Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8360047.1

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1004

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8360047.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 673 bp

atgggagcaatcttggcctctggaattcttgacgctggcggaaggaatgtgacaataagactgctttctaagacaaaacatgataaagtcactgcagtggttggccttgctgttttcagccaattttggtactggtatcccctcatatatttcttgagcttggcattctcaccaacagctttgataggattgaactatgaccttaaagttccgaagtttcagttcctgtcatatgcaaaaccttctctgtttgaatatcctaaaccgaccactgtggcaaccactacatcggccgtgaaactccccactgctgttctgtcaacatcagcaaaggccaccaaagctagggccaagaaagaagctgcagatcagaaggccaatcctgaaaagacaaatcctgggggagagacatcttcaggaaagggaaaatcttctagtgagaaagattgggattcaatgcaggttgatagctcaacagagaagaaatcagaacctgaaccggcttttgagtttttgaccaacccagctagggtggttcctgctcaggaggaatacattaagtttctggaagagagcagatatgtgcctgtcaagctagcaccatcaggatttgttctcttgagagaccaaagacctactgaaccagaagtgctctcacttacggatacaccct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

224

Amino Acids

24.53

Weight (kDa)

9.06

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	451
AciI	CCGC	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	2 cut(s)	345, 529
AgsI	TTSAA	3 cut(s)	193, 254, 456
AjnI	CCWGG	1 cut(s)	397
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	7 cut(s)	159, 179, 344, 362, 471, 527, 595
AluI	AGCT	7 cut(s)	159, 179, 344, 362, 471, 527, 595
Alw21I	GWGCWC	1 cut(s)	654
Alw26I	GTCTC	2 cut(s)	401, 618
AlwNI	CAGNNNCTG	2 cut(s)	226, 494
AoxI	GGCC	6 cut(s)	15, 103, 291, 333, 348, 375
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	162
AsuNHI	GCTAGC	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	654
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	1 cut(s)	610
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	399
BciVI	GTATCC	2 cut(s)	147, 658
BcoDI	GTCTC	2 cut(s)	401, 618
BfaI	CTAG	4 cut(s)	345, 435, 528, 596
BfmI	CTRYAG	2 cut(s)	93, 363
BfuAI	ACCTGC	1 cut(s)	451
BfuI	GTATCC	2 cut(s)	147, 658
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	1 cut(s)	399
BmtI	GCTAGC	1 cut(s)	599
Bpu10I	CCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	2 cut(s)	175, 640
BsaI	GGTCTC	1 cut(s)	618
BsaJI	CCNNGG	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 529
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	398
BseLI	CCNNNNNNNGG	2 cut(s)	345, 529
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	1 cut(s)	137
BseX3I	CGGCCG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	349
BseYI	CCCAGC	1 cut(s)	523
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	6 cut(s)	17, 105, 293, 335, 350, 377
BsiEI	CGRYCG	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	654
BsiSI	CCGG	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	345, 529
BsmAI	GTCTC	2 cut(s)	401, 618
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	6 cut(s)	17, 105, 293, 335, 350, 377
Bso31I	GGTCTC	1 cut(s)	618
Bsp1286I	GDGCHC	1 cut(s)	654
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	6 cut(s)	17, 105, 293, 335, 350, 377
BspCNI	CTCAG	1 cut(s)	556
BspLI	GGNNCC	1 cut(s)	537
BspMAI	CTGCAG	2 cut(s)	97, 367
BspMI	ACCTGC	1 cut(s)	451
BspOI	GCTAGC	1 cut(s)	599
BspTNI	GGTCTC	1 cut(s)	618
BsrFI	RCCGGY	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	564
BstC8I	GCNNGC	2 cut(s)	37, 597
BstDEI	CTNAG	2 cut(s)	69, 543
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	2 cut(s)	401, 618
BstMBI	GATC	1 cut(s)	367
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 341, 592
BstNI	CCWGG	1 cut(s)	399
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	2 cut(s)	93, 363
BstV1I	GCAGC	1 cut(s)	349
BstZI	CGGCCG	1 cut(s)	291
BsuI	GTATCC	2 cut(s)	147, 658
BsuRI	GGCC	6 cut(s)	17, 105, 293, 335, 350, 377
BtsI	GCAGTG	3 cut(s)	90, 102, 306
BtsIMutI	CAGTG	4 cut(s)	90, 102, 270, 306
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	2 cut(s)	37, 597
CaiI	CAGNNNCTG	2 cut(s)	226, 494
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	348
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	1 cut(s)	80
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	2 cut(s)	69, 543
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	291
EagI	CGGCCG	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
EciI	GGCGGA	1 cut(s)	54
EclXI	CGGCCG	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	618
Eco52I	CGGCCG	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	399
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	397
FaeI	CATG	1 cut(s)	83
FaiI	YATR	7 cut(s)	81, 146, 148, 198, 232, 234, 582
FatI	CATG	1 cut(s)	79
FauNDI	CATATG	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	4 cut(s)	345, 435, 528, 596
GluI	GCNGC	1 cut(s)	363
GsaI	CCCAGC	1 cut(s)	527
HaeIII	GGCC	6 cut(s)	17, 105, 293, 335, 350, 377
HapII	CCGG	1 cut(s)	500
HgaI	GACGC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	1 cut(s)	500
HphI	GGTGA	1 cut(s)	162
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	3 cut(s)	213, 372, 490
Hpy188III	TCNNGA	9 cut(s)	21, 29, 154, 383, 417, 545, 566, 606, 619
Hpy8I	GTNNAC	1 cut(s)	321
HpyAV	CCTTC	3 cut(s)	36, 252, 367
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	4 cut(s)	95, 236, 365, 460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 341, 592
HpyF3I	CTNAG	2 cut(s)	69, 543
Hsp92II	CATG	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	1 cut(s)	5
Lsp1109I	GCAGC	1 cut(s)	349
MaeI	CTAG	4 cut(s)	345, 435, 528, 596
MaeIII	GTNAC	2 cut(s)	49, 88
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	4 cut(s)	405, 423, 493, 581
MhlI	GDGCHC	1 cut(s)	654
MluCI	AATT	2 cut(s)	24, 122
MnlI	CCTC	3 cut(s)	28, 152, 541
MroXI	GAANNNNTTC	1 cut(s)	430
MseI	TTAA	2 cut(s)	204, 558
MslI	CAYNNNNRTG	1 cut(s)	95
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	3 cut(s)	14, 341, 592
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	1 cut(s)	367
NheI	GCTAGC	1 cut(s)	595
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	2 cut(s)	49, 88
OliI	CACNNNNGTG	1 cut(s)	95
PctI	GAATGC	1 cut(s)	164
PdmI	GAANNNNTTC	1 cut(s)	430
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	397
PspFI	CCCAGC	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	397
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	1 cut(s)	348
PstI	CTGCAG	2 cut(s)	97, 367
PstNI	CAGNNNCTG	2 cut(s)	226, 494
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	204, 558
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	654
SfcI	CTRYAG	2 cut(s)	93, 363
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	2 cut(s)	154, 619
SmoI	CTYRAG	2 cut(s)	154, 619
Sse9I	AATT	2 cut(s)	24, 122
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	4 cut(s)	345, 435, 528, 596
StyD4I	CCNGG	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	274
TasI	AATT	2 cut(s)	24, 122
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	2 cut(s)	204, 558
Tru9I	TTAA	2 cut(s)	204, 558
TscAI	CASTG	4 cut(s)	97, 102, 277, 313
TseFI	GTSAC	2 cut(s)	49, 88
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	2 cut(s)	49, 88
TspRI	CASTG	4 cut(s)	97, 102, 277, 313
XapI	RAATTY	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	430
XspI	CTAG	4 cut(s)	345, 435, 528, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.