Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Forward (+)

591159 .. 597968

Gene Structure 6810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3009 bp

ATGACGACCTTAGTGAGCTCGGCGGGTGGTCTACTCGCCATGCTTAACGAGTCCCGTCCCGAGCTCAAGCTCTACGCTTTGTCCAACCTCAACAAATTGGTCGATGGGTTTTGGCCCGAGATCTCCACCAGCGTTCCCATCATAGAAAGTTTGTATGAAGATGAAGAGTTTGGTCAGCATCAAAGACAACTGGCTGCATTGCTTGTTTCCAAGGTTTTCTACTATTTGGGTGAACTTAATGACTCACTGTCCTATGCCCTTGGAGCTGGTTCGTTATTTGATGTGTCAGAGGATTCTTATTACATTCATACTCTTCTTGCTAAAGCTATTGATGAGTATGCCAGTCTTAAGTCTAAGGCAGCAGAATCAAATGCTGAAGCAGCAAATGTTGATCCTAGGTTGGAGGCTATTGTGGAGAGAATGCTGAATAAGTGTATCCTTGATGGGAAATACCAACAAGCTATGGGGATTGCAATTGAATGTCGAAGACTGGATAAACTTGAGGAAGCAATCATAAAGAGTGATAATGTTCAAGGAACCCTGTCATATTGCATCAATGTCTCTCACTCGTATATTAATCTTAGAGAATATAGACGTGAGGTGCTTCGTCTTCTTGTCAGAGTGTATCAAAATCTGCCTTCTCCAGATTACTTGAGCATTTGCCAGTGTCTCATGTTCTTGGGTGAACCAGAAGGTGTTGCAACCATATTGGAAAAGCTCCTGCGCTCTGATAACAAGGAAGATGCACTATTGGCGTTTCAAATAGCCTTTGACCTTGTTGAGAATGAGCACCAAGCTTTTCTCTTAAATGTAAGAAATCGCCTTTCAGCTCCCAAGACTCAAACTTCAGAGCCAGTGCAACCAGAATCCACTGAAGCTGCACAAAATGAAGGTTCTGCTCCGGGGGATGTTCAAATGACAGATGGAAGTTCTAGTACCAGTGTGGCTGTGCCTGAAGATCCAACTGAAGTGATGTATTCTGAGCGACTGACAAAAATCAAAGGAATTTTATCTGGAGAGACGTCGATAAAGTTGACTTTACAGTTTCTGTACAGCCATAACAAGTCTGATCTGCTCATTCTGAAGACAATAAAGCAGTCTGTTGAGATGAGAAATAGTGTATGCCATAGTGCGACGATTTATGCTAATGCAATTATGCATGCTGGAACAACTGTGGATACATTTCTGAGGGAAAATCTGGACTGGTTAAGCAGGGCCACTAATTGGGCAAAATTCAGCGCAACAGCTGGGCTAGGTGTTATTCACAGAGGCCACTTGCAGCAAGGAAGATCTCTGATGGCACCTTACTTGCCTCAGGGAGGGGCTGGTGGTGGTGGAAGTCCATACTCAGAAGGTGGTGCTCTGTATGCTCTGGGACTTATTCATGCCAACCATGGCGAGGGCATCAAACAGTTCCTTCGTGATAGCCTACGTAGTACTAATGTGGAGGTTATTCAACATGGGGCGTGCTTGGGTCTTGGTTTGTCAGCTTTAGGAACTGCTGATGAAGAGATTTATGATGACATTAAAAGTGTGCTCTATACTGACAGTGCCGTTGCTGGTGAAGCAGCTGGTATTAGTATGGGTTTACTTATGGTTGGAACTGCAAGTGAGAAGGCTAGTGAGATGCTTACTTATGCACATGAGACATCACACGAAAAGATCATCAGAGGGTTGGCATTAGGGATTGCCCTGACGGTATATGGAAGAGAAGAGGAAGCAGACACACTCATTGAACAGATGACAAGAGATCAAGACCCCATACTGCGTTATGGTGGTATGTATGCATTAGCATTGGCCTATAGCGGGACAGCAAACAACAAAGCTATTCGCCAGCTGCTGCATTTTGCTGTGTCAGATGTGAGTGATGATGTTAGAAGAACTGCTGTTCTAGCCCTTGGTTTTGTCTTGTATTCTGAGCCAGAGCAGACGCCTCGCATTGTCTCCCTGCTATCTGAGTCCTACAACCCACATGTTCGATATGGTGCTGCTCTTGCAGTAGGAATTTCTTGTGCTGGTACTGGCTTGAGCGAGGCCATCTCTTTGTTAGAGCCTCTGACTTCAGATGTTGTTGATTTTGTGCGCCAAGGTGCCCTCATTGCAATGGCTATGGTCATGGTCCAGATTAGTGAAGCTAGTGATTCTCGTGTTGGAGCTTTTAGGCGGCAATTGGAGAAAATCATTCTTGATAAGCATGAGGATACCATGAGCAAAATGGGAGCAATCTTGGCCTCTGGAATTCTTGATGCTGGTGGAAGGAATGTGACAATTAGACTTCTTTCCAAAACAAAACATGACAAGGTCACTGCAGTGGTTGGCCTTGCTGTTTTCAGTCAGTTTTGGTACTGGTATCCCCTCATATATTTCTTGAGTTTGGCATTCTCACCAACAGCTTTCATAGGACTGAACTATGACCTTAAAGTTCCGAAGTTTCAGTTCATGTCATTTGCAAAACCTTCTCTGTTTGAATATCCTAAACCGACAACTGTGGCAACCACTACATCAGCTGTGAAACTCCCCACTGCTGTTCTGTCAACATCAGCAAAGGCCACTAAAGCTAGGGCCAAGAAAGAAGCTGCAGATCAGAAGGCAAATCCTGAGAAGACAAATCCTGGGGCAGAGAGTTCTTCCGGAAAAGGAAAATCATCTAGTGAGAAAGATGGGGATTCGATGCAGGTTGATGGTACTACAGAGAAGAAATCAGAACCTGAGCGCAGTGAACCTGCTTTTGAGTTTTTGACCAACCCAGCTAGGGTGGTTCCTGCTCAGGAGGAATACATCAAATTTCTCGAAGAAAGCAGATATGTGCCCGTCAAGCTAGAACCTTCAGGATTTGTTCTCTTGAGAGACCAGAGACCTACTGAACCAGAAGTGCTCTCACTTACGGACACACCCTCTTCCACTGCCTCAGCTGCTGGTGGACCAGCAACTGGACAGTCAGGATCTGCATCAGCCATGGCAGTTGATGAAGAACCTCAACCTCCTCAGCCGTTTGAGTACACCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

1003

Amino Acids

108.92

Weight (kDa)

5.17

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN2_N	PF21505	7 - 354	6e-89	26S proteasome subunit RPN2, N-terminal domain
PC_rep	PF01851	488 - 521	8.2e-06	Proteasome/cyclosome repeat
HEAT_2	PF13646	611 - 703	2e-11	HEAT repeats
PC_rep	PF01851	662 - 695	2.8e-06	Proteasome/cyclosome repeat
RPN2_C	PF18004	797 - 958	3.2e-43	26S proteasome regulatory subunit RPN2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1025
Acc36I	ACCTGC	2 cut(s)	2665, 2731
AccB1I	GGYRCC	2 cut(s)	1300, 2090
AccB7I	CCANNNNNTGG	2 cut(s)	1224, 2930
AccI	GTMKAC	1 cut(s)	31
AccIII	TCCGGA	1 cut(s)	2630
AciI	CCGC	3 cut(s)	23, 1806, 2164
AclWI	GGATC	3 cut(s)	386, 953, 2950
AcsI	RAATTY	5 cut(s)	1005, 1232, 2004, 2238, 2783
AcuI	CTGAAG	8 cut(s)	396, 831, 894, 975, 987, 1103, 2046, 2811
AcyI	GRCGYC	2 cut(s)	1022, 1931
AdeI	CACNNNGTG	1 cut(s)	3006
AfaI	GTAC	7 cut(s)	937, 1052, 1438, 2020, 2345, 2686, 2999
AfiI	CCNNNNNNNGG	6 cut(s)	1224, 1319, 1399, 1806, 2752, 2930
AflII	CTTAAG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	1972
AgsI	TTSAA	7 cut(s)	479, 533, 761, 914, 1457, 1736, 2468
AhdI	GACNNNNNGTC	1 cut(s)	247
AjiI	CACGTC	1 cut(s)	596
AjnI	CCWGG	1 cut(s)	2611
AleI	CACNNNNGTG	1 cut(s)	2309
Alw21I	GWGCWC	6 cut(s)	20, 66, 792, 1363, 1539, 2877
Alw26I	GTCTC	7 cut(s)	565, 674, 1013, 1640, 1948, 2841, 2848
AlwI	GGATC	3 cut(s)	386, 953, 2950
AlwNI	CAGNNNCTG	6 cut(s)	1048, 1840, 2708, 2915, 2930, 2945
Ama87I	CYCGRG	2 cut(s)	59, 116
Aor13HI	TCCGGA	1 cut(s)	2630
AoxI	GGCC	9 cut(s)	113, 1215, 1270, 1797, 2034, 2229, 2317, 2547, 2562
ApoI	RAATTY	5 cut(s)	1005, 1232, 2004, 2238, 2783
AseI	ATTAAT	1 cut(s)	576
AspA2I	CCTAGG	1 cut(s)	395
AspLEI	GCGC	4 cut(s)	726, 1241, 2085, 2715
AspS9I	GGNCC	5 cut(s)	114, 1215, 2119, 2562, 2921
AsuC2I	CCSGG	1 cut(s)	903
AsuHPI	GGTGA	4 cut(s)	242, 695, 1574, 2376
AvaI	CYCGRG	2 cut(s)	59, 116
AvaII	GGWCC	2 cut(s)	2119, 2921
AvrII	CCTAGG	1 cut(s)	395
AxyI	CCTNAGG	1 cut(s)	1314
BaeGI	GKGCMC	2 cut(s)	2095, 2811
BanI	GGYRCC	2 cut(s)	1300, 2090
BanII	GRGCYC	2 cut(s)	20, 66
BarI	GAAGNNNNNNTAC	2 cut(s)	919, 951
BauI	CACGAG	1 cut(s)	2145
BbsI	GAAGAC	4 cut(s)	493, 602, 1091, 2609
Bbv12I	GWGCWC	6 cut(s)	20, 66, 792, 1363, 1539, 2877
BbvCI	CCTCAGC	2 cut(s)	2908, 2985
BccI	CCATC	8 cut(s)	98, 146, 437, 917, 1291, 2045, 2654, 2675
BceAI	ACGGC	2 cut(s)	1538, 2974
BcgI	CGANNNNNNTGC	2 cut(s)	1916, 1950
BciT130I	CCWGG	1 cut(s)	2613
BciVI	GTATCC	4 cut(s)	446, 1171, 2194, 2361
BcnI	CCSGG	1 cut(s)	903
BcoDI	GTCTC	7 cut(s)	565, 674, 1013, 1640, 1948, 2841, 2848
BfmI	CTRYAG	4 cut(s)	1801, 2307, 2577, 2688
BfrI	CTTAAG	1 cut(s)	347
BfuAI	ACCTGC	2 cut(s)	2665, 2731
BfuI	GTATCC	4 cut(s)	446, 1171, 2194, 2361
BglII	AGATCT	2 cut(s)	120, 1289
BlnI	CCTAGG	1 cut(s)	395
BmcAI	AGTACT	1 cut(s)	1438
Bme1390I	CCNGG	2 cut(s)	903, 2613
Bme18I	GGWCC	2 cut(s)	2119, 2921
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmeT110I	CYCGRG	2 cut(s)	59, 116
BmgBI	CACGTC	1 cut(s)	596
BmgT120I	GGNCC	5 cut(s)	114, 1215, 2119, 2562, 2921
BmiI	GGNNCC	4 cut(s)	538, 1302, 2092, 2760
BmrFI	CCNGG	2 cut(s)	903, 2613
BmsI	GCATC	8 cut(s)	187, 561, 733, 1413, 1617, 2236, 2661, 2957
BpiI	GAAGAC	4 cut(s)	493, 602, 1091, 2609
BplI	GAGNNNNNCTC	2 cut(s)	2024, 2056
BpmI	CTGGAG	2 cut(s)	627, 1035
Bpu10I	CCTNAGC	4 cut(s)	2709, 2766, 2908, 2985
BpuEI	CTTGAG	6 cut(s)	50, 521, 673, 2047, 2389, 2863
BpuMI	CCSGG	1 cut(s)	903
BsaAI	YACGTR	1 cut(s)	1433
BsaBI	GATNNNNATC	1 cut(s)	2947
BsaHI	GRCGYC	2 cut(s)	1022, 1931
BsaI	GGTCTC	2 cut(s)	2841, 2848
BsaJI	CCNNGG	9 cut(s)	210, 259, 395, 902, 1393, 1897, 2086, 2612, 2955
BsaWI	WCCGGW	1 cut(s)	2630
Bsc4I	CCNNNNNNNGG	6 cut(s)	1224, 1319, 1399, 1806, 2752, 2930
Bse21I	CCTNAGG	1 cut(s)	1314
Bse3DI	GCAATG	3 cut(s)	197, 2097, 2109
Bse8I	GATNNNNATC	1 cut(s)	2947
BseAI	TCCGGA	1 cut(s)	2630
BseBI	CCWGG	1 cut(s)	2613
BseDI	CCNNGG	9 cut(s)	210, 259, 395, 902, 1393, 1897, 2086, 2612, 2955
BseGI	GGATG	1 cut(s)	913
BseJI	GATNNNNATC	1 cut(s)	2947
BseLI	CCNNNNNNNGG	6 cut(s)	1224, 1319, 1399, 1806, 2752, 2930
BseMI	GCAATG	3 cut(s)	197, 2097, 2109
BseRI	GAGGAG	1 cut(s)	2973
BseSI	GKGCMC	2 cut(s)	2095, 2811
BseYI	CCCAGC	2 cut(s)	1247, 2746
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	9 cut(s)	115, 1217, 1272, 1799, 2036, 2231, 2319, 2549, 2564
BshNI	GGYRCC	2 cut(s)	1300, 2090
BsiHKAI	GWGCWC	6 cut(s)	20, 66, 792, 1363, 1539, 2877
BsiHKCI	CYCGRG	2 cut(s)	59, 116
BsiSI	CCGG	2 cut(s)	902, 2631
BslFI	GGGAC	4 cut(s)	37, 42, 1389, 1822
BslI	CCNNNNNNNGG	6 cut(s)	1224, 1319, 1399, 1806, 2752, 2930
BsmAI	GTCTC	7 cut(s)	565, 674, 1013, 1640, 1948, 2841, 2848
BsmBI	CGTCTC	1 cut(s)	1013
BsmFI	GGGAC	4 cut(s)	37, 42, 1389, 1822
BsmI	GAATGC	2 cut(s)	426, 2378
BsnI	GGCC	9 cut(s)	115, 1217, 1272, 1799, 2036, 2231, 2319, 2549, 2564
Bso31I	GGTCTC	2 cut(s)	2841, 2848
BsoBI	CYCGRG	2 cut(s)	59, 116
Bsp1286I	GDGCHC	8 cut(s)	20, 66, 792, 1363, 1539, 2095, 2811, 2877
Bsp13I	TCCGGA	1 cut(s)	2630
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp143I	GATC	9 cut(s)	120, 391, 958, 1069, 1289, 1662, 1750, 2581, 2942
Bsp19I	CCATGG	2 cut(s)	1393, 2955
BspACI	CCGC	3 cut(s)	23, 1806, 2164
BspANI	GGCC	9 cut(s)	115, 1217, 1272, 1799, 2036, 2231, 2319, 2549, 2564
BspEI	TCCGGA	1 cut(s)	2630
BspLI	GGNNCC	4 cut(s)	538, 1302, 2092, 2760
BspMAI	CTGCAG	2 cut(s)	2311, 2581
BspMI	ACCTGC	2 cut(s)	2665, 2731
BspPI	GGATC	3 cut(s)	386, 953, 2950
BspT107I	GGYRCC	2 cut(s)	1300, 2090
BspTI	CTTAAG	1 cut(s)	347
BspTNI	GGTCTC	2 cut(s)	2841, 2848
BsrDI	GCAATG	3 cut(s)	197, 2097, 2109
BsrGI	TGTACA	1 cut(s)	1050
BssECI	CCNNGG	9 cut(s)	210, 259, 395, 902, 1393, 1897, 2086, 2612, 2955
BssMI	GATC	9 cut(s)	120, 391, 958, 1069, 1289, 1662, 1750, 2581, 2942
BssNI	GRCGYC	2 cut(s)	1022, 1931
BssSI	CACGAG	1 cut(s)	2145
BssT1I	CCWWGG	7 cut(s)	210, 259, 395, 1393, 1897, 2086, 2955
Bst2BI	CACGAG	1 cut(s)	2145
Bst2UI	CCWGG	1 cut(s)	2613
Bst4CI	ACNGT	9 cut(s)	249, 1044, 1174, 1413, 1550, 1699, 2488, 2937, 3004
Bst6I	CTCTTC	6 cut(s)	159, 318, 1503, 1702, 1707, 2902
BstACI	GRCGYC	2 cut(s)	1022, 1931
BstAFI	CTTAAG	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	1050
BstBAI	YACGTR	1 cut(s)	1433
BstC8I	GCNNGC	3 cut(s)	1161, 1468, 1835
BstDSI	CCRYGG	2 cut(s)	1393, 2955
BstENI	CCTNNNNNAGG	1 cut(s)	1317
BstF5I	GGATG	1 cut(s)	913
BstHHI	GCGC	4 cut(s)	726, 1241, 2085, 2715
BstKTI	GATC	9 cut(s)	123, 394, 961, 1072, 1292, 1665, 1753, 2584, 2945
BstMAI	GTCTC	7 cut(s)	565, 674, 1013, 1640, 1948, 2841, 2848
BstMBI	GATC	9 cut(s)	120, 391, 958, 1069, 1289, 1662, 1750, 2581, 2942
BstNI	CCWGG	1 cut(s)	2613
BstNSI	RCATGY	2 cut(s)	1163, 1976
BstSCI	CCNGG	2 cut(s)	901, 2611
BstSFI	CTRYAG	4 cut(s)	1801, 2307, 2577, 2688
BstSLI	GKGCMC	2 cut(s)	2095, 2811
BstSNI	TACGTA	1 cut(s)	1433
BstV2I	GAAGAC	4 cut(s)	493, 602, 1091, 2609
BstX2I	RGATCY	4 cut(s)	120, 958, 1289, 2942
BstYI	RGATCY	4 cut(s)	120, 958, 1289, 2942
Bsu36I	CCTNAGG	1 cut(s)	1314
BsuI	GTATCC	4 cut(s)	446, 1171, 2194, 2361
BsuRI	GGCC	9 cut(s)	115, 1217, 1272, 1799, 2036, 2231, 2319, 2549, 2564
BtgI	CCRYGG	2 cut(s)	1393, 2955
BtrI	CACGTC	1 cut(s)	596
BtsCI	GGATG	1 cut(s)	913
BtsI	GCAGTG	5 cut(s)	2304, 2316, 2520, 2722, 2901
BveI	ACCTGC	2 cut(s)	2665, 2731
Cac8I	GCNNGC	3 cut(s)	1161, 1468, 1835
CaiI	CAGNNNCTG	6 cut(s)	1048, 1840, 2708, 2915, 2930, 2945
CfoI	GCGC	4 cut(s)	726, 1241, 2085, 2715
Cfr13I	GGNCC	5 cut(s)	114, 1215, 2119, 2562, 2921
CseI	GACGC	1 cut(s)	1939
Csp6I	GTAC	7 cut(s)	936, 1051, 1437, 2019, 2344, 2685, 2998
CviQI	GTAC	7 cut(s)	936, 1051, 1437, 2019, 2344, 2685, 2998
DpnI	GATC	9 cut(s)	122, 393, 960, 1071, 1291, 1664, 1752, 2583, 2944
DpnII	GATC	9 cut(s)	120, 391, 958, 1069, 1289, 1662, 1750, 2581, 2942
DraIII	CACNNNGTG	1 cut(s)	3006
DriI	GACNNNNNGTC	1 cut(s)	247
Eam1104I	CTCTTC	6 cut(s)	159, 318, 1503, 1702, 1707, 2902
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EarI	CTCTTC	6 cut(s)	159, 318, 1503, 1702, 1707, 2902
Ecl136II	GAGCTC	2 cut(s)	18, 64
Eco105I	TACGTA	1 cut(s)	1433
Eco130I	CCWWGG	7 cut(s)	210, 259, 395, 1393, 1897, 2086, 2955
Eco24I	GRGCYC	2 cut(s)	20, 66
Eco31I	GGTCTC	2 cut(s)	2841, 2848
Eco47I	GGWCC	2 cut(s)	2119, 2921
Eco53kI	GAGCTC	2 cut(s)	18, 64
Eco57I	CTGAAG	8 cut(s)	396, 831, 894, 975, 987, 1103, 2046, 2811
Eco81I	CCTNAGG	1 cut(s)	1314
Eco88I	CYCGRG	2 cut(s)	59, 116
EcoICRI	GAGCTC	2 cut(s)	18, 64
EcoNI	CCTNNNNNAGG	1 cut(s)	1317
EcoRI	GAATTC	1 cut(s)	2238
EcoRII	CCWGG	1 cut(s)	2611
EcoT14I	CCWWGG	7 cut(s)	210, 259, 395, 1393, 1897, 2086, 2955
EcoT22I	ATGCAT	2 cut(s)	1161, 1789
EcoT38I	GRGCYC	2 cut(s)	20, 66
ErhI	CCWWGG	7 cut(s)	210, 259, 395, 1393, 1897, 2086, 2955
Esp3I	CGTCTC	1 cut(s)	1013
FaqI	GGGAC	4 cut(s)	37, 42, 1389, 1822
FauI	CCCGC	2 cut(s)	16, 1799
FblI	GTMKAC	1 cut(s)	31
FokI	GGATG	1 cut(s)	920
FriOI	GRGCYC	2 cut(s)	20, 66
GlaI	GCGC	4 cut(s)	725, 1240, 2084, 2714
GsaI	CCCAGC	2 cut(s)	1251, 2750
GsuI	CTGGAG	2 cut(s)	627, 1035
HaeIII	GGCC	9 cut(s)	115, 1217, 1272, 1799, 2036, 2231, 2319, 2549, 2564
HapII	CCGG	2 cut(s)	902, 2631
HgaI	GACGC	1 cut(s)	1939
HhaI	GCGC	4 cut(s)	726, 1241, 2085, 2715
Hin1I	GRCGYC	2 cut(s)	1022, 1931
Hin6I	GCGC	4 cut(s)	724, 1239, 2083, 2713
HinP1I	GCGC	4 cut(s)	724, 1239, 2083, 2713
HincII	GTYRAC	2 cut(s)	1035, 2535
HindII	GTYRAC	2 cut(s)	1035, 2535
HindIII	AAGCTT	1 cut(s)	795
HinfI	GANTC	9 cut(s)	50, 242, 293, 365, 838, 866, 1958, 2141, 2666
HpaII	CCGG	2 cut(s)	902, 2631
HphI	GGTGA	4 cut(s)	242, 695, 1574, 2376
Hpy166II	GTNNAC	9 cut(s)	32, 233, 686, 1035, 1589, 2535, 2720, 2921, 3000
Hpy8I	GTNNAC	9 cut(s)	32, 233, 686, 1035, 1589, 2535, 2720, 2921, 3000
Hpy99I	CGWCG	2 cut(s)	1027, 1138
HpyCH4III	ACNGT	9 cut(s)	249, 1044, 1174, 1413, 1550, 1699, 2488, 2937, 3004
HpyCH4IV	ACGT	3 cut(s)	595, 1022, 1432
HpySE526I	ACGT	3 cut(s)	595, 1022, 1432
Hsp92I	GRCGYC	2 cut(s)	1022, 1931
HspAI	GCGC	4 cut(s)	724, 1239, 2083, 2713
Kpn2I	TCCGGA	1 cut(s)	2630
Kzo9I	GATC	9 cut(s)	120, 391, 958, 1069, 1289, 1662, 1750, 2581, 2942
LmnI	GCTCC	6 cut(s)	263, 723, 835, 904, 2153, 2219
LweI	GCATC	8 cut(s)	187, 561, 733, 1413, 1617, 2236, 2661, 2957
MaeII	ACGT	3 cut(s)	595, 1022, 1432
MaeIII	GTNAC	2 cut(s)	2263, 2302
MalI	GATC	9 cut(s)	122, 393, 960, 1071, 1291, 1664, 1752, 2583, 2944
MboI	GATC	9 cut(s)	120, 391, 958, 1069, 1289, 1662, 1750, 2581, 2942
MfeI	CAATTG	2 cut(s)	474, 2168
MflI	RGATCY	4 cut(s)	120, 958, 1289, 2942
MhlI	GDGCHC	8 cut(s)	20, 66, 792, 1363, 1539, 2095, 2811, 2877
MlyI	GAGTC	4 cut(s)	59, 236, 832, 1967
MmeI	TCCRAC	5 cut(s)	108, 381, 986, 1579, 2131
Mph1103I	ATGCAT	2 cut(s)	1161, 1789
MroI	TCCGGA	1 cut(s)	2630
MseI	TTAA	8 cut(s)	45, 237, 348, 576, 806, 1208, 1527, 2418
MslI	CAYNNNNRTG	2 cut(s)	2102, 2309
MspA1I	CMGCKG	5 cut(s)	1247, 1571, 1837, 2507, 2912
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	2 cut(s)	902, 2631
MspR9I	CCNGG	2 cut(s)	903, 2613
MunI	CAATTG	2 cut(s)	474, 2168
Mva1269I	GAATGC	2 cut(s)	426, 2378
MvaI	CCWGG	1 cut(s)	2613
NciI	CCSGG	1 cut(s)	903
NcoI	CCATGG	2 cut(s)	1393, 2955
NdeII	GATC	9 cut(s)	120, 391, 958, 1069, 1289, 1662, 1750, 2581, 2942
NlaIV	GGNNCC	4 cut(s)	538, 1302, 2092, 2760
NmuCI	GTSAC	2 cut(s)	2263, 2302
NsiI	ATGCAT	2 cut(s)	1161, 1789
NspI	RCATGY	2 cut(s)	1163, 1976
OliI	CACNNNNGTG	1 cut(s)	2309
PaeI	GCATGC	1 cut(s)	1163
PciI	ACATGT	1 cut(s)	1972
PctI	GAATGC	2 cut(s)	426, 2378
PfeI	GAWTC	5 cut(s)	293, 365, 866, 2141, 2666
PflFI	GACNNNGTC	1 cut(s)	2300
PflMI	CCANNNNNTGG	2 cut(s)	1224, 2930
PleI	GAGTC	4 cut(s)	58, 236, 832, 1966
PpsI	GAGTC	4 cut(s)	58, 236, 832, 1966
Ppu21I	YACGTR	1 cut(s)	1433
PscI	ACATGT	1 cut(s)	1972
PshBI	ATTAAT	1 cut(s)	576
Psp124BI	GAGCTC	2 cut(s)	20, 66
Psp6I	CCWGG	1 cut(s)	2611
PspFI	CCCAGC	2 cut(s)	1247, 2746
PspGI	CCWGG	1 cut(s)	2611
PspN4I	GGNNCC	4 cut(s)	538, 1302, 2092, 2760
PspPI	GGNCC	5 cut(s)	114, 1215, 2119, 2562, 2921
PstI	CTGCAG	2 cut(s)	2311, 2581
PstNI	CAGNNNCTG	6 cut(s)	1048, 1840, 2708, 2915, 2930, 2945
PsuI	RGATCY	4 cut(s)	120, 958, 1289, 2942
PsyI	GACNNNGTC	1 cut(s)	2300
PvuII	CAGCTG	5 cut(s)	1247, 1571, 1837, 2507, 2912
RsaI	GTAC	7 cut(s)	937, 1052, 1438, 2020, 2345, 2686, 2999
RsaNI	GTAC	7 cut(s)	936, 1051, 1437, 2019, 2344, 2685, 2998
RseI	CAYNNNNRTG	2 cut(s)	2102, 2309
SacI	GAGCTC	2 cut(s)	20, 66
SaqAI	TTAA	8 cut(s)	45, 237, 348, 576, 806, 1208, 1527, 2418
Sau3AI	GATC	9 cut(s)	120, 391, 958, 1069, 1289, 1662, 1750, 2581, 2942
Sau96I	GGNCC	5 cut(s)	114, 1215, 2119, 2562, 2921
ScaI	AGTACT	1 cut(s)	1438
SchI	GAGTC	4 cut(s)	59, 236, 832, 1967
ScrFI	CCNGG	2 cut(s)	903, 2613
SduI	GDGCHC	8 cut(s)	20, 66, 792, 1363, 1539, 2095, 2811, 2877
SfaNI	GCATC	8 cut(s)	187, 561, 733, 1413, 1617, 2236, 2661, 2957
SfcI	CTRYAG	4 cut(s)	1801, 2307, 2577, 2688
SinI	GGWCC	2 cut(s)	2119, 2921
SmiMI	CAYNNNNRTG	2 cut(s)	2102, 2309
SmlI	CTYRAG	7 cut(s)	65, 347, 500, 652, 2026, 2368, 2842
SmoI	CTYRAG	7 cut(s)	65, 347, 500, 652, 2026, 2368, 2842
SnaBI	TACGTA	1 cut(s)	1433
SphI	GCATGC	1 cut(s)	1163
SsiI	CCGC	3 cut(s)	23, 1806, 2164
SstI	GAGCTC	2 cut(s)	20, 66
StyD4I	CCNGG	2 cut(s)	901, 2611
StyI	CCWWGG	7 cut(s)	210, 259, 395, 1393, 1897, 2086, 2955
TaaI	ACNGT	9 cut(s)	249, 1044, 1174, 1413, 1550, 1699, 2488, 2937, 3004
TaiI	ACGT	3 cut(s)	598, 1025, 1435
TaqI	TCGA	6 cut(s)	102, 484, 1025, 1978, 2669, 2790
TatI	WGTACW	3 cut(s)	1050, 1436, 2997
TauI	GCSGC	1 cut(s)	2167
TfiI	GAWTC	5 cut(s)	293, 365, 866, 2141, 2666
Tru1I	TTAA	8 cut(s)	45, 237, 348, 576, 806, 1208, 1527, 2418
Tru9I	TTAA	8 cut(s)	45, 237, 348, 576, 806, 1208, 1527, 2418
TseFI	GTSAC	2 cut(s)	2263, 2302
Tsp45I	GTSAC	2 cut(s)	2263, 2302
TspDTI	ATGAA	9 cut(s)	171, 177, 296, 903, 1373, 1521, 2386, 2428, 2982
TspGWI	ACGGA	1 cut(s)	2900
Tth111I	GACNNNGTC	1 cut(s)	2300
Van91I	CCANNNNNTGG	2 cut(s)	1224, 2930
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	2119, 2921
VspI	ATTAAT	1 cut(s)	576
XagI	CCTNNNNNAGG	1 cut(s)	1317
XapI	RAATTY	5 cut(s)	1005, 1232, 2004, 2238, 2783
XceI	RCATGY	2 cut(s)	1163, 1976
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2212
XmaJI	CCTAGG	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	31
ZraI	GACGTC	1 cut(s)	1023
ZrmI	AGTACT	1 cut(s)	1438
Zsp2I	ATGCAT	2 cut(s)	1161, 1789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.