Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Reverse (-)

23435021 .. 23436879

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG156000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGGGTTGCAAATTTCCCAAATACGATTTTGGGACATTGGTTGTGATGAGCTCAAATTGAGTCAACTACCAGTGAGCTTGACGACTACACCTGGGCAGAGGATGACAAGAGTCATAGGAATCTCTTGGCAGGTTGTTCAACATGGGGCCTGCTTAGGTATTGGCTTATTTGCTTTAGGAACTGCAGGTAAGGAGATTTACGAAGACCTTAAAAGTGTGCTCTGTACCGAAAATGCCATTGCCTGTTCAGCTGCTGGTATTAGTATGGGTCTGCTCATGGTTGGAACTGGCAGTGAACATGCCATCGAGATGCTTGCTTATGCACATAAAACAGAGAATGAAAAGATCATCAGGGGGTTGGCAATGGGGATTGCCCTTACACTTTATGGAAAAGAAGATGATGCAGATGTCAGTGATGATGTTAGAAGAACTGATGTACTAGCACTCGGCTTTGTCATGTACTCCGAGCCAGAGCTGACCCCTGACATTGTCTCCATGCTTTCTGCATCGTATAATCCATATGTTAGATATGGCACTGCTCTTGCAGTAGGCGTTTCCTGCGCTGGTACAGGCTTGAGTGAGGCCATATCTTTGTTAGAACCATTGACTTTGGATTCAAATGATTTTGTACGCCAAGGTGTACTGATTGCATCGGCCATGGTCATGGTCCAGATCAGTGAACCTAGTGATTCTCGTGTAGGATCATTCAGACGGCTTTTGGAGCGAATATTCTCAGACAAGCGAGAGAAGATACAAACACAAATGGGGGAAATCCTGGCTGCCGGAATACTTGATTTTGGTGGCAGGAATGTCACCATAAAACTTGTGTCTGAGACGAAACATGACAGATACTATGCTATTGTTGGCCTGGCTGTTTTCACCCAGTATTGGTACTGGCACCCGCTCATATACTTTTTGACCTTGGCATTCTCACCAACAACCTTTATAGGACTGAACATTAACCTGAAGATTCCTAGGTTTGAGTTCATGTCGCTTGCAAAACCATCTCTGTTTGACTATCCTAAACCTTGTCCTGTGCCAGTGGAGGCTGAGCCTTCTTTTGCTATTTTAACCAACCCATCTAGGGTGCTGCCAGCCCAAGAAAAATACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

371

Amino Acids

40.73

Weight (kDa)

5.27

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_2	PF13646	136 - 216	1e-05	HEAT repeats
PC_rep	PF01851	178 - 212	4.1e-06	Proteasome/cyclosome repeat
RPN2_C	PF18004	313 - 351	6.1e-09	26S proteasome regulatory subunit RPN2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	121, 176
AccB1I	GGYRCC	1 cut(s)	897
AccBSI	CCGCTC	1 cut(s)	904
AciI	CCGC	1 cut(s)	902
AclWI	GGATC	1 cut(s)	709
AcoI	YGGCCR	1 cut(s)	654
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	986
AfaI	GTAC	7 cut(s)	226, 438, 461, 568, 630, 642, 893
AfiI	CCNNNNNNNGG	2 cut(s)	888, 1084
AgsI	TTSAA	2 cut(s)	140, 618
AjnI	CCWGG	3 cut(s)	91, 774, 867
AluBI	AGCT	4 cut(s)	52, 78, 251, 475
AluI	AGCT	4 cut(s)	52, 78, 251, 475
Alw21I	GWGCWC	2 cut(s)	54, 222
Alw26I	GTCTC	2 cut(s)	496, 827
AlwI	GGATC	1 cut(s)	709
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	4 cut(s)	147, 582, 654, 865
ApeKI	GCWGC	3 cut(s)	251, 779, 1090
ApoI	RAATTY	1 cut(s)	12
AspA2I	CCTAGG	1 cut(s)	974
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	2 cut(s)	147, 667
AsuHPI	GGTGA	3 cut(s)	805, 871, 924
AvaII	GGWCC	1 cut(s)	667
AvrII	CCTAGG	1 cut(s)	974
BanI	GGYRCC	1 cut(s)	897
BanII	GRGCYC	1 cut(s)	54
BauI	CACGAG	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	2 cut(s)	54, 222
BbvI	GCAGC	3 cut(s)	238, 766, 1077
BccI	CCATC	3 cut(s)	311, 1012, 1087
BceAI	ACGGC	1 cut(s)	728
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	3 cut(s)	93, 776, 869
BcoDI	GTCTC	2 cut(s)	496, 827
BfaI	CTAG	5 cut(s)	440, 684, 975, 1083, 1114
BfmI	CTRYAG	1 cut(s)	183
BfuAI	ACCTGC	2 cut(s)	121, 176
BisI	GCNGC	3 cut(s)	252, 780, 1091
BlnI	CCTAGG	1 cut(s)	974
BlpI	GCTNAGC	1 cut(s)	1050
BlsI	GCNGC	3 cut(s)	253, 781, 1092
Bme1390I	CCNGG	3 cut(s)	93, 776, 869
Bme18I	GGWCC	1 cut(s)	667
BmgT120I	GGNCC	2 cut(s)	147, 667
BmiI	GGNNCC	2 cut(s)	148, 899
BmrFI	CCNGG	3 cut(s)	93, 776, 869
BmrI	ACTGGG	1 cut(s)	877
BmsI	GCATC	4 cut(s)	300, 391, 515, 659
BmuI	ACTGGG	1 cut(s)	877
BoxI	GACNNNNGTC	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	154
Bpu1102I	GCTNAGC	1 cut(s)	1050
BpuEI	CTTGAG	1 cut(s)	595
BsaJI	CCNNGG	5 cut(s)	92, 634, 657, 921, 974
BsaXI	ACNNNNNCTCC	2 cut(s)	476, 506
Bsc4I	CCNNNNNNNGG	2 cut(s)	888, 1084
Bse1I	ACTGG	5 cut(s)	71, 292, 883, 899, 1040
Bse3DI	GCAATG	2 cut(s)	237, 369
BseBI	CCWGG	3 cut(s)	93, 776, 869
BseDI	CCNNGG	5 cut(s)	92, 634, 657, 921, 974
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	2 cut(s)	888, 1084
BseMI	GCAATG	2 cut(s)	237, 369
BseMII	CTCAG	3 cut(s)	747, 822, 1041
BseNI	ACTGG	5 cut(s)	71, 292, 883, 899, 1040
BseXI	GCAGC	3 cut(s)	238, 766, 1077
BshFI	GGCC	4 cut(s)	149, 584, 656, 867
BshNI	GGYRCC	1 cut(s)	897
BsiHKAI	GWGCWC	2 cut(s)	54, 222
BsiSI	CCGG	1 cut(s)	783
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	888, 1084
BsmAI	GTCTC	2 cut(s)	496, 827
BsmBI	CGTCTC	1 cut(s)	827
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	926
BsnI	GGCC	4 cut(s)	149, 584, 656, 867
Bsp1286I	GDGCHC	2 cut(s)	54, 222
Bsp143I	GATC	3 cut(s)	345, 672, 701
Bsp1720I	GCTNAGC	1 cut(s)	1050
Bsp19I	CCATGG	1 cut(s)	657
BspACI	CCGC	1 cut(s)	902
BspANI	GGCC	4 cut(s)	149, 584, 656, 867
BspCNI	CTCAG	3 cut(s)	746, 823, 1042
BspLI	GGNNCC	2 cut(s)	148, 899
BspMAI	CTGCAG	1 cut(s)	187
BspMI	ACCTGC	2 cut(s)	121, 176
BspPI	GGATC	1 cut(s)	709
BspT107I	GGYRCC	1 cut(s)	897
BsrBI	CCGCTC	1 cut(s)	904
BsrDI	GCAATG	2 cut(s)	237, 369
BsrI	ACTGG	5 cut(s)	71, 292, 883, 899, 1040
BssECI	CCNNGG	5 cut(s)	92, 634, 657, 921, 974
BssMI	GATC	3 cut(s)	345, 672, 701
BssSI	CACGAG	1 cut(s)	693
BssT1I	CCWWGG	4 cut(s)	634, 657, 921, 974
Bst2BI	CACGAG	1 cut(s)	693
Bst2UI	CCWGG	3 cut(s)	93, 776, 869
BstC8I	GCNNGC	4 cut(s)	151, 315, 996, 1095
BstDEI	CTNAG	4 cut(s)	154, 733, 831, 1050
BstDSI	CCRYGG	1 cut(s)	657
BstF5I	GGATG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	3 cut(s)	348, 675, 704
BstMAI	GTCTC	2 cut(s)	496, 827
BstMBI	GATC	3 cut(s)	345, 672, 701
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 558, 721
BstNI	CCWGG	3 cut(s)	93, 776, 869
BstNSI	RCATGY	1 cut(s)	302
BstPAI	GACNNNNGTC	1 cut(s)	110
BstSCI	CCNGG	3 cut(s)	91, 774, 867
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	238, 766, 1077
BstV2I	GAAGAC	1 cut(s)	210
BstXI	CCANNNNNNTGG	1 cut(s)	664
BsuRI	GGCC	4 cut(s)	149, 584, 656, 867
BtgI	CCRYGG	1 cut(s)	657
BtsCI	GGATG	1 cut(s)	108
BtsI	GCAGTG	2 cut(s)	298, 534
BtsIMutI	CAGTG	6 cut(s)	78, 298, 418, 534, 682, 1047
BveI	ACCTGC	2 cut(s)	121, 176
Cac8I	GCNNGC	4 cut(s)	151, 315, 996, 1095
CaiI	CAGNNNCTG	1 cut(s)	254
CfoI	GCGC	1 cut(s)	563
Cfr13I	GGNCC	2 cut(s)	147, 667
Csp6I	GTAC	7 cut(s)	225, 437, 460, 567, 629, 641, 892
CviAII	CATG	9 cut(s)	143, 277, 299, 457, 496, 658, 664, 842, 988
CviQI	GTAC	7 cut(s)	225, 437, 460, 567, 629, 641, 892
DdeI	CTNAG	4 cut(s)	154, 733, 831, 1050
DpnI	GATC	3 cut(s)	347, 674, 703
DpnII	GATC	3 cut(s)	345, 672, 701
EaeI	YGGCCR	1 cut(s)	654
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	4 cut(s)	634, 657, 921, 974
Eco24I	GRGCYC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	667
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	986
EcoICRI	GAGCTC	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	147
EcoRII	CCWGG	3 cut(s)	91, 774, 867
EcoT14I	CCWWGG	4 cut(s)	634, 657, 921, 974
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	4 cut(s)	634, 657, 921, 974
Esp3I	CGTCTC	1 cut(s)	827
FaeI	CATG	9 cut(s)	146, 280, 302, 460, 499, 661, 667, 845, 991
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	9 cut(s)	142, 276, 298, 456, 495, 657, 663, 841, 987
FauI	CCCGC	1 cut(s)	909
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	3 cut(s)	252, 780, 1091
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	3 cut(s)	252, 780, 1091
FspBI	CTAG	5 cut(s)	440, 684, 975, 1083, 1114
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	3 cut(s)	252, 780, 1091
HaeIII	GGCC	4 cut(s)	149, 584, 656, 867
HapII	CCGG	1 cut(s)	783
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	9 cut(s)	146, 280, 302, 460, 499, 661, 667, 845, 991
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HincII	GTYRAC	1 cut(s)	65
HindII	GTYRAC	1 cut(s)	65
HinfI	GANTC	6 cut(s)	61, 111, 120, 614, 689, 970
HpaII	CCGG	1 cut(s)	783
HphI	GGTGA	3 cut(s)	805, 871, 924
Hpy166II	GTNNAC	4 cut(s)	65, 296, 641, 680
Hpy188I	TCNGA	4 cut(s)	466, 710, 736, 832
Hpy188III	TCNNGA	2 cut(s)	307, 670
Hpy8I	GTNNAC	4 cut(s)	65, 296, 641, 680
HpyAV	CCTTC	1 cut(s)	1065
HpyCH4V	TGCA	8 cut(s)	10, 185, 323, 404, 506, 545, 650, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 558, 721
HpyF3I	CTNAG	4 cut(s)	154, 733, 831, 1050
Hsp92II	CATG	9 cut(s)	146, 280, 302, 460, 499, 661, 667, 845, 991
HspAI	GCGC	1 cut(s)	561
Kzo9I	GATC	3 cut(s)	345, 672, 701
LmnI	GCTCC	1 cut(s)	721
Lsp1109I	GCAGC	3 cut(s)	238, 766, 1077
LweI	GCATC	4 cut(s)	300, 391, 515, 659
MaeI	CTAG	5 cut(s)	440, 684, 975, 1083, 1114
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	3 cut(s)	347, 674, 703
MbiI	CCGCTC	1 cut(s)	904
MboI	GATC	3 cut(s)	345, 672, 701
MboII	GAAGA	5 cut(s)	215, 407, 438, 760, 979
MhlI	GDGCHC	2 cut(s)	54, 222
MluCI	AATT	2 cut(s)	12, 56
MlyI	GAGTC	2 cut(s)	70, 120
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	3 cut(s)	93, 574, 1039
MseI	TTAA	3 cut(s)	210, 960, 1070
MslI	CAYNNNNRTG	2 cut(s)	308, 662
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	783
MspR9I	CCNGG	3 cut(s)	93, 776, 869
Mva1269I	GAATGC	1 cut(s)	926
MvaI	CCWGG	3 cut(s)	93, 776, 869
MwoI	GCNNNNNNNGC	3 cut(s)	248, 558, 721
NcoI	CCATGG	1 cut(s)	657
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	3 cut(s)	345, 672, 701
NlaIII	CATG	9 cut(s)	146, 280, 302, 460, 499, 661, 667, 845, 991
NlaIV	GGNNCC	2 cut(s)	148, 899
NmeAIII	GCCGAG	1 cut(s)	426
NmuCI	GTSAC	1 cut(s)	811
NspI	RCATGY	1 cut(s)	302
PctI	GAATGC	1 cut(s)	926
PfeI	GAWTC	4 cut(s)	120, 614, 689, 970
PflFI	GACNNNGTC	1 cut(s)	488
PkrI	GCNGC	3 cut(s)	253, 781, 1092
PleI	GAGTC	2 cut(s)	69, 119
PpsI	GAGTC	2 cut(s)	69, 119
PshAI	GACNNNNGTC	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	3 cut(s)	91, 774, 867
PspGI	CCWGG	3 cut(s)	91, 774, 867
PspN4I	GGNNCC	2 cut(s)	148, 899
PspPI	GGNCC	2 cut(s)	147, 667
PstI	CTGCAG	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	254
PsyI	GACNNNGTC	1 cut(s)	488
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	7 cut(s)	226, 438, 461, 568, 630, 642, 893
RsaNI	GTAC	7 cut(s)	225, 437, 460, 567, 629, 641, 892
RseI	CAYNNNNRTG	2 cut(s)	308, 662
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	210, 960, 1070
SatI	GCNGC	3 cut(s)	252, 780, 1091
Sau3AI	GATC	3 cut(s)	345, 672, 701
Sau96I	GGNCC	2 cut(s)	147, 667
SchI	GAGTC	2 cut(s)	70, 120
ScrFI	CCNGG	3 cut(s)	93, 776, 869
SduI	GDGCHC	2 cut(s)	54, 222
SfaNI	GCATC	4 cut(s)	300, 391, 515, 659
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	667
SmiMI	CAYNNNNRTG	2 cut(s)	308, 662
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	2 cut(s)	12, 56
SsiI	CCGC	1 cut(s)	902
SspI	AATATT	1 cut(s)	729
SspMI	CTAG	5 cut(s)	440, 684, 975, 1083, 1114
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	3 cut(s)	91, 774, 867
StyI	CCWWGG	4 cut(s)	634, 657, 921, 974
TaqI	TCGA	1 cut(s)	306
TasI	AATT	2 cut(s)	12, 56
TatI	WGTACW	3 cut(s)	436, 459, 640
TfiI	GAWTC	4 cut(s)	120, 614, 689, 970
Tru1I	TTAA	3 cut(s)	210, 960, 1070
Tru9I	TTAA	3 cut(s)	210, 960, 1070
TscAI	CASTG	6 cut(s)	78, 298, 418, 541, 682, 1047
TseFI	GTSAC	1 cut(s)	811
TseI	GCWGC	3 cut(s)	251, 779, 1090
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	2 cut(s)	354, 976
TspRI	CASTG	6 cut(s)	78, 298, 418, 541, 682, 1047
Tth111I	GACNNNGTC	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	667
XapI	RAATTY	1 cut(s)	12
XceI	RCATGY	1 cut(s)	302
XmaJI	CCTAGG	1 cut(s)	974
XspI	CTAG	5 cut(s)	440, 684, 975, 1083, 1114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.