNAGG	3 cut(s)	1187, 1314, 2847
Bse3DI	GCAATG	4 cut(s)	197, 2097, 2109, 2664
Bse8I	GATNNNNATC	2 cut(s)	177, 1755
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	6 cut(s)	9, 259, 1173, 1393, 2086, 2934
BseGI	GGATG	8 cut(s)	55, 448, 688, 745, 913, 1827, 2659, 2845
BseJI	GATNNNNATC	2 cut(s)	177, 1755
BseLI	CCNNNNNNNGG	6 cut(s)	27, 1399, 1806, 2731, 2836, 2897
BseMI	GCAATG	4 cut(s)	197, 2097, 2109, 2664
BseMII	CTCAG	6 cut(s)	1178, 1328, 1947, 2688, 2759, 2838
BseRI	GAGGAG	2 cut(s)	179, 2952
BseSI	GKGCMC	1 cut(s)	2095
BseYI	CCCAGC	2 cut(s)	1571, 2725
BsgI	GTGCAG	1 cut(s)	878
Bsh1236I	CGCG	2 cut(s)	1422, 2148
BshNI	GGYRCC	2 cut(s)	1300, 2090
BsiHKAI	GWGCWC	3 cut(s)	20, 792, 1363
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	3 cut(s)	24, 2837, 2918
BslFI	GGGAC	1 cut(s)	1822
BslI	CCNNNNNNNGG	6 cut(s)	27, 1399, 1806, 2731, 2836, 2897
BsmAI	GTCTC	8 cut(s)	44, 178, 565, 674, 1640, 1948, 2606, 2820
BsmFI	GGGAC	1 cut(s)	1822
BsmI	GAATGC	3 cut(s)	426, 552, 2156
Bso31I	GGTCTC	2 cut(s)	44, 2820
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	4 cut(s)	20, 792, 1363, 2095
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp19I	CCATGG	2 cut(s)	1393, 2934
Bsp68I	TCGCGA	1 cut(s)	1422
BspACI	CCGC	5 cut(s)	21, 820, 1332, 2164, 2931
BspCNI	CTCAG	6 cut(s)	1179, 1327, 1948, 2689, 2758, 2839
BspFNI	CGCG	2 cut(s)	1422, 2148
BspLI	GGNNCC	6 cut(s)	271, 1302, 2092, 2608, 2739, 2952
BspMAI	CTGCAG	2 cut(s)	904, 2311
BspMI	ACCTGC	3 cut(s)	1316, 2653, 2899
BspPI	GGATC	2 cut(s)	953, 1751
BspT107I	GGYRCC	2 cut(s)	1300, 2090
BspTNI	GGTCTC	2 cut(s)	44, 2820
BsrDI	GCAATG	4 cut(s)	197, 2097, 2109, 2664
BsrFI	RCCGGY	2 cut(s)	23, 2917
BsrGI	TGTACA	1 cut(s)	1050
BssAI	RCCGGY	2 cut(s)	23, 2917
BssECI	CCNNGG	6 cut(s)	9, 259, 1173, 1393, 2086, 2934
BssT1I	CCWWGG	5 cut(s)	9, 259, 1393, 2086, 2934
Bst2UI	CCWGG	1 cut(s)	680
Bst6I	CTCTTC	2 cut(s)	318, 1503
BstAPI	GCANNNNNTGC	1 cut(s)	2927
BstAUI	TGTACA	1 cut(s)	1050
BstC8I	GCNNGC	5 cut(s)	1161, 1430, 1468, 1632, 2919
BstDEI	CTNAG	9 cut(s)	581, 1187, 1230, 1314, 1471, 1956, 2697, 2745, 2847
BstDSI	CCRYGG	3 cut(s)	1173, 1393, 2934
BstF5I	GGATG	8 cut(s)	55, 448, 688, 745, 913, 1827, 2659, 2845
BstFNI	CGCG	2 cut(s)	1422, 2148
BstHHI	GCGC	1 cut(s)	2085
BstMAI	GTCTC	8 cut(s)	44, 178, 565, 674, 1640, 1948, 2606, 2820
BstNI	CCWGG	1 cut(s)	680
BstNSI	RCATGY	4 cut(s)	1163, 1470, 1783, 2450
BstSCI	CCNGG	1 cut(s)	678
BstSFI	CTRYAG	4 cut(s)	327, 900, 1801, 2307
BstSLI	GKGCMC	1 cut(s)	2095
BstUI	CGCG	2 cut(s)	1422, 2148
BstV2I	GAAGAC	5 cut(s)	602, 738, 842, 1091, 2868
BstX2I	RGATCY	4 cut(s)	120, 958, 1512, 1756
BstYI	RGATCY	4 cut(s)	120, 958, 1512, 1756
Bsu36I	CCTNAGG	3 cut(s)	1187, 1314, 2847
BsuI	GTATCC	1 cut(s)	2361
BtgI	CCRYGG	3 cut(s)	1173, 1393, 2934
BtgZI	GCGATG	1 cut(s)	2123
BtsCI	GGATG	8 cut(s)	55, 448, 688, 745, 913, 1827, 2659, 2845
BtsI	GCAGTG	2 cut(s)	2520, 2979
BtuMI	TCGCGA	1 cut(s)	1422
BveI	ACCTGC	3 cut(s)	1316, 2653, 2899
Cac8I	GCNNGC	5 cut(s)	1161, 1430, 1468, 1632, 2919
CaiI	CAGNNNCTG	3 cut(s)	1840, 2696, 2927
CfoI	GCGC	1 cut(s)	2085
Cfr10I	RCCGGY	2 cut(s)	23, 2917
Cfr13I	GGNCC	6 cut(s)	114, 601, 2119, 2413, 2562, 2607
Csp6I	GTAC	5 cut(s)	1051, 1437, 1912, 2019, 2344
CviQI	GTAC	5 cut(s)	1051, 1437, 1912, 2019, 2344
DdeI	CTNAG	9 cut(s)	581, 1187, 1230, 1314, 1471, 1956, 2697, 2745, 2847
DriI	GACNNNNNGTC	2 cut(s)	599, 2872
EaeI	YGGCCR	1 cut(s)	2505
Eam1104I	CTCTTC	2 cut(s)	318, 1503
Eam1105I	GACNNNNNGTC	2 cut(s)	599, 2872
EarI	CTCTTC	2 cut(s)	318, 1503
EciI	GGCGGA	1 cut(s)	10
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	5 cut(s)	9, 259, 1393, 2086, 2934
Eco24I	GRGCYC	1 cut(s)	20
Eco31I	GGTCTC	2 cut(s)	44, 2820
Eco47I	GGWCC	3 cut(s)	601, 2119, 2413
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	5 cut(s)	368, 750, 831, 894, 2046
Eco81I	CCTNAGG	3 cut(s)	1187, 1314, 2847
Eco88I	CYCGRG	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	601
EcoRII	CCWGG	1 cut(s)	678
EcoT14I	CCWWGG	5 cut(s)	9, 259, 1393, 2086, 2934
EcoT22I	ATGCAT	1 cut(s)	1161
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	5 cut(s)	9, 259, 1393, 2086, 2934
FaqI	GGGAC	1 cut(s)	1822
FblI	GTMKAC	1 cut(s)	102
FokI	GGATG	8 cut(s)	42, 455, 695, 752, 920, 1814, 2666, 2852
FriOI	GRGCYC	1 cut(s)	20
FspBI	CTAG	8 cut(s)	129, 396, 1253, 1620, 1892, 2048, 2559, 2730
GlaI	GCGC	1 cut(s)	2084
GsaI	CCCAGC	2 cut(s)	1575, 2729
GsuI	CTGGAG	1 cut(s)	1035
HapII	CCGG	3 cut(s)	24, 2837, 2918
HhaI	GCGC	1 cut(s)	2085
Hin6I	GCGC	1 cut(s)	2083
HinP1I	GCGC	1 cut(s)	2083
HincII	GTYRAC	3 cut(s)	103, 1035, 2535
HindII	GTYRAC	3 cut(s)	103, 1035, 2535
HindIII	AAGCTT	4 cut(s)	497, 795, 876, 2371
HpaII	CCGG	3 cut(s)	24, 2837, 2918
HphI	GGTGA	6 cut(s)	25, 242, 819, 1574, 2376, 2880
Hpy166II	GTNNAC	5 cut(s)	103, 233, 1035, 1177, 2535
Hpy8I	GTNNAC	5 cut(s)	103, 233, 1035, 1177, 2535
Hpy99I	CGWCG	2 cut(s)	107, 2506
HpyAV	CCTTC	9 cut(s)	614, 648, 686, 855, 1346, 1427, 1609, 2466, 2575
HpyCH4IV	ACGT	5 cut(s)	928, 1022, 1181, 1768, 2501
HpyF3I	CTNAG	9 cut(s)	581, 1187, 1230, 1314, 1471, 1956, 2697, 2745, 2847
HpySE526I	ACGT	5 cut(s)	928, 1022, 1181, 1768, 2501
HspAI	GCGC	1 cut(s)	2083
KroI	GCCGGC	1 cut(s)	2917
KroNI	GCCGGC	1 cut(s)	2919
LmnI	GCTCC	6 cut(s)	23, 75, 263, 2153, 2749, 2900
LweI	GCATC	6 cut(s)	187, 444, 733, 1413, 1617, 2644
MaeI	CTAG	8 cut(s)	129, 396, 1253, 1620, 1892, 2048, 2559, 2730
MaeII	ACGT	5 cut(s)	928, 1022, 1181, 1768, 2501
MaeIII	GTNAC	5 cut(s)	133, 943, 1055, 2263, 2302
MfeI	CAATTG	2 cut(s)	474, 2168
MflI	RGATCY	4 cut(s)	120, 958, 1512, 1756
MhlI	GDGCHC	4 cut(s)	20, 792, 1363, 2095
MlyI	GAGTC	3 cut(s)	236, 832, 1967
MmeI	TCCRAC	5 cut(s)	108, 267, 381, 1579, 2131
Mph1103I	ATGCAT	1 cut(s)	1161
MroNI	GCCGGC	1 cut(s)	2917
MroXI	GAANNNNTTC	1 cut(s)	717
MseI	TTAA	8 cut(s)	237, 576, 806, 999, 1208, 1527, 2369, 2760
MslI	CAYNNNNRTG	2 cut(s)	2102, 2525
MspI	CCGG	3 cut(s)	24, 2837, 2918
MspR9I	CCNGG	1 cut(s)	680
MunI	CAATTG	2 cut(s)	474, 2168
Mva1269I	GAATGC	3 cut(s)	426, 552, 2156
MvaI	CCWGG	1 cut(s)	680
MvnI	CGCG	2 cut(s)	1422, 2148
NaeI	GCCGGC	1 cut(s)	2919
NcoI	CCATGG	2 cut(s)	1393, 2934
NgoMIV	GCCGGC	1 cut(s)	2917
NlaIV	GGNNCC	6 cut(s)	271, 1302, 2092, 2608, 2739, 2952
NmeAIII	GCCGAG	1 cut(s)	2635
NmuCI	GTSAC	3 cut(s)	943, 1055, 2263
NruI	TCGCGA	1 cut(s)	1422
NsiI	ATGCAT	1 cut(s)	1161
NspI	RCATGY	4 cut(s)	1163, 1470, 1783, 2450
OliI	CACNNNNGTG	1 cut(s)	2525
PaeI	GCATGC	2 cut(s)	1163, 1470
PaqCI	CACCTGC	2 cut(s)	1316, 2899
PctI	GAATGC	3 cut(s)	426, 552, 2156
PdiI	GCCGGC	1 cut(s)	2919
PdmI	GAANNNNTTC	1 cut(s)	717
PfeI	GAWTC	9 cut(s)	293, 365, 377, 392, 866, 1195, 1381, 2141, 2239
PfoI	TCCNGGA	1 cut(s)	678
PleI	GAGTC	3 cut(s)	236, 832, 1966
PpsI	GAGTC	3 cut(s)	236, 832, 1966
PpuMI	RGGWCCY	1 cut(s)	601
Psp124BI	GAGCTC	1 cut(s)	20
Psp1406I	AACGTT	1 cut(s)	928
Psp5II	RGGWCCY	1 cut(s)	601
Psp6I	CCWGG	1 cut(s)	678
PspFI	CCCAGC	2 cut(s)	1571, 2725
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	6 cut(s)	271, 1302, 2092, 2608, 2739, 2952
PspPI	GGNCC	6 cut(s)	114, 601, 2119, 2413, 2562, 2607
PspPPI	RGGWCCY	1 cut(s)	601
PstI	CTGCAG	2 cut(s)	904, 2311
PstNI	CAGNNNCTG	3 cut(s)	1840, 2696, 2927
PsuI	RGATCY	4 cut(s)	120, 958, 1512, 1756
RruI	TCGCGA	1 cut(s)	1422
RsaI	GTAC	5 cut(s)	1052, 1438, 1913, 2020, 2345
RsaNI	GTAC	5 cut(s)	1051, 1437, 1912, 2019, 2344
RseI	CAYNNNNRTG	2 cut(s)	2102, 2525
SacI	GAGCTC	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	101
SaqAI	TTAA	8 cut(s)	237, 576, 806, 999, 1208, 1527, 2369, 2760
Sau96I	GGNCC	6 cut(s)	114, 601, 2119, 2413, 2562, 2607
ScaI	AGTACT	1 cut(s)	1438
SchI	GAGTC	3 cut(s)	236, 832, 1967
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	4 cut(s)	20, 792, 1363, 2095
SfaNI	GCATC	6 cut(s)	187, 444, 733, 1413, 1617, 2644
SfcI	CTRYAG	4 cut(s)	327, 900, 1801, 2307
SgrAI	CRCCGGYG	1 cut(s)	23
SinI	GGWCC	3 cut(s)	601, 2119, 2413
SmiMI	CAYNNNNRTG	2 cut(s)	2102, 2525
SmlI	CTYRAG	6 cut(s)	65, 500, 652, 2026, 2821, 2964
SmoI	CTYRAG	6 cut(s)	65, 500, 652, 2026, 2821, 2964
SphI	GCATGC	2 cut(s)	1163, 1470
SsiI	CCGC	5 cut(s)	21, 820, 1332, 2164, 2931
SspMI	CTAG	8 cut(s)	129, 396, 1253, 1620, 1892, 2048, 2559, 2730
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	678
StyI	CCWWGG	5 cut(s)	9, 259, 1393, 2086, 2934
TaiI	ACGT	5 cut(s)	931, 1025, 1184, 1771, 2504
TaqI	TCGA	9 cut(s)	102, 125, 484, 1104, 1734, 1936, 1978, 2636, 2943
TatI	WGTACW	3 cut(s)	1050, 1436, 1911
TauI	GCSGC	2 cut(s)	2167, 2933
TfiI	GAWTC	9 cut(s)	293, 365, 377, 392, 866, 1195, 1381, 2141, 2239
Tru1I	TTAA	8 cut(s)	237, 576, 806, 999, 1208, 1527, 2369, 2760
Tru9I	TTAA	8 cut(s)	237, 576, 806, 999, 1208, 1527, 2369, 2760
TseFI	GTSAC	3 cut(s)	943, 1055, 2263
Tsp45I	GTSAC	3 cut(s)	943, 1055, 2263
TspGWI	ACGGA	1 cut(s)	1820
VpaK11BI	GGWCC	3 cut(s)	601, 2119, 2413
XapI	RAATTY	2 cut(s)	1005, 2762
XceI	RCATGY	4 cut(s)	1163, 1470, 1783, 2450
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2212
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	8 cut(s)	129, 396, 1253, 1620, 1892, 2048, 2559, 2730
ZrmI	AGTACT	1 cut(s)	1438
Zsp2I	ATGCAT	1 cut(s)	1161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.