Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002413.1

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Forward (+)

47306 .. 54466

Gene Structure 7161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002413.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3000 bp

atggcgaccttagtgagctcggcaggtggtctacttgccatgctgaacgagtcccgtccagagctaaagctctacgctttgtccaacctcaacaaattggttgatgggttttggcccgagatctccaccagcgtccccatcatagaaagtttgtatgaagatgaagagtttggtcagcatcaaagacaactggctgcattgcttgtttcaaaggttttctactatttgggtgaacttaatgactcactgtcctatgcccttggagctggatccttatttgacgtgtcagaagattcttattatattcatactcttcttgctaaagctattgatgagtatgccagtcttaagtctaaggcagcagaatcaaatgctgaagcagcaaatgtggatcctaggttggaggctattgtggagagaatgctgaacaagtgtatcctggatgggaaatatcaacaagctatggggattgcaattgaatgtcgaagactggataaacttgaggaagcaatcataaagagtgataatgttcaaggaaccctgtcatattgcatcaatgtctctcattcatatattaatcttagagaatacagacgtgaggtgcttcgtcttcttgtcagagtgtatcaaaagctgccttctccagattacttgagcatttgtcagtgtctcatgttcttggatgaaccagaaggtgttgcaaccatattggagaagctcctgcgctctgaaaacaaggaagatgcacttttggcatttcaaatagcctttgaccttgttgagaatgagcaccaagcttttctcttaaatgtaagaaatcgccttccagctcccaagactaaaacctcagagccggtgcaaccagaatccagtgaagctgcacaaaatgaaggttctgctccaggggatgttcaaatgacagatggaagttctactaccagtgtgactgtgcctgaagatccaagtgaagtgatgtattccgagagactgacaaaaatcaaaggaattttgtccggagagacgtcgataaagttgaccttacaatttctgtacagccataacaagtccgatctgcttattctgaagacaataaagcagtctgttgagatgagaaatagtgtatgccatagtgcaactatttatgcaaatgcaattatgcacgctggaacaactgtggatacatttctgagggagaatctcgactggttaagcagagccactaattgggcaaaattcagtgcaacagcggggctaggtgttattcacagaggccacttgcagcagggaagatctctgatggcaccttacttgcctcagggtggggctggtggtggtggaagtccgtactcggaaggtggtgctctgtatgctctgggactcattcatgccaaccatggcgagggcatcaaacagttccttcgtgatagcctacgcagtactaatgtggaggttattcaacatggggcgtgcttgggtcttggcttgtcagctttaggaactgctgatgaagagatttatgatgacattaaaagtgtgctgtatactgacagtgctgttgctggtgaagcagctggtattagtatgggtttactcatggttggaactgcaagtgagaaggctagtgaaatgctcgcatatgcacatgagacacaacacgaaaagatcatcagagggttggcattggggattgccctgacggtatatggaagagaagaggaagcagacacgctaattgaacagatgacaagagatcaagaccccatattgcgttatggtggtatgtatgcattggcattggcctatagtgggacagcaaacaacaaagctattcgccagctgctgcattttgctgtgtcagatgtgagtgatgatgttaggagaactgctgttctagcccttggttttgtcttgtactctgagccagagcagacgcctcgtattgtctccctgctatctgagtcctacaacccacatgttcgatatggtgctgctcttgcagttggaatttcgtgtgctggtactggcttgagtgaggccatatctttgttagagcctctgacttcagatgttgttgattttgtgcgccaaggtgccctcattgcaatggctatggtcatggtccagattagtgaagctagtgattctcgagttggagcttttaggcggcaattggagaaaataattcttgataagcatgaggataccatgagcaaaatgggagcaatcttggcctctggaattcttgacgctggcggaaggaatgtgacaataagactgctttctaagacaaaacatgataaagtcactgcagtggttggccttgctgttttcagccaattttggtactggtatcccctcatatatttcttgagcttggcattctcaccaacagctttgataggattgaactatgaccttaaagttccgaagtttcagttcctgtcatatgcaaaaccttctctgtttgaatatcctaaaccgaccactgtggcaaccactacatcggccgtgaaactccccactgctgttctgtcaacatcagcaaaggccaccaaagctagggccaagaaagaagctgcagatcagaaggccaatcctgaaaagacaaatcctgggggagagacatcttcaggaaagggaaaatcttctagtgagaaagatggggattcaatgcaggttgatagctcaacagagaagaaatcagaacctgaaccggcttttgagtttttgaccaacccagctagggtggttcctgctcaggaggaatacattaagtttctggaagagagcagatatgtgcctgtcaagctagcaccatcaggatttgttctcttgagagaccaaagacctactgaaccagaagtgctctcacttacggatacaccctcttctacagtgtcacctgccggtggatcagcagctggacagccaggatctgcatcggccatggcagttgatgaagaacctcaacctcctcagccttttgagtacaccgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

999

Amino Acids

108.58

Weight (kDa)

5.23

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	14, 2911
AatII	GACGTC	1 cut(s)	1025
Acc36I	ACCTGC	3 cut(s)	14, 2665, 2911
AccB1I	GGYRCC	2 cut(s)	1300, 2090
AccB7I	CCANNNNNTGG	1 cut(s)	1224
AccI	GTMKAC	2 cut(s)	31, 1541
AccIII	TCCGGA	1 cut(s)	1013
AciI	CCGC	3 cut(s)	1247, 2164, 2253
AclWI	GGATC	7 cut(s)	264, 277, 386, 399, 953, 2920, 2941
AcoI	YGGCCR	2 cut(s)	2505, 2943
AcsI	RAATTY	4 cut(s)	1005, 1232, 2004, 2238
AcuI	CTGAAG	5 cut(s)	396, 975, 1103, 2046, 2613
AcyI	GRCGYC	2 cut(s)	1022, 1931
AdeI	CACNNNGTG	1 cut(s)	2997
AfaI	GTAC	7 cut(s)	1052, 1346, 1438, 1913, 2020, 2345, 2990
AfiI	CCNNNNNNNGG	7 cut(s)	1224, 1319, 1399, 1806, 2559, 2743, 2909
AflII	CTTAAG	1 cut(s)	347
AflIII	ACRYGT	2 cut(s)	282, 1972
AhdI	GACNNNNNGTC	1 cut(s)	247
AjiI	CACGTC	2 cut(s)	283, 596
AjnI	CCWGG	4 cut(s)	438, 901, 2611, 2929
AleI	CACNNNNGTG	1 cut(s)	2309
Alw21I	GWGCWC	4 cut(s)	20, 792, 1363, 2868
Alw26I	GTCTC	8 cut(s)	565, 674, 979, 1013, 1640, 1948, 2615, 2832
AlwI	GGATC	7 cut(s)	264, 277, 386, 399, 953, 2920, 2941
AlwNI	CAGNNNCTG	5 cut(s)	1840, 2440, 2708, 2921, 2936
Ama87I	CYCGRG	2 cut(s)	116, 2145
Aor13HI	TCCGGA	1 cut(s)	1013
ApoI	RAATTY	4 cut(s)	1005, 1232, 2004, 2238
AseI	ATTAAT	1 cut(s)	576
Asp700I	GAANNNNTTC	1 cut(s)	2644
AspA2I	CCTAGG	1 cut(s)	395
AspLEI	GCGC	2 cut(s)	726, 2085
AspS9I	GGNCC	3 cut(s)	114, 2119, 2562
AsuHPI	GGTGA	4 cut(s)	242, 1574, 2376, 2892
AsuNHI	GCTAGC	1 cut(s)	2809
AvaI	CYCGRG	2 cut(s)	116, 2145
AvaII	GGWCC	1 cut(s)	2119
AvrII	CCTAGG	1 cut(s)	395
AxyI	CCTNAGG	1 cut(s)	1314
BaeGI	GKGCMC	1 cut(s)	2095
BaeI	ACNNNNGTAYC	2 cut(s)	418, 451
BamHI	GGATCC	2 cut(s)	269, 391
BanI	GGYRCC	2 cut(s)	1300, 2090
BanII	GRGCYC	1 cut(s)	20
BarI	GAAGNNNNNNTAC	2 cut(s)	919, 951
BbsI	GAAGAC	3 cut(s)	493, 602, 1091
Bbv12I	GWGCWC	4 cut(s)	20, 792, 1363, 2868
BbvCI	CCTCAGC	1 cut(s)	2976
BccI	CCATC	7 cut(s)	98, 146, 437, 917, 1291, 2654, 2824
BceAI	ACGGC	1 cut(s)	2492
BcgI	CGANNNNNNTGC	2 cut(s)	1916, 1950
BciT130I	CCWGG	4 cut(s)	440, 903, 2613, 2931
BciVI	GTATCC	5 cut(s)	446, 1171, 2194, 2361, 2872
BcoDI	GTCTC	8 cut(s)	565, 674, 979, 1013, 1640, 1948, 2615, 2832
BfaI	CTAG	9 cut(s)	396, 1253, 1620, 1892, 2136, 2559, 2649, 2742, 2810
BfmI	CTRYAG	4 cut(s)	1801, 2307, 2577, 2892
BfrI	CTTAAG	1 cut(s)	347
BfuAI	ACCTGC	3 cut(s)	14, 2665, 2911
BfuI	GTATCC	5 cut(s)	446, 1171, 2194, 2361, 2872
BglII	AGATCT	2 cut(s)	120, 1289
BlnI	CCTAGG	1 cut(s)	395
BmcAI	AGTACT	1 cut(s)	1438
Bme1390I	CCNGG	4 cut(s)	440, 903, 2613, 2931
Bme18I	GGWCC	1 cut(s)	2119
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmeT110I	CYCGRG	2 cut(s)	116, 2145
BmgBI	CACGTC	2 cut(s)	283, 596
BmgT120I	GGNCC	3 cut(s)	114, 2119, 2562
BmiI	GGNNCC	6 cut(s)	271, 393, 538, 1302, 2092, 2751
BmrFI	CCNGG	4 cut(s)	440, 903, 2613, 2931
BmsI	GCATC	5 cut(s)	187, 561, 733, 1413, 2948
BmtI	GCTAGC	1 cut(s)	2813
BpiI	GAAGAC	3 cut(s)	493, 602, 1091
BpmI	CTGGAG	2 cut(s)	627, 885
Bpu10I	CCTNAGC	2 cut(s)	2757, 2976
BpuEI	CTTGAG	5 cut(s)	521, 673, 2047, 2389, 2854
BsaBI	GATNNNNATC	1 cut(s)	2938
BsaHI	GRCGYC	2 cut(s)	1022, 1931
BsaI	GGTCTC	1 cut(s)	2832
BsaJI	CCNNGG	8 cut(s)	259, 395, 902, 1393, 1897, 2086, 2612, 2946
BsaWI	WCCGGW	1 cut(s)	1013
Bsc4I	CCNNNNNNNGG	7 cut(s)	1224, 1319, 1399, 1806, 2559, 2743, 2909
Bse118I	RCCGGY	3 cut(s)	853, 2713, 2906
Bse1I	ACTGG	8 cut(s)	195, 342, 495, 870, 939, 1208, 2026, 2351
Bse21I	CCTNAGG	1 cut(s)	1314
Bse3DI	GCAATG	3 cut(s)	197, 2097, 2109
Bse8I	GATNNNNATC	1 cut(s)	2938
BseAI	TCCGGA	1 cut(s)	1013
BseBI	CCWGG	4 cut(s)	440, 903, 2613, 2931
BseDI	CCNNGG	8 cut(s)	259, 395, 902, 1393, 1897, 2086, 2612, 2946
BseGI	GGATG	3 cut(s)	448, 688, 913
BseJI	GATNNNNATC	1 cut(s)	2938
BseLI	CCNNNNNNNGG	7 cut(s)	1224, 1319, 1399, 1806, 2559, 2743, 2909
BseMI	GCAATG	3 cut(s)	197, 2097, 2109
BseMII	CTCAG	7 cut(s)	861, 1178, 1328, 1908, 1947, 2771, 2990
BseNI	ACTGG	8 cut(s)	195, 342, 495, 870, 939, 1208, 2026, 2351
BseRI	GAGGAG	1 cut(s)	2964
BseSI	GKGCMC	1 cut(s)	2095
BseX3I	CGGCCG	1 cut(s)	2505
BseYI	CCCAGC	1 cut(s)	2737
BsgI	GTGCAG	1 cut(s)	864
Bsh1285I	CGRYCG	1 cut(s)	2508
BshNI	GGYRCC	2 cut(s)	1300, 2090
BsiEI	CGRYCG	1 cut(s)	2508
BsiHKAI	GWGCWC	4 cut(s)	20, 792, 1363, 2868
BsiHKCI	CYCGRG	2 cut(s)	116, 2145
BsiSI	CCGG	4 cut(s)	854, 1014, 2714, 2907
BslFI	GGGAC	4 cut(s)	37, 119, 1389, 1822
BslI	CCNNNNNNNGG	7 cut(s)	1224, 1319, 1399, 1806, 2559, 2743, 2909
BsmAI	GTCTC	8 cut(s)	565, 674, 979, 1013, 1640, 1948, 2615, 2832
BsmBI	CGTCTC	1 cut(s)	1013
BsmFI	GGGAC	4 cut(s)	37, 119, 1389, 1822
BsmI	GAATGC	2 cut(s)	426, 2378
Bso31I	GGTCTC	1 cut(s)	2832
BsoBI	CYCGRG	2 cut(s)	116, 2145
Bsp1286I	GDGCHC	5 cut(s)	20, 792, 1363, 2095, 2868
Bsp13I	TCCGGA	1 cut(s)	1013
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp19I	CCATGG	2 cut(s)	1393, 2946
BspACI	CCGC	3 cut(s)	1247, 2164, 2253
BspCNI	CTCAG	7 cut(s)	860, 1179, 1327, 1909, 1948, 2770, 2989
BspEI	TCCGGA	1 cut(s)	1013
BspLI	GGNNCC	6 cut(s)	271, 393, 538, 1302, 2092, 2751
BspMAI	CTGCAG	2 cut(s)	2311, 2581
BspMI	ACCTGC	3 cut(s)	14, 2665, 2911
BspOI	GCTAGC	1 cut(s)	2813
BspPI	GGATC	7 cut(s)	264, 277, 386, 399, 953, 2920, 2941
BspT107I	GGYRCC	2 cut(s)	1300, 2090
BspTI	CTTAAG	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	2832
BsrDI	GCAATG	3 cut(s)	197, 2097, 2109
BsrFI	RCCGGY	3 cut(s)	853, 2713, 2906
BsrGI	TGTACA	1 cut(s)	1050
BsrI	ACTGG	8 cut(s)	195, 342, 495, 870, 939, 1208, 2026, 2351
BssAI	RCCGGY	3 cut(s)	853, 2713, 2906
BssECI	CCNNGG	8 cut(s)	259, 395, 902, 1393, 1897, 2086, 2612, 2946
BssNAI	GTATAC	1 cut(s)	1542
BssNI	GRCGYC	2 cut(s)	1022, 1931
BssT1I	CCWWGG	6 cut(s)	259, 395, 1393, 1897, 2086, 2946
Bst1107I	GTATAC	1 cut(s)	1542
Bst2UI	CCWGG	4 cut(s)	440, 903, 2613, 2931
Bst4CI	ACNGT	9 cut(s)	249, 949, 1174, 1413, 1550, 1699, 2488, 2896, 2995
Bst6I	CTCTTC	7 cut(s)	159, 318, 1503, 1702, 1707, 2778, 2893
BstACI	GRCGYC	2 cut(s)	1022, 1931
BstAFI	CTTAAG	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	1050
BstC8I	GCNNGC	6 cut(s)	1161, 1468, 1632, 1835, 2251, 2811
BstDSI	CCRYGG	2 cut(s)	1393, 2946
BstF5I	GGATG	3 cut(s)	448, 688, 913
BstHHI	GCGC	2 cut(s)	726, 2085
BstMAI	GTCTC	8 cut(s)	565, 674, 979, 1013, 1640, 1948, 2615, 2832
BstMCI	CGRYCG	1 cut(s)	2508
BstNI	CCWGG	4 cut(s)	440, 903, 2613, 2931
BstNSI	RCATGY	1 cut(s)	1976
BstSCI	CCNGG	4 cut(s)	438, 901, 2611, 2929
BstSFI	CTRYAG	4 cut(s)	1801, 2307, 2577, 2892
BstSLI	GKGCMC	1 cut(s)	2095
BstV2I	GAAGAC	3 cut(s)	493, 602, 1091
BstX2I	RGATCY	6 cut(s)	120, 269, 391, 958, 1289, 2933
BstYI	RGATCY	6 cut(s)	120, 269, 391, 958, 1289, 2933
BstZ17I	GTATAC	1 cut(s)	1542
BstZI	CGGCCG	1 cut(s)	2505
Bsu36I	CCTNAGG	1 cut(s)	1314
BsuI	GTATCC	5 cut(s)	446, 1171, 2194, 2361, 2872
BtgI	CCRYGG	2 cut(s)	1393, 2946
BtrI	CACGTC	2 cut(s)	283, 596
BtsCI	GGATG	3 cut(s)	448, 688, 913
BtsI	GCAGTG	3 cut(s)	2304, 2316, 2520
BveI	ACCTGC	3 cut(s)	14, 2665, 2911
Cac8I	GCNNGC	6 cut(s)	1161, 1468, 1632, 1835, 2251, 2811
CaiI	CAGNNNCTG	5 cut(s)	1840, 2440, 2708, 2921, 2936
CfoI	GCGC	2 cut(s)	726, 2085
Cfr10I	RCCGGY	3 cut(s)	853, 2713, 2906
Cfr13I	GGNCC	3 cut(s)	114, 2119, 2562
CseI	GACGC	3 cut(s)	121, 1939, 2255
Csp6I	GTAC	7 cut(s)	1051, 1345, 1437, 1912, 2019, 2344, 2989
CviQI	GTAC	7 cut(s)	1051, 1345, 1437, 1912, 2019, 2344, 2989
DraIII	CACNNNGTG	1 cut(s)	2997
DriI	GACNNNNNGTC	1 cut(s)	247
EaeI	YGGCCR	2 cut(s)	2505, 2943
EagI	CGGCCG	1 cut(s)	2505
Eam1104I	CTCTTC	7 cut(s)	159, 318, 1503, 1702, 1707, 2778, 2893
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EarI	CTCTTC	7 cut(s)	159, 318, 1503, 1702, 1707, 2778, 2893
EciI	GGCGGA	1 cut(s)	2268
Ecl136II	GAGCTC	1 cut(s)	18
EclXI	CGGCCG	1 cut(s)	2505
Eco130I	CCWWGG	6 cut(s)	259, 395, 1393, 1897, 2086, 2946
Eco24I	GRGCYC	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	2832
Eco47I	GGWCC	1 cut(s)	2119
Eco52I	CGGCCG	1 cut(s)	2505
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	5 cut(s)	396, 975, 1103, 2046, 2613
Eco81I	CCTNAGG	1 cut(s)	1314
Eco88I	CYCGRG	2 cut(s)	116, 2145
EcoICRI	GAGCTC	1 cut(s)	18
EcoRI	GAATTC	1 cut(s)	2238
EcoRII	CCWGG	4 cut(s)	438, 901, 2611, 2929
EcoT14I	CCWWGG	6 cut(s)	259, 395, 1393, 1897, 2086, 2946
EcoT22I	ATGCAT	1 cut(s)	1789
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	6 cut(s)	259, 395, 1393, 1897, 2086, 2946
Esp3I	CGTCTC	1 cut(s)	1013
FalI	AAGNNNNNCTT	4 cut(s)	732, 764, 1022, 1054
FaqI	GGGAC	4 cut(s)	37, 119, 1389, 1822
FauI	CCCGC	1 cut(s)	1240
FauNDI	CATATG	2 cut(s)	1636, 2446
FblI	GTMKAC	2 cut(s)	31, 1541
FokI	GGATG	3 cut(s)	455, 695, 920
FriOI	GRGCYC	1 cut(s)	20
FspBI	CTAG	9 cut(s)	396, 1253, 1620, 1892, 2136, 2559, 2649, 2742, 2810
GlaI	GCGC	2 cut(s)	725, 2084
GsaI	CCCAGC	1 cut(s)	2741
GsuI	CTGGAG	2 cut(s)	627, 885
HapII	CCGG	4 cut(s)	854, 1014, 2714, 2907
HgaI	GACGC	3 cut(s)	121, 1939, 2255
HhaI	GCGC	2 cut(s)	726, 2085
Hin1I	GRCGYC	2 cut(s)	1022, 1931
Hin6I	GCGC	2 cut(s)	724, 2083
HinP1I	GCGC	2 cut(s)	724, 2083
HincII	GTYRAC	2 cut(s)	1035, 2535
HindII	GTYRAC	2 cut(s)	1035, 2535
HindIII	AAGCTT	1 cut(s)	795
HpaII	CCGG	4 cut(s)	854, 1014, 2714, 2907
HphI	GGTGA	4 cut(s)	242, 1574, 2376, 2892
Hpy166II	GTNNAC	7 cut(s)	32, 233, 1035, 1542, 1589, 2535, 2991
Hpy8I	GTNNAC	7 cut(s)	32, 233, 1035, 1542, 1589, 2535, 2991
Hpy99I	CGWCG	1 cut(s)	1027
HpyCH4III	ACNGT	9 cut(s)	249, 949, 1174, 1413, 1550, 1699, 2488, 2896, 2995
HpyCH4IV	ACGT	3 cut(s)	282, 595, 1022
HpySE526I	ACGT	3 cut(s)	282, 595, 1022
Hsp92I	GRCGYC	2 cut(s)	1022, 1931
HspAI	GCGC	2 cut(s)	724, 2083
Kpn2I	TCCGGA	1 cut(s)	1013
LmnI	GCTCC	6 cut(s)	263, 723, 835, 904, 2153, 2219
LweI	GCATC	5 cut(s)	187, 561, 733, 1413, 2948
MaeI	CTAG	9 cut(s)	396, 1253, 1620, 1892, 2136, 2559, 2649, 2742, 2810
MaeII	ACGT	3 cut(s)	282, 595, 1022
MaeIII	GTNAC	4 cut(s)	943, 2263, 2302, 2898
MfeI	CAATTG	2 cut(s)	474, 2168
MflI	RGATCY	6 cut(s)	120, 269, 391, 958, 1289, 2933
MhlI	GDGCHC	5 cut(s)	20, 792, 1363, 2095, 2868
MlyI	GAGTC	4 cut(s)	59, 236, 1371, 1967
MmeI	TCCRAC	5 cut(s)	108, 381, 1579, 1981, 2131
Mph1103I	ATGCAT	1 cut(s)	1789
MroI	TCCGGA	1 cut(s)	1013
MroXI	GAANNNNTTC	1 cut(s)	2644
MseI	TTAA	8 cut(s)	237, 348, 576, 806, 1208, 1527, 2418, 2772
MslI	CAYNNNNRTG	2 cut(s)	2102, 2309
MspA1I	CMGCKG	4 cut(s)	1247, 1571, 1837, 2921
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	4 cut(s)	854, 1014, 2714, 2907
MspR9I	CCNGG	4 cut(s)	440, 903, 2613, 2931
MunI	CAATTG	2 cut(s)	474, 2168
Mva1269I	GAATGC	2 cut(s)	426, 2378
MvaI	CCWGG	4 cut(s)	440, 903, 2613, 2931
NcoI	CCATGG	2 cut(s)	1393, 2946
NdeI	CATATG	2 cut(s)	1636, 2446
NheI	GCTAGC	1 cut(s)	2809
NlaIV	GGNNCC	6 cut(s)	271, 393, 538, 1302, 2092, 2751
NmuCI	GTSAC	4 cut(s)	943, 2263, 2302, 2898
NsiI	ATGCAT	1 cut(s)	1789
NspI	RCATGY	1 cut(s)	1976
OliI	CACNNNNGTG	1 cut(s)	2309
PaeR7I	CTCGAG	1 cut(s)	2145
PaqCI	CACCTGC	2 cut(s)	14, 2911
PciI	ACATGT	1 cut(s)	1972
PctI	GAATGC	2 cut(s)	426, 2378
PdmI	GAANNNNTTC	1 cut(s)	2644
PfeI	GAWTC	6 cut(s)	293, 365, 866, 1195, 2141, 2666
PflMI	CCANNNNNTGG	1 cut(s)	1224
PfoI	TCCNGGA	1 cut(s)	438
PleI	GAGTC	4 cut(s)	58, 236, 1371, 1966
PpsI	GAGTC	4 cut(s)	58, 236, 1371, 1966
PscI	ACATGT	1 cut(s)	1972
PshBI	ATTAAT	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	4 cut(s)	438, 901, 2611, 2929
PspFI	CCCAGC	1 cut(s)	2737
PspGI	CCWGG	4 cut(s)	438, 901, 2611, 2929
PspN4I	GGNNCC	6 cut(s)	271, 393, 538, 1302, 2092, 2751
PspPI	GGNCC	3 cut(s)	114, 2119, 2562
PstI	CTGCAG	2 cut(s)	2311, 2581
PstNI	CAGNNNCTG	5 cut(s)	1840, 2440, 2708, 2921, 2936
PsuI	RGATCY	6 cut(s)	120, 269, 391, 958, 1289, 2933
PvuII	CAGCTG	3 cut(s)	1571, 1837, 2921
RsaI	GTAC	7 cut(s)	1052, 1346, 1438, 1913, 2020, 2345, 2990
RsaNI	GTAC	7 cut(s)	1051, 1345, 1437, 1912, 2019, 2344, 2989
RseI	CAYNNNNRTG	2 cut(s)	2102, 2309
SacI	GAGCTC	1 cut(s)	20
SaqAI	TTAA	8 cut(s)	237, 348, 576, 806, 1208, 1527, 2418, 2772
Sau96I	GGNCC	3 cut(s)	114, 2119, 2562
ScaI	AGTACT	1 cut(s)	1438
SchI	GAGTC	4 cut(s)	59, 236, 1371, 1967
ScrFI	CCNGG	4 cut(s)	440, 903, 2613, 2931
SduI	GDGCHC	5 cut(s)	20, 792, 1363, 2095, 2868
SfaNI	GCATC	5 cut(s)	187, 561, 733, 1413, 2948
SfcI	CTRYAG	4 cut(s)	1801, 2307, 2577, 2892
Sfr274I	CTCGAG	1 cut(s)	2145
SinI	GGWCC	1 cut(s)	2119
SlaI	CTCGAG	1 cut(s)	2145
SmiMI	CAYNNNNRTG	2 cut(s)	2102, 2309
SmlI	CTYRAG	7 cut(s)	347, 500, 652, 2026, 2145, 2368, 2833
SmoI	CTYRAG	7 cut(s)	347, 500, 652, 2026, 2145, 2368, 2833
SsiI	CCGC	3 cut(s)	1247, 2164, 2253
SspMI	CTAG	9 cut(s)	396, 1253, 1620, 1892, 2136, 2559, 2649, 2742, 2810
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	4 cut(s)	438, 901, 2611, 2929
StyI	CCWWGG	6 cut(s)	259, 395, 1393, 1897, 2086, 2946
TaaI	ACNGT	9 cut(s)	249, 949, 1174, 1413, 1550, 1699, 2488, 2896, 2995
TaiI	ACGT	3 cut(s)	285, 598, 1025
TaqI	TCGA	5 cut(s)	484, 1025, 1200, 1978, 2146
TatI	WGTACW	4 cut(s)	1050, 1436, 1911, 2988
TauI	GCSGC	1 cut(s)	2167
TfiI	GAWTC	6 cut(s)	293, 365, 866, 1195, 2141, 2666
Tru1I	TTAA	8 cut(s)	237, 348, 576, 806, 1208, 1527, 2418, 2772
Tru9I	TTAA	8 cut(s)	237, 348, 576, 806, 1208, 1527, 2418, 2772
TseFI	GTSAC	4 cut(s)	943, 2263, 2302, 2898
Tsp45I	GTSAC	4 cut(s)	943, 2263, 2302, 2898
TspDTI	ATGAA	9 cut(s)	171, 177, 296, 558, 699, 903, 1373, 1521, 2973
TspGWI	ACGGA	2 cut(s)	1332, 2891
Van91I	CCANNNNNTGG	1 cut(s)	1224
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	2119
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	4 cut(s)	1005, 1232, 2004, 2238
XceI	RCATGY	1 cut(s)	1976
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2212
XhoI	CTCGAG	1 cut(s)	2145
XmaJI	CCTAGG	1 cut(s)	395
XmiI	GTMKAC	2 cut(s)	31, 1541
XmnI	GAANNNNTTC	1 cut(s)	2644
XspI	CTAG	9 cut(s)	396, 1253, 1620, 1892, 2136, 2559, 2649, 2742, 2810
ZraI	GACGTC	1 cut(s)	1023
ZrmI	AGTACT	1 cut(s)	1438
Zsp2I	ATGCAT	1 cut(s)	1789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.