Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Reverse (-)

63781723 .. 63788976

Gene Structure 7254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010168

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2859 bp

ATGGCGACCTTAGTGAGCTCGGCAGGTGGTCTACTTGCCATGCTGAACGAGTCCCGTCCGGAGCTAAAGCTCTACGCTTTGTCCAACCTCAACAAATTGGTTGATGGGTTTTGGCCCGAGATCTCCACCAGCGTCCCCATCATAGAAAGTTTGTATGAAGATGAAGAGTTTGGTCAGCATCAAAGACAACTGGCTGCATTGCTTGTTTCAAAGGTTTTCTACTATTTGGGTGAACTTAATGACTCACTGTCCTACGCCCTTGGAGCTGGATCCTTATTTGACGTGTCAGAAGATTCTTATTATATTCATACTCTTCTTGCTATGGGGATTGCAATTGAATGTCGAAGACTGGATAAACTTGAGGAAGCAATCATAAAGAGTGATAATGTTCAAGGAACCCTGTCATATTGCATCAATGTCTCTCATTCATATATTAATCTTAGAGAATACAGACGTGAGGTGCTTCGTCTTCTTGTCAGAGTGTATCAAAAGCTGCCTTCTCCAGATTACTTGAGCATTTGTCAGTGTCTCATGTTCTTGGATGAACCAGAAGGTGTTGCAACCATATTGGAGAAGCTCCTGCACTCTGAAAACAAGGAAGATGCACTTTTGGCATTTCAAATAGCCTTTGACCTTGTTGAGAATGAGCACCAAGCTTTTCTCTTAAATGTAAGAAATCGCCTTCCGGCTCCCAAGACTAAAACCTCAGAGCCAGTGCAACCAGAATCCAGTGAAGCTGCACAAAATGAAGGTTCTGCTCCAGGGGATGTTCAAATGACAGATGGAAGTTCTACTACCAGTGTGACTGTGCCTGAAGATCCAAGTGAAGTGATGTATTCTGAGAGACTGACAAAAATCAAAGGAATTTTGTCCGGAGAGACGTCTATAAAGTTGACCTTACAATTTCTGTACAGCCATAACAAGTCCGATCTGCTTATTCTGAAGACAATAAAGCAGTCTGTTGAGATGAGAAATAGTGTATGCCATAGTGCGACAATTTATGCTAATGCAATTATGCACGCTGGAACAACTGTGGATACATTTCTGAGGGAGAATCTGGACTGGTTAAGCAGAGCCACTAATTGGGCAAAATTCAGTGCAACAGCGGGGCTAGGTGTTATTCACAGAGGCCACTTGCAGCAGGGAAGATCTCTGATGGCACCTTATTTGCCTCAGGGTGGGGCTGGTGGTGGTGGAAGTCCATACTCGGAAGGTGGTGCTCTGTATGCTCTGGGACTCATTCATGCCAACCATGGCGAGGGCATCAAACAGTTCCTTCGTGATAGCCTACGCAGTACTAATGTGGAGGTTATTCAACATGGGGCGTGCTTGGGTCTTGGCTTGTCAGCTTTAGGAACTGCTGATGAAGAGATTTATGATGACATTAAAAGTGTGCTGTATACTGACAGTGCCGTTGCTGGTGAAGCAGCTGGTATTAGTATGGGTTTACTCATGGTTGGAACTGCAAGTGAGAAGGCTAGTGAAATGCTTGCATATGCACATGAGACACAACATGAAAAGATCATCAGAGGGTTGGCATTGGGGATTGCCCTGACGGTATATGGAAGAGAAGAGGAAGCAGACACGCTAATTGAACAGATGACAAGAGATCAAGACCCCATATTGCGTTATGGTGGTATGTATGCATTGGCATTGGCCTATAGCGGGACAGCAAACAACAAAGCTATTCGCCAGCTGCTGCATTTTGCTGTGTCAGATGTGAGTGATGATGTTAGGAGAACTGCTGTTCTAGCCCTTGGTTTTGTCTTGTACTCTGAGCCAGAGCAGACGCCTCGTATTGTCTCCCTGCTATCTGAGTCCTACAACCCACATGTTCGATATGGTGCTGCTCTTGCAGTAGGAATTTCGTGTGCTGGTACTGGCTTGAGTGAGGCCATATCTTTGTTAGAGCCTCTGACTTCAGATGTTGTTGATTTTGTGCGCCAAGGTGCCCTCATTGCAATGGCTATGGTCATGGTCCAGATTAGTGAAGCTAGTGATTCTCGTGTTGGAGCTTTTAGGCGGCAATTGGAGAAAATAATTCTTGATAAGCATGAGGATACCATGAGCAAAATGGGAGCAATCTTGGCCTCTGGAATTCTTGACGCTGGCGGAAGGAATGTGACAATAAGACTGCTTTCTAAGACAAAACATGATAAAGTCACTGCAGTGGTTGGCCTGGCTGTTTTCAGCCAATTTTGGTACTGGTATCCCCTTATATATTTCTTGAGCTTGGCATTCTCACCAACAGCTTTTATAGGACTGAACTATGACCTTAAAGTTCCGAAGTTTCAGTTCCTGTCATATGCAAAACCTTCTCTGTTTGAATATCCTAAACCGACCACTGTGGCAACCACTACATCGGCCGTGAAACTCCCCACTGCTGTTCTGTCAACATCAGCAAAGGCCACCAAAGCTAGAGCCAAGAAAGAAGCTGCAGATCAGAAGGCCAATCCTGAAAAGACAAATCCTGGGGGAGAGACATCTTCAGGAAAGGGAAAATCTTCTAGTGAGAAAGATGGGGATTCAATGCAGGTTGATAGCTCAACAGAGAAGAAATCAGAACCTGAACCGGCTTTTGAGTTTTTGACCAACCCAGCTAGGGTGGTTCCTGCTCAGGAGGAATACATTAAGTTTCTGGAAGAGAGCAGATATGTGCCTGTCAAGCTAGCACCATCAGGATTTGTTCTCTTGAGAGACCAAAGACCTACTGAACCAGAAGTGCTCTCACTTACGGATACACCCTCTTCTACAGCGTCACCTGCTGGTGGATCAGCAACTGGACAGCCAGGATCTGCATCGGCCATGGCAGTTGATGAAGAACCTCAACCTCCTCAGCCTTTTGAGTACACCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

953

Amino Acids

103.45

Weight (kDa)

5.23

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN2_N	PF21505	7 - 106	1e-35	26S proteasome subunit RPN2, N-terminal domain
RPN2_N	PF21505	106 - 307	8.8e-30	26S proteasome subunit RPN2, N-terminal domain
PC_rep	PF01851	441 - 474	7.8e-06	Proteasome/cyclosome repeat
HEAT_2	PF13646	564 - 656	1.9e-11	HEAT repeats
PC_rep	PF01851	615 - 648	2.7e-06	Proteasome/cyclosome repeat
RPN2_C	PF18004	750 - 908	1.2e-44	26S proteasome regulatory subunit RPN2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	14, 2770
AatII	GACGTC	1 cut(s)	884
Acc36I	ACCTGC	3 cut(s)	14, 2524, 2770
AccB1I	GGYRCC	2 cut(s)	1159, 1949
AccB7I	CCANNNNNTGG	1 cut(s)	1083
AccI	GTMKAC	2 cut(s)	31, 1400
AccIII	TCCGGA	2 cut(s)	58, 872
AciI	CCGC	4 cut(s)	1106, 1665, 2023, 2112
AclWI	GGATC	5 cut(s)	264, 277, 812, 2779, 2800
AcoI	YGGCCR	2 cut(s)	2364, 2802
AcsI	RAATTY	4 cut(s)	864, 1091, 1863, 2097
AcuI	CTGAAG	4 cut(s)	834, 962, 1905, 2472
AcyI	GRCGYC	2 cut(s)	881, 1790
AdeI	CACNNNGTG	1 cut(s)	2856
AfaI	GTAC	6 cut(s)	911, 1297, 1772, 1879, 2204, 2849
AfiI	CCNNNNNNNGG	6 cut(s)	1083, 1178, 1258, 1665, 2602, 2768
AflIII	ACRYGT	2 cut(s)	282, 1831
AgsI	TTSAA	9 cut(s)	210, 338, 392, 620, 773, 1316, 1595, 2327, 2529
AhdI	GACNNNNNGTC	1 cut(s)	247
AjiI	CACGTC	2 cut(s)	283, 455
AjnI	CCWGG	4 cut(s)	760, 2178, 2470, 2788
AleI	CACNNNNGTG	1 cut(s)	2168
Alw21I	GWGCWC	4 cut(s)	20, 651, 1222, 2727
Alw26I	GTCTC	8 cut(s)	424, 533, 838, 872, 1499, 1807, 2474, 2691
AlwI	GGATC	5 cut(s)	264, 277, 812, 2779, 2800
AlwNI	CAGNNNCTG	5 cut(s)	1699, 2299, 2567, 2780, 2795
Ama87I	CYCGRG	1 cut(s)	116
Aor13HI	TCCGGA	2 cut(s)	58, 872
ApeKI	GCWGC	9 cut(s)	194, 493, 737, 1138, 1427, 1696, 1699, 1847, 2435
ApoI	RAATTY	4 cut(s)	864, 1091, 1863, 2097
AseI	ATTAAT	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	2503
AspLEI	GCGC	1 cut(s)	1944
AspS9I	GGNCC	2 cut(s)	114, 1978
AsuHPI	GGTGA	4 cut(s)	242, 1433, 2235, 2751
AsuNHI	GCTAGC	1 cut(s)	2668
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	1978
AxyI	CCTNAGG	1 cut(s)	1173
BaeGI	GKGCMC	1 cut(s)	1954
BamHI	GGATCC	1 cut(s)	269
BanI	GGYRCC	2 cut(s)	1159, 1949
BanII	GRGCYC	1 cut(s)	20
BarI	GAAGNNNNNNTAC	2 cut(s)	778, 810
BauI	CACGAG	1 cut(s)	2004
BbsI	GAAGAC	3 cut(s)	352, 461, 950
Bbv12I	GWGCWC	4 cut(s)	20, 651, 1222, 2727
BbvCI	CCTCAGC	1 cut(s)	2835
BbvI	GCAGC	9 cut(s)	181, 480, 724, 1150, 1439, 1683, 1686, 1834, 2422
BccI	CCATC	6 cut(s)	98, 146, 776, 1150, 2513, 2683
BceAI	ACGGC	2 cut(s)	1397, 2351
BcgI	CGANNNNNNTGC	2 cut(s)	1775, 1809
BciT130I	CCWGG	4 cut(s)	762, 2180, 2472, 2790
BciVI	GTATCC	4 cut(s)	1030, 2053, 2220, 2731
BcoDI	GTCTC	8 cut(s)	424, 533, 838, 872, 1499, 1807, 2474, 2691
BfaI	CTAG	8 cut(s)	1112, 1479, 1751, 1995, 2418, 2508, 2601, 2669
BfmI	CTRYAG	4 cut(s)	1660, 2166, 2436, 2751
BfuAI	ACCTGC	3 cut(s)	14, 2524, 2770
BfuI	GTATCC	4 cut(s)	1030, 2053, 2220, 2731
BglII	AGATCT	2 cut(s)	120, 1148
BmcAI	AGTACT	1 cut(s)	1297
Bme1390I	CCNGG	4 cut(s)	762, 2180, 2472, 2790
Bme18I	GGWCC	1 cut(s)	1978
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmeT110I	CYCGRG	1 cut(s)	116
BmgBI	CACGTC	2 cut(s)	283, 455
BmgT120I	GGNCC	2 cut(s)	114, 1978
BmiI	GGNNCC	6 cut(s)	271, 397, 690, 1161, 1951, 2610
BmrFI	CCNGG	4 cut(s)	762, 2180, 2472, 2790
BmsI	GCATC	5 cut(s)	187, 420, 592, 1272, 2807
BmtI	GCTAGC	1 cut(s)	2672
BpiI	GAAGAC	3 cut(s)	352, 461, 950
BpmI	CTGGAG	2 cut(s)	486, 744
Bpu10I	CCTNAGC	2 cut(s)	2616, 2835
BpuEI	CTTGAG	5 cut(s)	380, 532, 1906, 2248, 2713
BsaBI	GATNNNNATC	1 cut(s)	2797
BsaHI	GRCGYC	2 cut(s)	881, 1790
BsaI	GGTCTC	1 cut(s)	2691
BsaJI	CCNNGG	7 cut(s)	259, 761, 1252, 1756, 1945, 2471, 2805
BsaWI	WCCGGW	2 cut(s)	58, 872
Bsc4I	CCNNNNNNNGG	6 cut(s)	1083, 1178, 1258, 1665, 2602, 2768
Bse118I	RCCGGY	1 cut(s)	2572
Bse1I	ACTGG	9 cut(s)	195, 354, 713, 729, 798, 1067, 1885, 2210, 2785
Bse21I	CCTNAGG	1 cut(s)	1173
Bse3DI	GCAATG	3 cut(s)	197, 1956, 1968
Bse8I	GATNNNNATC	1 cut(s)	2797
BseAI	TCCGGA	2 cut(s)	58, 872
BseBI	CCWGG	4 cut(s)	762, 2180, 2472, 2790
BseDI	CCNNGG	7 cut(s)	259, 761, 1252, 1756, 1945, 2471, 2805
BseGI	GGATG	2 cut(s)	547, 772
BseJI	GATNNNNATC	1 cut(s)	2797
BseLI	CCNNNNNNNGG	6 cut(s)	1083, 1178, 1258, 1665, 2602, 2768
BseMI	GCAATG	3 cut(s)	197, 1956, 1968
BseMII	CTCAG	8 cut(s)	720, 831, 1037, 1187, 1767, 1806, 2630, 2849
BseNI	ACTGG	9 cut(s)	195, 354, 713, 729, 798, 1067, 1885, 2210, 2785
BseRI	GAGGAG	1 cut(s)	2823
BseSI	GKGCMC	1 cut(s)	1954
BseX3I	CGGCCG	1 cut(s)	2364
BseXI	GCAGC	9 cut(s)	181, 480, 724, 1150, 1439, 1683, 1686, 1834, 2422
BseYI	CCCAGC	1 cut(s)	2596
BsgI	GTGCAG	2 cut(s)	566, 723
Bsh1285I	CGRYCG	1 cut(s)	2367
BshNI	GGYRCC	2 cut(s)	1159, 1949
BsiEI	CGRYCG	1 cut(s)	2367
BsiHKAI	GWGCWC	4 cut(s)	20, 651, 1222, 2727
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	4 cut(s)	59, 686, 873, 2573
BslFI	GGGAC	4 cut(s)	37, 119, 1248, 1681
BslI	CCNNNNNNNGG	6 cut(s)	1083, 1178, 1258, 1665, 2602, 2768
BsmAI	GTCTC	8 cut(s)	424, 533, 838, 872, 1499, 1807, 2474, 2691
BsmBI	CGTCTC	1 cut(s)	872
BsmFI	GGGAC	4 cut(s)	37, 119, 1248, 1681
BsmI	GAATGC	1 cut(s)	2237
Bso31I	GGTCTC	1 cut(s)	2691
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	5 cut(s)	20, 651, 1222, 1954, 2727
Bsp13I	TCCGGA	2 cut(s)	58, 872
Bsp1407I	TGTACA	1 cut(s)	909
Bsp19I	CCATGG	2 cut(s)	1252, 2805
BspACI	CCGC	4 cut(s)	1106, 1665, 2023, 2112
BspCNI	CTCAG	8 cut(s)	719, 832, 1038, 1186, 1768, 1807, 2629, 2848
BspEI	TCCGGA	2 cut(s)	58, 872
BspLI	GGNNCC	6 cut(s)	271, 397, 690, 1161, 1951, 2610
BspMAI	CTGCAG	2 cut(s)	2170, 2440
BspMI	ACCTGC	3 cut(s)	14, 2524, 2770
BspOI	GCTAGC	1 cut(s)	2672
BspPI	GGATC	5 cut(s)	264, 277, 812, 2779, 2800
BspT107I	GGYRCC	2 cut(s)	1159, 1949
BspTNI	GGTCTC	1 cut(s)	2691
BsrDI	GCAATG	3 cut(s)	197, 1956, 1968
BsrFI	RCCGGY	1 cut(s)	2572
BsrGI	TGTACA	1 cut(s)	909
BsrI	ACTGG	9 cut(s)	195, 354, 713, 729, 798, 1067, 1885, 2210, 2785
BssAI	RCCGGY	1 cut(s)	2572
BssECI	CCNNGG	7 cut(s)	259, 761, 1252, 1756, 1945, 2471, 2805
BssNAI	GTATAC	1 cut(s)	1401
BssNI	GRCGYC	2 cut(s)	881, 1790
BssSI	CACGAG	1 cut(s)	2004
BssT1I	CCWWGG	5 cut(s)	259, 1252, 1756, 1945, 2805
Bst1107I	GTATAC	1 cut(s)	1401
Bst2BI	CACGAG	1 cut(s)	2004
Bst2UI	CCWGG	4 cut(s)	762, 2180, 2472, 2790
Bst4CI	ACNGT	8 cut(s)	249, 808, 1033, 1272, 1409, 1558, 2347, 2854
Bst6I	CTCTTC	7 cut(s)	159, 318, 1362, 1561, 1566, 2637, 2752
BstACI	GRCGYC	2 cut(s)	881, 1790
BstAUI	TGTACA	1 cut(s)	909
BstC8I	GCNNGC	6 cut(s)	1020, 1327, 1491, 1694, 2110, 2670
BstDSI	CCRYGG	2 cut(s)	1252, 2805
BstF5I	GGATG	2 cut(s)	547, 772
BstHHI	GCGC	1 cut(s)	1944
BstMAI	GTCTC	8 cut(s)	424, 533, 838, 872, 1499, 1807, 2474, 2691
BstMCI	CGRYCG	1 cut(s)	2367
BstNI	CCWGG	4 cut(s)	762, 2180, 2472, 2790
BstNSI	RCATGY	1 cut(s)	1835
BstSCI	CCNGG	4 cut(s)	760, 2178, 2470, 2788
BstSFI	CTRYAG	4 cut(s)	1660, 2166, 2436, 2751
BstSLI	GKGCMC	1 cut(s)	1954
BstV1I	GCAGC	9 cut(s)	181, 480, 724, 1150, 1439, 1683, 1686, 1834, 2422
BstV2I	GAAGAC	3 cut(s)	352, 461, 950
BstX2I	RGATCY	5 cut(s)	120, 269, 817, 1148, 2792
BstYI	RGATCY	5 cut(s)	120, 269, 817, 1148, 2792
BstZ17I	GTATAC	1 cut(s)	1401
BstZI	CGGCCG	1 cut(s)	2364
Bsu36I	CCTNAGG	1 cut(s)	1173
BsuI	GTATCC	4 cut(s)	1030, 2053, 2220, 2731
BtgI	CCRYGG	2 cut(s)	1252, 2805
BtrI	CACGTC	2 cut(s)	283, 455
BtsCI	GGATG	2 cut(s)	547, 772
BtsI	GCAGTG	3 cut(s)	2163, 2175, 2379
BveI	ACCTGC	3 cut(s)	14, 2524, 2770
Cac8I	GCNNGC	6 cut(s)	1020, 1327, 1491, 1694, 2110, 2670
CaiI	CAGNNNCTG	5 cut(s)	1699, 2299, 2567, 2780, 2795
CfoI	GCGC	1 cut(s)	1944
Cfr10I	RCCGGY	1 cut(s)	2572
Cfr13I	GGNCC	2 cut(s)	114, 1978
CseI	GACGC	4 cut(s)	121, 1798, 2114, 2745
Csp6I	GTAC	6 cut(s)	910, 1296, 1771, 1878, 2203, 2848
CviQI	GTAC	6 cut(s)	910, 1296, 1771, 1878, 2203, 2848
DraIII	CACNNNGTG	1 cut(s)	2856
DriI	GACNNNNNGTC	1 cut(s)	247
EaeI	YGGCCR	2 cut(s)	2364, 2802
EagI	CGGCCG	1 cut(s)	2364
Eam1104I	CTCTTC	7 cut(s)	159, 318, 1362, 1561, 1566, 2637, 2752
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EarI	CTCTTC	7 cut(s)	159, 318, 1362, 1561, 1566, 2637, 2752
EciI	GGCGGA	1 cut(s)	2127
Ecl136II	GAGCTC	1 cut(s)	18
EclXI	CGGCCG	1 cut(s)	2364
Eco130I	CCWWGG	5 cut(s)	259, 1252, 1756, 1945, 2805
Eco24I	GRGCYC	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	2691
Eco47I	GGWCC	1 cut(s)	1978
Eco52I	CGGCCG	1 cut(s)	2364
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	4 cut(s)	834, 962, 1905, 2472
Eco81I	CCTNAGG	1 cut(s)	1173
Eco88I	CYCGRG	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	2097
EcoRII	CCWGG	4 cut(s)	760, 2178, 2470, 2788
EcoT14I	CCWWGG	5 cut(s)	259, 1252, 1756, 1945, 2805
EcoT22I	ATGCAT	1 cut(s)	1648
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	5 cut(s)	259, 1252, 1756, 1945, 2805
Esp3I	CGTCTC	1 cut(s)	872
FalI	AAGNNNNNCTT	4 cut(s)	591, 623, 881, 913
FaqI	GGGAC	4 cut(s)	37, 119, 1248, 1681
FauI	CCCGC	2 cut(s)	1099, 1658
FauNDI	CATATG	2 cut(s)	1495, 2305
FblI	GTMKAC	2 cut(s)	31, 1400
FokI	GGATG	2 cut(s)	554, 779
FriOI	GRGCYC	1 cut(s)	20
FspBI	CTAG	8 cut(s)	1112, 1479, 1751, 1995, 2418, 2508, 2601, 2669
GlaI	GCGC	1 cut(s)	1943
GsaI	CCCAGC	1 cut(s)	2600
GsuI	CTGGAG	2 cut(s)	486, 744
HapII	CCGG	4 cut(s)	59, 686, 873, 2573
HgaI	GACGC	4 cut(s)	121, 1798, 2114, 2745
HhaI	GCGC	1 cut(s)	1944
Hin1I	GRCGYC	2 cut(s)	881, 1790
Hin6I	GCGC	1 cut(s)	1942
HinP1I	GCGC	1 cut(s)	1942
HincII	GTYRAC	2 cut(s)	894, 2394
HindII	GTYRAC	2 cut(s)	894, 2394
HindIII	AAGCTT	1 cut(s)	654
HinfI	GANTC	9 cut(s)	50, 242, 293, 725, 1054, 1236, 1817, 2000, 2525
HpaII	CCGG	4 cut(s)	59, 686, 873, 2573
HphI	GGTGA	4 cut(s)	242, 1433, 2235, 2751
Hpy166II	GTNNAC	7 cut(s)	32, 233, 894, 1401, 1448, 2394, 2850
Hpy8I	GTNNAC	7 cut(s)	32, 233, 894, 1401, 1448, 2394, 2850
HpyCH4III	ACNGT	8 cut(s)	249, 808, 1033, 1272, 1409, 1558, 2347, 2854
HpyCH4IV	ACGT	3 cut(s)	282, 454, 881
HpySE526I	ACGT	3 cut(s)	282, 454, 881
Hsp92I	GRCGYC	2 cut(s)	881, 1790
HspAI	GCGC	1 cut(s)	1942
Kpn2I	TCCGGA	2 cut(s)	58, 872
LmnI	GCTCC	7 cut(s)	61, 263, 582, 694, 763, 2012, 2078
Lsp1109I	GCAGC	9 cut(s)	181, 480, 724, 1150, 1439, 1683, 1686, 1834, 2422
LweI	GCATC	5 cut(s)	187, 420, 592, 1272, 2807
MaeI	CTAG	8 cut(s)	1112, 1479, 1751, 1995, 2418, 2508, 2601, 2669
MaeII	ACGT	3 cut(s)	282, 454, 881
MaeIII	GTNAC	4 cut(s)	802, 2122, 2161, 2757
MfeI	CAATTG	2 cut(s)	333, 2027
MflI	RGATCY	5 cut(s)	120, 269, 817, 1148, 2792
MhlI	GDGCHC	5 cut(s)	20, 651, 1222, 1954, 2727
MlyI	GAGTC	4 cut(s)	59, 236, 1230, 1826
MmeI	TCCRAC	3 cut(s)	108, 1438, 1990
Mph1103I	ATGCAT	1 cut(s)	1648
MroI	TCCGGA	2 cut(s)	58, 872
MroXI	GAANNNNTTC	1 cut(s)	2503
MseI	TTAA	7 cut(s)	237, 435, 665, 1067, 1386, 2277, 2631
MslI	CAYNNNNRTG	2 cut(s)	1961, 2168
MspA1I	CMGCKG	3 cut(s)	1106, 1430, 1696
MspI	CCGG	4 cut(s)	59, 686, 873, 2573
MspR9I	CCNGG	4 cut(s)	762, 2180, 2472, 2790
MunI	CAATTG	2 cut(s)	333, 2027
Mva1269I	GAATGC	1 cut(s)	2237
MvaI	CCWGG	4 cut(s)	762, 2180, 2472, 2790
NcoI	CCATGG	2 cut(s)	1252, 2805
NdeI	CATATG	2 cut(s)	1495, 2305
NheI	GCTAGC	1 cut(s)	2668
NlaIV	GGNNCC	6 cut(s)	271, 397, 690, 1161, 1951, 2610
NmuCI	GTSAC	4 cut(s)	802, 2122, 2161, 2757
NsiI	ATGCAT	1 cut(s)	1648
NspI	RCATGY	1 cut(s)	1835
OliI	CACNNNNGTG	1 cut(s)	2168
PaqCI	CACCTGC	2 cut(s)	14, 2770
PciI	ACATGT	1 cut(s)	1831
PctI	GAATGC	1 cut(s)	2237
PdmI	GAANNNNTTC	1 cut(s)	2503
PfeI	GAWTC	5 cut(s)	293, 725, 1054, 2000, 2525
PflMI	CCANNNNNTGG	1 cut(s)	1083
PleI	GAGTC	4 cut(s)	58, 236, 1230, 1825
PpsI	GAGTC	4 cut(s)	58, 236, 1230, 1825
PscI	ACATGT	1 cut(s)	1831
PshBI	ATTAAT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	4 cut(s)	760, 2178, 2470, 2788
PspFI	CCCAGC	1 cut(s)	2596
PspGI	CCWGG	4 cut(s)	760, 2178, 2470, 2788
PspN4I	GGNNCC	6 cut(s)	271, 397, 690, 1161, 1951, 2610
PspPI	GGNCC	2 cut(s)	114, 1978
PstI	CTGCAG	2 cut(s)	2170, 2440
PstNI	CAGNNNCTG	5 cut(s)	1699, 2299, 2567, 2780, 2795
PsuI	RGATCY	5 cut(s)	120, 269, 817, 1148, 2792
PvuII	CAGCTG	2 cut(s)	1430, 1696
RsaI	GTAC	6 cut(s)	911, 1297, 1772, 1879, 2204, 2849
RsaNI	GTAC	6 cut(s)	910, 1296, 1771, 1878, 2203, 2848
RseI	CAYNNNNRTG	2 cut(s)	1961, 2168
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	7 cut(s)	237, 435, 665, 1067, 1386, 2277, 2631
Sau96I	GGNCC	2 cut(s)	114, 1978
ScaI	AGTACT	1 cut(s)	1297
SchI	GAGTC	4 cut(s)	59, 236, 1230, 1826
ScrFI	CCNGG	4 cut(s)	762, 2180, 2472, 2790
SduI	GDGCHC	5 cut(s)	20, 651, 1222, 1954, 2727
SfaNI	GCATC	5 cut(s)	187, 420, 592, 1272, 2807
SfcI	CTRYAG	4 cut(s)	1660, 2166, 2436, 2751
SinI	GGWCC	1 cut(s)	1978
SmiMI	CAYNNNNRTG	2 cut(s)	1961, 2168
SmlI	CTYRAG	5 cut(s)	359, 511, 1885, 2227, 2692
SmoI	CTYRAG	5 cut(s)	359, 511, 1885, 2227, 2692
SsiI	CCGC	4 cut(s)	1106, 1665, 2023, 2112
SspMI	CTAG	8 cut(s)	1112, 1479, 1751, 1995, 2418, 2508, 2601, 2669
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	4 cut(s)	760, 2178, 2470, 2788
StyI	CCWWGG	5 cut(s)	259, 1252, 1756, 1945, 2805
TaaI	ACNGT	8 cut(s)	249, 808, 1033, 1272, 1409, 1558, 2347, 2854
TaiI	ACGT	3 cut(s)	285, 457, 884
TaqI	TCGA	2 cut(s)	343, 1837
TatI	WGTACW	4 cut(s)	909, 1295, 1770, 2847
TauI	GCSGC	1 cut(s)	2026
TfiI	GAWTC	5 cut(s)	293, 725, 1054, 2000, 2525
Tru1I	TTAA	7 cut(s)	237, 435, 665, 1067, 1386, 2277, 2631
Tru9I	TTAA	7 cut(s)	237, 435, 665, 1067, 1386, 2277, 2631
TseFI	GTSAC	4 cut(s)	802, 2122, 2161, 2757
TseI	GCWGC	9 cut(s)	194, 493, 737, 1138, 1427, 1696, 1699, 1847, 2435
Tsp45I	GTSAC	4 cut(s)	802, 2122, 2161, 2757
TspGWI	ACGGA	1 cut(s)	2750
Van91I	CCANNNNNTGG	1 cut(s)	1083
VpaK11BI	GGWCC	1 cut(s)	1978
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	4 cut(s)	864, 1091, 1863, 2097
XceI	RCATGY	1 cut(s)	1835
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2071
XmiI	GTMKAC	2 cut(s)	31, 1400
XmnI	GAANNNNTTC	1 cut(s)	2503
XspI	CTAG	8 cut(s)	1112, 1479, 1751, 1995, 2418, 2508, 2601, 2669
ZraI	GACGTC	1 cut(s)	882
ZrmI	AGTACT	1 cut(s)	1297
Zsp2I	ATGCAT	1 cut(s)	1648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.