Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Forward (+)

1216691 .. 1224381

Gene Structure 7691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3009 bp

ATGGCGACCTTAGTGAGCTCGGCAGGTGGTCTACTTGCCATGCTGAACGAGTCCCGTCCGGAGCTAAAGCTCTACGCTTTGTCCAACCTCAACAAATTGGTTGATGGGTTCTGGCCCGAGATCTCCACCAGCGTCCCCATCATAGAAAGTTTGTATGAAGATGAAGAGTTTGGTCAGCATCAAAGACAACTGGCTGCATTGCTTGTTTCAAAGGTTTTCTACTATTTGGGTGAACTTAATGACTCACTGTCCTACGCCCTTGGAGCTGGATCCTTATTTGACGTGTCAGAAGATTCTTATTATATTCATACTCTTCTTGCTAAAGCTATAGATGAGTATGCCAGTCTTAAGTCTAAGGCAGCAGAATCAAATGCTGAAGCAGCAAATGTGGATCCTAGGTTGGAGGCTATCGTGGAGAGAATGCTGAATAAGTGTATCCTGGATGGGAAATATCAACAAGCTATGGGGATTGCAATTGAATGTCGAAGACTGGATAAACTTGAGGAAGCAATCATAAAGAGTGATAATGTTCAAGGAACCCTGTCATATTGCATCAATGTCTCTCATTCATATATTAATCTTAGAGAATACAGACGTGAGAACAATGAGGTGCTTCGTCTTCTTGTCAGAGTGTATCAAAAGCTGCCTTCTCCAGATTACTTGAGCATTTGTCAGTGTCTCATGTTCTTGGATGAACCAGAAGGTGTTGCAACCATATTGGAGAAGCTTCTGCGCTCTGAAAACAAGGAAGATGCACTTTTGGCATTTCAAATAGCCTTTGACCTCGTTGAGAATGAGCACCAAGCTTTTCTCTTAAATGTAAGAAATCGCCTTCCAGCTCCCAAGACTAAAACCTCGGAGCCAGTTCAACCAGAATCCAGTGAAGCTGCACAAAATGAAGGTTCTGCTCCAGAGGATGTTCAAATGACAGATGGAAGTTCTACTACCAGTGTGACTGTGCCTGAAGATCCAAGTGAAGTGATGTATTCCGAGAGACTGACAAAAATCAAAGGAATTTTGTCCGGAGAGACGTCGATAAAGTTGACCTTACAATTTCTGTACAGCCATAACAAGTCTGATCTGCTTATTCTGAAGACAATAAAGCAGTCTGTTGAGATGAGAAATAGTGTATGCCATAGTGCAACAATTTATGCTAATGCAATTATGCACGCTGGAACAACTGTGGATACATTTCTGAGGGAGAATCTGGACTGGTTAAGCAGAGCCACTAATTGGGCAAAATTCAGTGCAACTGCGGGGCTAGGTGTTATTCACAGAGGCCACTTGCAGCAGGGAAGATCTCTGATGGCACCATACTTGCCTCAGGGTGGGGCTGGTGGTGGTGGAAGTCCGTACTCAGAAGGTGGTGCTCTATATGCTCTGGGACTCATTCATGCCAACCATGGCGAGGGCATCAAACAGTTCCTTCGTGATAGCCTACGCAGTACTAATGTGGAGGTTATTCAACATGGGGCGTGCTTAGGTCTTGGCTTGTCAGCTTTAGGAACTGCTGATGAAGAGATTTATGATGACATTAAAAGTGTGCTGTATACTGACAGTGCCGTTGCTGGTGAAGCAGCTGGTATTAGTATGGGTTTACTCATGGTTGGAACTGCAAGTGAGAAGGCTAGTGAAATGCTTGCATATGCACATGAGACACAACACGAAAAAATCATCAGAGGGTTGGCACTGGGGATTGCCCTGACGGTATATGGAAGAGAAGAGGAAGCAGACACGCTAATTGAACAGATGACAAGAGATCAAGACCCCATATTGCGTTATGGTGGTATGTATGCATTGGCATTGGCCTATAGCGGGACAGCAAACAACAAAGCTATTCGCCAGCTGCTGCATTTTGCTGTGTCAGATGTGAGTGATGATGTTAGGAGAACTGCTGTTCTAGCCCTTGGTTTTGTCTTGTACTCTGAGCCAGAGCAGACGCCTCGTATTGTGTCCCTGCTATCTGAGTCCTACAACCCACATGTTCGATATGGTGCTGCTCTTGCAGTAGGAATTTCGTGTGCTGGTACTGGCTTGAGTGAGGCCATATCTTTGTTAGAGCCTCTGACTTCAGATGTTGTTGATTTTGTGCGTCAAGGTGCCCTCATTGCAATGGCTATGGTCATGGTCCAGATTAGTGAAGCTAGTGATTCTCGTGTTGGAGCTTTTAGGCGGCAATTAGAGAAAATAATTCTTGATAAGCATGAGGATACCATGAGCAAAATGGGAGCAATCTTGGCCTCGGGAATTCTTGACGCTGGCGGAAGGAATGTGACAATAAGACTGCTTTCTAAGACAAAACATGATAAAGTCACTGCAGTGGTTGGCCTTGCTGTTTTCAGCCAATTTTGGTACTGGTATCCCCTCATATATTTCTTGAGCTTGGCATTCTCACCAACAGCTTTTATAGGACTGAACTATGACCTTAAAGTTCCGAAGTTTCAGTTCCTGTCATATGCAAAACCTTCTCTGTTTGAATATCCTAAACCGACCACTGTGGCAACCACTACATCGGCCGTGAAACTCCCCACAGCTGTTCTGTCAACATCAGCAAAGGCCACCAAAGCTAGGGCCAAGAAAGAAGCTGCAGATCAGAAGGCTAATCCTGAAAAGACAAATCCTGGGGGAGAGACATCTTCAGGAAAGGGAAAATCTTCTAGTGAGAAAGATGGGGATTCAATGCAGGTTGATAGCTCAACAGAGAAGAAATCAGAACCTGAACTGGCTTTTGAGTTTTTGACCAACCCAGCTAGGGTGGTTCCTGCTCAGGAGGAATACATTAAGTTTCTGGAAGAGAGCAGATATGTGCCTGTCAAGCTAGCACCATCAGGATTTGTTCTCTTGAGAGACCAAAGACCTACTGAACCAGAAGTGCTCTCACTTACGGATACACCCTCTTCTACAGCGTCACCTGCTGGTGGATCAGCAACTGGACAGCCAGGATCTGCATCGGCCATGGCAGTTGATGAAGAACCTCAACCTCCTCAGCCTTTTGAGTACACTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

1002

Amino Acids

109.07

Weight (kDa)

5.18

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN2_N	PF21505	7 - 357	2.2e-87	26S proteasome subunit RPN2, N-terminal domain
PC_rep	PF01851	491 - 524	8.2e-06	Proteasome/cyclosome repeat
HEAT_2	PF13646	614 - 706	2e-11	HEAT repeats
PC_rep	PF01851	665 - 698	2.8e-06	Proteasome/cyclosome repeat
RPN2_C	PF18004	800 - 958	9.2e-44	26S proteasome regulatory subunit RPN2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	14, 2920
AatII	GACGTC	1 cut(s)	1034
Acc36I	ACCTGC	3 cut(s)	14, 2674, 2920
AccB1I	GGYRCC	2 cut(s)	1309, 2099
AccB7I	CCANNNNNTGG	1 cut(s)	1233
AccI	GTMKAC	2 cut(s)	31, 1550
AccIII	TCCGGA	2 cut(s)	58, 1022
AciI	CCGC	4 cut(s)	1256, 1815, 2173, 2262
AclWI	GGATC	7 cut(s)	264, 277, 386, 399, 962, 2929, 2950
AcoI	YGGCCR	2 cut(s)	2514, 2952
AcsI	RAATTY	4 cut(s)	1014, 1241, 2013, 2247
AcuI	CTGAAG	5 cut(s)	396, 984, 1112, 2055, 2622
AcyI	GRCGYC	2 cut(s)	1031, 1940
AdeI	CACNNNGTG	1 cut(s)	3006
AfaI	GTAC	7 cut(s)	1061, 1355, 1447, 1922, 2029, 2354, 2999
AfiI	CCNNNNNNNGG	7 cut(s)	1233, 1328, 1408, 1815, 2568, 2752, 2918
AflII	CTTAAG	1 cut(s)	347
AflIII	ACRYGT	2 cut(s)	282, 1981
AhdI	GACNNNNNGTC	1 cut(s)	247
AjiI	CACGTC	2 cut(s)	283, 596
AjnI	CCWGG	3 cut(s)	438, 2620, 2938
AleI	CACNNNNGTG	1 cut(s)	2318
Alw21I	GWGCWC	4 cut(s)	20, 801, 1372, 2877
Alw26I	GTCTC	7 cut(s)	565, 683, 988, 1022, 1649, 2624, 2841
AlwI	GGATC	7 cut(s)	264, 277, 386, 399, 962, 2929, 2950
AlwNI	CAGNNNCTG	5 cut(s)	1849, 2449, 2717, 2930, 2945
Ama87I	CYCGRG	2 cut(s)	116, 2242
Aor13HI	TCCGGA	2 cut(s)	58, 1022
ApoI	RAATTY	4 cut(s)	1014, 1241, 2013, 2247
AseI	ATTAAT	1 cut(s)	576
Asp700I	GAANNNNTTC	1 cut(s)	2653
AspA2I	CCTAGG	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	735
AspS9I	GGNCC	3 cut(s)	114, 2128, 2571
AsuHPI	GGTGA	4 cut(s)	242, 1583, 2385, 2901
AsuNHI	GCTAGC	1 cut(s)	2818
AvaI	CYCGRG	2 cut(s)	116, 2242
AvaII	GGWCC	1 cut(s)	2128
AvrII	CCTAGG	1 cut(s)	395
AxyI	CCTNAGG	1 cut(s)	1323
BaeGI	GKGCMC	1 cut(s)	2104
BamHI	GGATCC	2 cut(s)	269, 391
BanI	GGYRCC	2 cut(s)	1309, 2099
BanII	GRGCYC	1 cut(s)	20
BarI	GAAGNNNNNNTAC	2 cut(s)	928, 960
BauI	CACGAG	1 cut(s)	2154
BbsI	GAAGAC	3 cut(s)	493, 611, 1100
Bbv12I	GWGCWC	4 cut(s)	20, 801, 1372, 2877
BbvCI	CCTCAGC	1 cut(s)	2985
BccI	CCATC	7 cut(s)	98, 146, 437, 926, 1300, 2663, 2833
BceAI	ACGGC	2 cut(s)	1547, 2501
BcgI	CGANNNNNNTGC	2 cut(s)	1925, 1959
BciT130I	CCWGG	3 cut(s)	440, 2622, 2940
BciVI	GTATCC	5 cut(s)	446, 1180, 2203, 2370, 2881
BcoDI	GTCTC	7 cut(s)	565, 683, 988, 1022, 1649, 2624, 2841
BfaI	CTAG	9 cut(s)	396, 1262, 1629, 1901, 2145, 2568, 2658, 2751, 2819
BfmI	CTRYAG	5 cut(s)	327, 1810, 2316, 2586, 2901
BfrI	CTTAAG	1 cut(s)	347
BfuAI	ACCTGC	3 cut(s)	14, 2674, 2920
BfuI	GTATCC	5 cut(s)	446, 1180, 2203, 2370, 2881
BglII	AGATCT	2 cut(s)	120, 1298
BlnI	CCTAGG	1 cut(s)	395
BmcAI	AGTACT	1 cut(s)	1447
Bme1390I	CCNGG	3 cut(s)	440, 2622, 2940
Bme18I	GGWCC	1 cut(s)	2128
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmeT110I	CYCGRG	2 cut(s)	116, 2242
BmgBI	CACGTC	2 cut(s)	283, 596
BmgT120I	GGNCC	3 cut(s)	114, 2128, 2571
BmiI	GGNNCC	7 cut(s)	271, 393, 538, 861, 1311, 2101, 2760
BmrFI	CCNGG	3 cut(s)	440, 2622, 2940
BmrI	ACTGGG	1 cut(s)	1700
BmsI	GCATC	5 cut(s)	187, 561, 742, 1422, 2957
BmtI	GCTAGC	1 cut(s)	2822
BmuI	ACTGGG	1 cut(s)	1700
BpiI	GAAGAC	3 cut(s)	493, 611, 1100
BpmI	CTGGAG	2 cut(s)	636, 894
Bpu10I	CCTNAGC	3 cut(s)	1480, 2766, 2985
BpuEI	CTTGAG	5 cut(s)	521, 682, 2056, 2398, 2863
BsaBI	GATNNNNATC	1 cut(s)	2947
BsaHI	GRCGYC	2 cut(s)	1031, 1940
BsaI	GGTCTC	1 cut(s)	2841
BsaJI	CCNNGG	8 cut(s)	259, 395, 855, 1402, 1906, 2241, 2621, 2955
BsaWI	WCCGGW	2 cut(s)	58, 1022
Bsc4I	CCNNNNNNNGG	7 cut(s)	1233, 1328, 1408, 1815, 2568, 2752, 2918
Bse21I	CCTNAGG	1 cut(s)	1323
Bse3DI	GCAATG	3 cut(s)	197, 2106, 2118
Bse8I	GATNNNNATC	1 cut(s)	2947
BseAI	TCCGGA	2 cut(s)	58, 1022
BseBI	CCWGG	3 cut(s)	440, 2622, 2940
BseDI	CCNNGG	8 cut(s)	259, 395, 855, 1402, 1906, 2241, 2621, 2955
BseGI	GGATG	3 cut(s)	448, 697, 922
BseJI	GATNNNNATC	1 cut(s)	2947
BseLI	CCNNNNNNNGG	7 cut(s)	1233, 1328, 1408, 1815, 2568, 2752, 2918
BseMI	GCAATG	3 cut(s)	197, 2106, 2118
BseMII	CTCAG	7 cut(s)	1187, 1337, 1371, 1917, 1956, 2780, 2999
BseRI	GAGGAG	1 cut(s)	2973
BseSI	GKGCMC	1 cut(s)	2104
BseX3I	CGGCCG	1 cut(s)	2514
BseYI	CCCAGC	1 cut(s)	2746
BsgI	GTGCAG	1 cut(s)	873
Bsh1285I	CGRYCG	1 cut(s)	2517
BshNI	GGYRCC	2 cut(s)	1309, 2099
BsiEI	CGRYCG	1 cut(s)	2517
BsiHKAI	GWGCWC	4 cut(s)	20, 801, 1372, 2877
BsiHKCI	CYCGRG	2 cut(s)	116, 2242
BsiSI	CCGG	2 cut(s)	59, 1023
BslFI	GGGAC	5 cut(s)	37, 119, 1398, 1831, 1939
BslI	CCNNNNNNNGG	7 cut(s)	1233, 1328, 1408, 1815, 2568, 2752, 2918
BsmAI	GTCTC	7 cut(s)	565, 683, 988, 1022, 1649, 2624, 2841
BsmBI	CGTCTC	1 cut(s)	1022
BsmFI	GGGAC	5 cut(s)	37, 119, 1398, 1831, 1939
BsmI	GAATGC	2 cut(s)	426, 2387
Bso31I	GGTCTC	1 cut(s)	2841
BsoBI	CYCGRG	2 cut(s)	116, 2242
Bsp1286I	GDGCHC	5 cut(s)	20, 801, 1372, 2104, 2877
Bsp13I	TCCGGA	2 cut(s)	58, 1022
Bsp1407I	TGTACA	1 cut(s)	1059
Bsp19I	CCATGG	2 cut(s)	1402, 2955
BspACI	CCGC	4 cut(s)	1256, 1815, 2173, 2262
BspCNI	CTCAG	7 cut(s)	1188, 1336, 1370, 1918, 1957, 2779, 2998
BspEI	TCCGGA	2 cut(s)	58, 1022
BspLI	GGNNCC	7 cut(s)	271, 393, 538, 861, 1311, 2101, 2760
BspMAI	CTGCAG	2 cut(s)	2320, 2590
BspMI	ACCTGC	3 cut(s)	14, 2674, 2920
BspOI	GCTAGC	1 cut(s)	2822
BspPI	GGATC	7 cut(s)	264, 277, 386, 399, 962, 2929, 2950
BspT107I	GGYRCC	2 cut(s)	1309, 2099
BspTI	CTTAAG	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	2841
BsrDI	GCAATG	3 cut(s)	197, 2106, 2118
BsrGI	TGTACA	1 cut(s)	1059
BssECI	CCNNGG	8 cut(s)	259, 395, 855, 1402, 1906, 2241, 2621, 2955
BssNAI	GTATAC	1 cut(s)	1551
BssNI	GRCGYC	2 cut(s)	1031, 1940
BssSI	CACGAG	1 cut(s)	2154
BssT1I	CCWWGG	5 cut(s)	259, 395, 1402, 1906, 2955
Bst1107I	GTATAC	1 cut(s)	1551
Bst2BI	CACGAG	1 cut(s)	2154
Bst2UI	CCWGG	3 cut(s)	440, 2622, 2940
Bst4CI	ACNGT	8 cut(s)	249, 958, 1183, 1422, 1559, 1708, 2497, 3004
Bst6I	CTCTTC	7 cut(s)	159, 318, 1512, 1711, 1716, 2787, 2902
BstACI	GRCGYC	2 cut(s)	1031, 1940
BstAFI	CTTAAG	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	1059
BstC8I	GCNNGC	6 cut(s)	1170, 1477, 1641, 1844, 2260, 2820
BstDSI	CCRYGG	2 cut(s)	1402, 2955
BstF5I	GGATG	3 cut(s)	448, 697, 922
BstHHI	GCGC	1 cut(s)	735
BstMAI	GTCTC	7 cut(s)	565, 683, 988, 1022, 1649, 2624, 2841
BstMCI	CGRYCG	1 cut(s)	2517
BstNI	CCWGG	3 cut(s)	440, 2622, 2940
BstNSI	RCATGY	1 cut(s)	1985
BstSCI	CCNGG	3 cut(s)	438, 2620, 2938
BstSFI	CTRYAG	5 cut(s)	327, 1810, 2316, 2586, 2901
BstSLI	GKGCMC	1 cut(s)	2104
BstV2I	GAAGAC	3 cut(s)	493, 611, 1100
BstX2I	RGATCY	6 cut(s)	120, 269, 391, 967, 1298, 2942
BstYI	RGATCY	6 cut(s)	120, 269, 391, 967, 1298, 2942
BstZ17I	GTATAC	1 cut(s)	1551
BstZI	CGGCCG	1 cut(s)	2514
Bsu36I	CCTNAGG	1 cut(s)	1323
BsuI	GTATCC	5 cut(s)	446, 1180, 2203, 2370, 2881
BtgI	CCRYGG	2 cut(s)	1402, 2955
BtrI	CACGTC	2 cut(s)	283, 596
BtsCI	GGATG	3 cut(s)	448, 697, 922
BtsI	GCAGTG	2 cut(s)	2313, 2325
BveI	ACCTGC	3 cut(s)	14, 2674, 2920
Cac8I	GCNNGC	6 cut(s)	1170, 1477, 1641, 1844, 2260, 2820
CaiI	CAGNNNCTG	5 cut(s)	1849, 2449, 2717, 2930, 2945
CfoI	GCGC	1 cut(s)	735
Cfr13I	GGNCC	3 cut(s)	114, 2128, 2571
CseI	GACGC	5 cut(s)	121, 1948, 2081, 2264, 2895
Csp6I	GTAC	7 cut(s)	1060, 1354, 1446, 1921, 2028, 2353, 2998
CviQI	GTAC	7 cut(s)	1060, 1354, 1446, 1921, 2028, 2353, 2998
DraIII	CACNNNGTG	1 cut(s)	3006
DriI	GACNNNNNGTC	1 cut(s)	247
EaeI	YGGCCR	2 cut(s)	2514, 2952
EagI	CGGCCG	1 cut(s)	2514
Eam1104I	CTCTTC	7 cut(s)	159, 318, 1512, 1711, 1716, 2787, 2902
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EarI	CTCTTC	7 cut(s)	159, 318, 1512, 1711, 1716, 2787, 2902
EciI	GGCGGA	1 cut(s)	2277
Ecl136II	GAGCTC	1 cut(s)	18
EclXI	CGGCCG	1 cut(s)	2514
Eco130I	CCWWGG	5 cut(s)	259, 395, 1402, 1906, 2955
Eco24I	GRGCYC	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	2841
Eco47I	GGWCC	1 cut(s)	2128
Eco52I	CGGCCG	1 cut(s)	2514
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	5 cut(s)	396, 984, 1112, 2055, 2622
Eco81I	CCTNAGG	1 cut(s)	1323
Eco88I	CYCGRG	2 cut(s)	116, 2242
EcoICRI	GAGCTC	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	2247
EcoRII	CCWGG	3 cut(s)	438, 2620, 2938
EcoT14I	CCWWGG	5 cut(s)	259, 395, 1402, 1906, 2955
EcoT22I	ATGCAT	1 cut(s)	1798
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	5 cut(s)	259, 395, 1402, 1906, 2955
Esp3I	CGTCTC	1 cut(s)	1022
FalI	AAGNNNNNCTT	4 cut(s)	741, 773, 1031, 1063
FaqI	GGGAC	5 cut(s)	37, 119, 1398, 1831, 1939
FauI	CCCGC	2 cut(s)	1249, 1808
FauNDI	CATATG	2 cut(s)	1645, 2455
FblI	GTMKAC	2 cut(s)	31, 1550
FokI	GGATG	3 cut(s)	455, 704, 929
FriOI	GRGCYC	1 cut(s)	20
FspBI	CTAG	9 cut(s)	396, 1262, 1629, 1901, 2145, 2568, 2658, 2751, 2819
GlaI	GCGC	1 cut(s)	734
GsaI	CCCAGC	1 cut(s)	2750
GsuI	CTGGAG	2 cut(s)	636, 894
HapII	CCGG	2 cut(s)	59, 1023
HgaI	GACGC	5 cut(s)	121, 1948, 2081, 2264, 2895
HhaI	GCGC	1 cut(s)	735
Hin1I	GRCGYC	2 cut(s)	1031, 1940
Hin6I	GCGC	1 cut(s)	733
HinP1I	GCGC	1 cut(s)	733
HincII	GTYRAC	2 cut(s)	1044, 2544
HindII	GTYRAC	2 cut(s)	1044, 2544
HindIII	AAGCTT	2 cut(s)	725, 804
HpaII	CCGG	2 cut(s)	59, 1023
HphI	GGTGA	4 cut(s)	242, 1583, 2385, 2901
Hpy166II	GTNNAC	7 cut(s)	32, 233, 1044, 1551, 1598, 2544, 3000
Hpy8I	GTNNAC	7 cut(s)	32, 233, 1044, 1551, 1598, 2544, 3000
Hpy99I	CGWCG	1 cut(s)	1036
HpyCH4III	ACNGT	8 cut(s)	249, 958, 1183, 1422, 1559, 1708, 2497, 3004
HpyCH4IV	ACGT	3 cut(s)	282, 595, 1031
HpySE526I	ACGT	3 cut(s)	282, 595, 1031
Hsp92I	GRCGYC	2 cut(s)	1031, 1940
HspAI	GCGC	1 cut(s)	733
Kpn2I	TCCGGA	2 cut(s)	58, 1022
LmnI	GCTCC	7 cut(s)	61, 263, 844, 859, 913, 2162, 2228
LweI	GCATC	5 cut(s)	187, 561, 742, 1422, 2957
MaeI	CTAG	9 cut(s)	396, 1262, 1629, 1901, 2145, 2568, 2658, 2751, 2819
MaeII	ACGT	3 cut(s)	282, 595, 1031
MaeIII	GTNAC	4 cut(s)	952, 2272, 2311, 2907
MfeI	CAATTG	1 cut(s)	474
MflI	RGATCY	6 cut(s)	120, 269, 391, 967, 1298, 2942
MhlI	GDGCHC	5 cut(s)	20, 801, 1372, 2104, 2877
MlyI	GAGTC	4 cut(s)	59, 236, 1380, 1976
MmeI	TCCRAC	4 cut(s)	108, 381, 1588, 2140
Mph1103I	ATGCAT	1 cut(s)	1798
MroI	TCCGGA	2 cut(s)	58, 1022
MroXI	GAANNNNTTC	1 cut(s)	2653
MseI	TTAA	8 cut(s)	237, 348, 576, 815, 1217, 1536, 2427, 2781
MslI	CAYNNNNRTG	2 cut(s)	2111, 2318
MspA1I	CMGCKG	3 cut(s)	1580, 1846, 2534
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	2 cut(s)	59, 1023
MspR9I	CCNGG	3 cut(s)	440, 2622, 2940
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	2 cut(s)	426, 2387
MvaI	CCWGG	3 cut(s)	440, 2622, 2940
NcoI	CCATGG	2 cut(s)	1402, 2955
NdeI	CATATG	2 cut(s)	1645, 2455
NheI	GCTAGC	1 cut(s)	2818
NlaIV	GGNNCC	7 cut(s)	271, 393, 538, 861, 1311, 2101, 2760
NmuCI	GTSAC	4 cut(s)	952, 2272, 2311, 2907
NsiI	ATGCAT	1 cut(s)	1798
NspI	RCATGY	1 cut(s)	1985
OliI	CACNNNNGTG	1 cut(s)	2318
PaqCI	CACCTGC	2 cut(s)	14, 2920
PciI	ACATGT	1 cut(s)	1981
PctI	GAATGC	2 cut(s)	426, 2387
PdmI	GAANNNNTTC	1 cut(s)	2653
PfeI	GAWTC	6 cut(s)	293, 365, 875, 1204, 2150, 2675
PflMI	CCANNNNNTGG	1 cut(s)	1233
PfoI	TCCNGGA	1 cut(s)	438
PleI	GAGTC	4 cut(s)	58, 236, 1380, 1975
PpsI	GAGTC	4 cut(s)	58, 236, 1380, 1975
PscI	ACATGT	1 cut(s)	1981
PshBI	ATTAAT	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	3 cut(s)	438, 2620, 2938
PspFI	CCCAGC	1 cut(s)	2746
PspGI	CCWGG	3 cut(s)	438, 2620, 2938
PspN4I	GGNNCC	7 cut(s)	271, 393, 538, 861, 1311, 2101, 2760
PspPI	GGNCC	3 cut(s)	114, 2128, 2571
PstI	CTGCAG	2 cut(s)	2320, 2590
PstNI	CAGNNNCTG	5 cut(s)	1849, 2449, 2717, 2930, 2945
PsuI	RGATCY	6 cut(s)	120, 269, 391, 967, 1298, 2942
PvuII	CAGCTG	3 cut(s)	1580, 1846, 2534
RsaI	GTAC	7 cut(s)	1061, 1355, 1447, 1922, 2029, 2354, 2999
RsaNI	GTAC	7 cut(s)	1060, 1354, 1446, 1921, 2028, 2353, 2998
RseI	CAYNNNNRTG	2 cut(s)	2111, 2318
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	8 cut(s)	237, 348, 576, 815, 1217, 1536, 2427, 2781
Sau96I	GGNCC	3 cut(s)	114, 2128, 2571
ScaI	AGTACT	1 cut(s)	1447
SchI	GAGTC	4 cut(s)	59, 236, 1380, 1976
ScrFI	CCNGG	3 cut(s)	440, 2622, 2940
SduI	GDGCHC	5 cut(s)	20, 801, 1372, 2104, 2877
SfaNI	GCATC	5 cut(s)	187, 561, 742, 1422, 2957
SfcI	CTRYAG	5 cut(s)	327, 1810, 2316, 2586, 2901
SinI	GGWCC	1 cut(s)	2128
SmiMI	CAYNNNNRTG	2 cut(s)	2111, 2318
SmlI	CTYRAG	6 cut(s)	347, 500, 661, 2035, 2377, 2842
SmoI	CTYRAG	6 cut(s)	347, 500, 661, 2035, 2377, 2842
SsiI	CCGC	4 cut(s)	1256, 1815, 2173, 2262
SspMI	CTAG	9 cut(s)	396, 1262, 1629, 1901, 2145, 2568, 2658, 2751, 2819
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	3 cut(s)	438, 2620, 2938
StyI	CCWWGG	5 cut(s)	259, 395, 1402, 1906, 2955
TaaI	ACNGT	8 cut(s)	249, 958, 1183, 1422, 1559, 1708, 2497, 3004
TaiI	ACGT	3 cut(s)	285, 598, 1034
TaqI	TCGA	3 cut(s)	484, 1034, 1987
TatI	WGTACW	4 cut(s)	1059, 1445, 1920, 2997
TauI	GCSGC	1 cut(s)	2176
TfiI	GAWTC	6 cut(s)	293, 365, 875, 1204, 2150, 2675
Tru1I	TTAA	8 cut(s)	237, 348, 576, 815, 1217, 1536, 2427, 2781
Tru9I	TTAA	8 cut(s)	237, 348, 576, 815, 1217, 1536, 2427, 2781
TseFI	GTSAC	4 cut(s)	952, 2272, 2311, 2907
Tsp45I	GTSAC	4 cut(s)	952, 2272, 2311, 2907
TspDTI	ATGAA	9 cut(s)	171, 177, 296, 558, 708, 912, 1382, 1530, 2982
TspGWI	ACGGA	2 cut(s)	1341, 2900
Van91I	CCANNNNNTGG	1 cut(s)	1233
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	2128
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	4 cut(s)	1014, 1241, 2013, 2247
XceI	RCATGY	1 cut(s)	1985
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2221
XmaJI	CCTAGG	1 cut(s)	395
XmiI	GTMKAC	2 cut(s)	31, 1550
XmnI	GAANNNNTTC	1 cut(s)	2653
XspI	CTAG	9 cut(s)	396, 1262, 1629, 1901, 2145, 2568, 2658, 2751, 2819
ZraI	GACGTC	1 cut(s)	1032
ZrmI	AGTACT	1 cut(s)	1447
Zsp2I	ATGCAT	1 cut(s)	1798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.