Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Reverse (-)

22331509 .. 22331862

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG164400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGGGAAATCCTGGCTGCCGGAATACTTGATTTTGGTGGCAGGAATGTCACCATAAAACTTGTGTCTGAGACGAAACATGACAGATACTATGCTATTGTTGGCCTGGCTGTTTTCACCCAGTATTGGTACTGGCACCCGCTCATATACTTTTTGACCTTGGCATTCTCACCAACAACCTTTATAGGACTGAACATTAACCTGAAGATTCCTAGGTTTGAGTTCATGTCGCTTGCAAAACCATCTCTGTTTGACTATCCTAAACCTTGTCCTGTGCCAGTGGAGGCTGAGCCTTCTTTTGCTATTTTAACCAACCCATCTAGGGTGCTGCCAGCCCAAGAAAAATACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

117

Amino Acids

13.3

Weight (kDa)

7.84

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN2_C	PF18004	59 - 97	9.5e-10	26S proteasome regulatory subunit RPN2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	135
AccBSI	CCGCTC	1 cut(s)	142
AciI	CCGC	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	126, 322
AjnI	CCWGG	2 cut(s)	12, 105
Alw26I	GTCTC	1 cut(s)	65
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	2 cut(s)	17, 328
AspA2I	CCTAGG	1 cut(s)	212
AsuHPI	GGTGA	3 cut(s)	43, 109, 162
AvrII	CCTAGG	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	4, 315
BccI	CCATC	2 cut(s)	250, 325
BciT130I	CCWGG	2 cut(s)	14, 107
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	3 cut(s)	213, 321, 352
BisI	GCNGC	2 cut(s)	18, 329
BlnI	CCTAGG	1 cut(s)	212
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	2 cut(s)	19, 330
Bme1390I	CCNGG	2 cut(s)	14, 107
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	2 cut(s)	14, 107
BmrI	ACTGGG	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	115
Bpu1102I	GCTNAGC	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	159, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 322
Bse1I	ACTGG	3 cut(s)	121, 137, 278
BseBI	CCWGG	2 cut(s)	14, 107
BseDI	CCNNGG	2 cut(s)	159, 212
BseLI	CCNNNNNNNGG	2 cut(s)	126, 322
BseMII	CTCAG	2 cut(s)	60, 279
BseNI	ACTGG	3 cut(s)	121, 137, 278
BseXI	GCAGC	2 cut(s)	4, 315
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	126, 322
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	105
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	61, 280
BspLI	GGNNCC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	135
BsrBI	CCGCTC	1 cut(s)	142
BsrI	ACTGG	3 cut(s)	121, 137, 278
BssECI	CCNNGG	2 cut(s)	159, 212
BssT1I	CCWWGG	2 cut(s)	159, 212
Bst2UI	CCWGG	2 cut(s)	14, 107
BstC8I	GCNNGC	2 cut(s)	234, 333
BstDEI	CTNAG	2 cut(s)	69, 288
BstMAI	GTCTC	1 cut(s)	65
BstNI	CCWGG	2 cut(s)	14, 107
BstSCI	CCNGG	2 cut(s)	12, 105
BstV1I	GCAGC	2 cut(s)	4, 315
BsuRI	GGCC	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	2 cut(s)	234, 333
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	2 cut(s)	80, 226
CviJI	RGCY	6 cut(s)	17, 105, 110, 287, 292, 335
CviKI_1	RGCY	6 cut(s)	17, 105, 110, 287, 292, 335
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	2 cut(s)	69, 288
Eco130I	CCWWGG	2 cut(s)	159, 212
Eco57I	CTGAAG	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	12, 105
EcoT14I	CCWWGG	2 cut(s)	159, 212
ErhI	CCWWGG	2 cut(s)	159, 212
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	2 cut(s)	83, 229
FaiI	YATR	7 cut(s)	56, 81, 93, 146, 148, 185, 227
FatI	CATG	2 cut(s)	79, 225
FauI	CCCGC	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	18, 329
Fsp4HI	GCNGC	2 cut(s)	18, 329
FspBI	CTAG	3 cut(s)	213, 321, 352
GluI	GCNGC	2 cut(s)	18, 329
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	2 cut(s)	83, 229
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	3 cut(s)	43, 109, 162
Hpy188I	TCNGA	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	303
HpyCH4V	TGCA	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	69, 288
Hsp92II	CATG	2 cut(s)	83, 229
Lsp1109I	GCAGC	2 cut(s)	4, 315
MaeI	CTAG	3 cut(s)	213, 321, 352
MaeIII	GTNAC	1 cut(s)	49
MbiI	CCGCTC	1 cut(s)	142
MboII	GAAGA	1 cut(s)	217
MnlI	CCTC	1 cut(s)	277
MseI	TTAA	2 cut(s)	198, 308
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	14, 107
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	2 cut(s)	14, 107
NlaIII	CATG	2 cut(s)	83, 229
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	49
PctI	GAATGC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	19, 330
Psp6I	CCWGG	2 cut(s)	12, 105
PspGI	CCWGG	2 cut(s)	12, 105
PspN4I	GGNNCC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SaqAI	TTAA	2 cut(s)	198, 308
SatI	GCNGC	2 cut(s)	18, 329
ScrFI	CCNGG	2 cut(s)	14, 107
SetI	ASST	5 cut(s)	161, 182, 204, 218, 268
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	3 cut(s)	213, 321, 352
StyD4I	CCNGG	2 cut(s)	12, 105
StyI	CCWWGG	2 cut(s)	159, 212
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	198, 308
Tru9I	TTAA	2 cut(s)	198, 308
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	2 cut(s)	17, 328
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	285
XmaJI	CCTAGG	1 cut(s)	212
XspI	CTAG	3 cut(s)	213, 321, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.