Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003773

Physical Location & Seq

Genomic Coordinates Reverse (-)

50736781 .. 50744845

Gene Structure 8065 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1407100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3018 bp

ATGGCGACTCTGGTGAGCTCGGCCGGTGGGCTACTAGCGATGCTGAACGAGTCCCATCCTTTGCTCAAGCTCCACGCTTTGTCCAACCTCAACAAATTGGTCGACAACTTTTGGCCCGAGATCTCCACCAGCGTCCCCGTCATAGAAAGTTTGTATGAAGATGAAGAGTTTGATCAACATCAAAGACAACTGGCGGCATTGCTTGTGTCAAAGGTTTTCTATTATTTGGGTGAACTTAATGATTCACTCTCCTATGCCCTTGGAGCTAGTTCGTTATTTGATGTGTCAGAGGATTCTGATTATGTCCATACTCTTCTAGCTAAAGCTATAGACGAATATGCCAGTCTTAAGTCTAAGGCAGCAGAATCAAGTGCTGAAGCAGCAAATGTGGATCCTAGATTGGAGGCAATTGTAGAGAGAATGCTGAATAAGTGTATCGTGGATGGAAAGTACCACCAGGCTATGGGGATTGCAATTGAATGCCGAAGATTGGATATACTTGAGGAAGCAATCACAAAAAGTGATAATGTGCATGGAACTTTGTCATATTGCATAAATGTCTCTCATTCCTTTGTTAATCTTAGAGAATATAGACGTGAGGTACTTCGTCTTCTGGTAAATGTGTATCAGAAACTGCCTTCTCCAGATTATTTGAGCATTTGTCAGTGTCTCATGTTCTTAGATGAACCTGAAGGTGTTGCAAGCATATTGGAAAAGCTTCTGCGTTCTGAAAACAAGGACGATGCGCTCTTGGCATATCAAGTAGCCTTTGATCTCATAGAGAATGAACACCAAGCTTTTCTCTTAAGTGTAAGAAATGGCCTCTCACCTCCCAAGCCTCAGCCATCAGAAGCTGCGCAGCCAGAAGCCAGTGAAGCTGCAACAAATGAAAGTTCTGCTGCTGAGGATGTTCAAATGACAGATGGAGGTTCTACTTCTAATGTGAGTGTGCTCGAAGATCCGAAAGAAGTGATCTATTCTGAGAGGCTAACAAAAATTAAAGGAATTTTGTCTGGCGAGACTTCAATACAGTTGACTCTACAATTTTTGTACAGTCATAACAAGTCCGATCTTCTTATTCTGAAGACAATAAAGCAGTCTGTTGAGATGAGAAATAGTGTATGCCATAGTGCAACCATTTATGCTAATGCAATTATGCATGCTGGAACGACTGTGGACACATTTCTTAGAGAGAATCTGGACTGGTTGAGCAGAGCCACAAATTGGGCAAAATTCAGTGCAACAGCAGGGTTAGGTGTTATTCACAGAGGCCACTTGCAGCAAGGAAGATCTCTGATGGCACCTTACTTGCCTCAGGGTGGTGCTGGTGGTGGCGGTGGCAGTCCGTACTCAGAAGGCGGTGCTCTGTATGCTTTGGGTCTTATTCATGCCAACCATGGCGAGGGCATCAAAGAATTCCTCCGTGATAGCCTACGTAGTACCAATGTAGAGGTTATTCAACATGGTGCATGCTTAGGTCTTGGCTTATCAGCTTTAGGAACTGCTGACGAAGAGATCTATGATGACATTAAAAATGTGCTGTATACTGACAGTGCTGTTGCAGGTGAAGCTGCTGGGATTAGTATGGGTTTGCTTATGGTTGGAACTGCAAGTGAGAAGGCTAGTGAGATGCTTGTTTATGCACATGAGACACAACATGAAAAGATCATCAGGGGGTTAGCATTGGGAATTGCCTTGACAGTATATGGAAGAGAAGAAGAAGCAGACACACTAATTGAGCAGATGACAAGGGATCAAGATCCTATACTACGTTATGGTGGTATGTATGCTTTGGCATTGGCCTACAGTGGGACAGCAAACAACAAAGCCATTCGTCAGCTGCTGCATTTTGCTGTGTCTGATGTGAGTGATGATGTTAGGAGGACTGCTGTTCTAGCACTTGGGTTTGTGTTGTACTCTGAGCCAGAGCAGACGCCAAGAATTGTCTCCCTGCTATCTGAGTCTTACAACCCGCATGTTCGTTATGGTGCTGCTCTTGCAGTAGGCATTTCCTGTGCTGGTACTGGCTTGAGTGAGGCCATATCTTTGCTAGAGCCTCTGACTTCAGATGTTGTTGATTTTGTGCGCCAAGGTGCTCTCATTGCAATGGCTATGGTCATGGTCCAGATTAGTGAAGCCAGTGATTCTCGTGTAGGAGTTTTCAGGCGGCAATTGGAGAGAATTATTCTTGATAAGCATGAGGACACCATGAGCAAAATGGGAGCAATCTTGGCCTCCGGAATTCTCGATGCTGGTGGAAGGAACGTGACCATAAGATTACTTTCTAAGACAAAACATGATAAGGTCACCGCAGTTGTTGGCCTTGCTGTTTTCAGCCAGTATTGGTATTGGTATCCTCTCATTTATTTCATAAGCTTGGCATTCTCACCAACAGCTTTGATAGGACTGAACTCTGACCTGAAAGTGCCAAAGTTTGAGTTCATGTCACATGCAAAACCTTCGCTGTTTGAATATCCTAAACCGACCACTGTGCCAACTGCCACATCGGCTGTAAAACTCCCCACTGCTGTATTGTCAACATCAGCAAAGGCCAGCAAAGCTAAGGCCAAGAAAGAAGCAGACCAGAAGGCAAATGCTGGAAAATTATCCGGGGTGGAGGCTTCATCTTCCAGAGCAAAGAATGAGAAAGGAAAATCAAGTGAGAAGGATGGGGATTCAATGCAGGTTGATGGCCAAGCGGAAAAGAAATCAGAGCCTGAGCCTTCTTTTGAGATTTTAACGAACCCTGCTAGGGTGGTTCCTTCTCAGGAGAAATATATCAAATTTCTGGAAGAAAGTAGATACGTGCCCATTAAGTTAGCACCTTCGGGGTTTGTTCTCTTGAGAGACCTGCGACCTACTGAGCCCGAGGTGCTTTCACTTACCGACACTCCGTCTTCTACAGCATCTGCAGCTGGTGGTGTATCAGCAACCGGACAGCAGGATTCTGCATCGACCATGGCTGTTGATGAGGAACCTCAGCCACCTCAGCCTTTTGAATACACTTCTAATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

1006

Amino Acids

109.06

Weight (kDa)

5.19

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN2_N	PF21505	7 - 354	3.2e-90	26S proteasome subunit RPN2, N-terminal domain
PC_rep	PF01851	489 - 522	6e-06	Proteasome/cyclosome repeat
HEAT_2	PF13646	612 - 704	2e-11	HEAT repeats
PC_rep	PF01851	663 - 696	2.8e-06	Proteasome/cyclosome repeat
RPN2_C	PF18004	798 - 958	1.8e-46	26S proteasome regulatory subunit RPN2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04810 AT2G32730
fragaria_vesca	FvH4_4g00680
malus_domestica	MD04G1006300.v1.1 MD08G1218500.v1.1 MD08G1218600.v1.1 MD15G1407100.v1.1
prunus_persica	Prupe.1G006500_v2.0.a1 Prupe.1G006500_v2.0.a1 Prupe.1G554900_v2.0.a1
pyrus_communis	pycom04g00570 pycom08g18930 pycom15g36330
rosa_chinensis	RchiOBHm_Chr4g0386391 RchiOBHm_Chr6g0269091 RchiOBHm_Chr6g0269101 RchiOBHm_Chr6g0269111
rosa_laevigata	RLG00000010168 RLG00000013884
rosa_multiflora	Rmu_co8360047.1_g000001 Rmu_sc0000472.1_g000007 Rmu_sc0002413.1_g000010
rosa_roxburghii	Rroxscaffold_5G00333870
rosa_rugosa	Rorug03G0197200 Rorug03G0306500 Rorug06G0044800
rosa_samantha	Rh3BG283800 Rh4AG010900 Rh4BG008300 Rh4DG009100 Rh6CG164400 Rh6CG164500 Rh6DG156000
rosa_wichuraiana	Rw4G000090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1553
Acc16I	TGCGCA	1 cut(s)	858
Acc36I	ACCTGC	3 cut(s)	1553, 2674, 2859
AccB1I	GGYRCC	1 cut(s)	1300
AccB7I	CCANNNNNTGG	2 cut(s)	463, 1224
AccI	GTMKAC	2 cut(s)	102, 1544
AccIII	TCCGGA	1 cut(s)	2237
AciI	CCGC	7 cut(s)	194, 1335, 1359, 1973, 2167, 2310, 2699
AclWI	GGATC	5 cut(s)	386, 399, 953, 1754, 1761
AcoI	YGGCCR	2 cut(s)	21, 2692
AcsI	RAATTY	5 cut(s)	1005, 1232, 1415, 2241, 2783
AcuI	CTGAAG	4 cut(s)	396, 711, 1103, 2049
AcyI	GRCGYC	1 cut(s)	1934
AfaI	GTAC	7 cut(s)	452, 603, 1052, 1349, 1441, 1916, 2023
AfiI	CCNNNNNNNGG	7 cut(s)	463, 490, 1224, 1319, 1402, 1809, 2752
AflII	CTTAAG	2 cut(s)	347, 805
AgsI	TTSAA	7 cut(s)	479, 914, 1026, 1460, 2471, 2679, 2999
AhdI	GACNNNNNGTC	1 cut(s)	2893
AjiI	CACGTC	1 cut(s)	596
AjnI	CCWGG	1 cut(s)	456
Alw21I	GWGCWC	4 cut(s)	20, 954, 1366, 2098
Alw26I	GTCTC	6 cut(s)	565, 674, 1013, 1643, 1951, 2841
AlwI	GGATC	5 cut(s)	386, 399, 953, 1754, 1761
AlwNI	CAGNNNCTG	5 cut(s)	634, 854, 1843, 2717, 2909
Ama87I	CYCGRG	2 cut(s)	116, 2867
Aor13HI	TCCGGA	1 cut(s)	2237
ApoI	RAATTY	5 cut(s)	1005, 1232, 1415, 2241, 2783
Asp700I	GAANNNNTTC	1 cut(s)	717
AspLEI	GCGC	3 cut(s)	748, 859, 2088
AspS9I	GGNCC	2 cut(s)	114, 2122
AsuC2I	CCSGG	1 cut(s)	2611
AsuHPI	GGTGA	6 cut(s)	25, 242, 819, 1577, 2299, 2379
AvaI	CYCGRG	2 cut(s)	116, 2867
AvaII	GGWCC	1 cut(s)	2122
AxyI	CCTNAGG	1 cut(s)	1314
BaeGI	GKGCMC	1 cut(s)	2811
BalI	TGGCCA	1 cut(s)	2694
BamHI	GGATCC	1 cut(s)	391
BanI	GGYRCC	1 cut(s)	1300
BanII	GRGCYC	2 cut(s)	20, 2868
BarI	GAAGNNNNNNTAC	2 cut(s)	594, 626
BauI	CACGAG	1 cut(s)	2148
BbsI	GAAGAC	3 cut(s)	602, 1091, 2889
Bbv12I	GWGCWC	4 cut(s)	20, 954, 1366, 2098
BbvCI	CCTCAGC	4 cut(s)	840, 903, 2979, 2988
BccI	CCATC	7 cut(s)	63, 437, 853, 917, 1291, 2663, 2684
BcgI	CGANNNNNNTGC	4 cut(s)	2442, 2473, 2476, 2507
BciT130I	CCWGG	1 cut(s)	458
BciVI	GTATCC	1 cut(s)	2364
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	2611
BcoDI	GTCTC	6 cut(s)	565, 674, 1013, 1643, 1951, 2841
BfaI	CTAG	8 cut(s)	35, 267, 317, 396, 1623, 1895, 2051, 2751
BfmI	CTRYAG	4 cut(s)	327, 1804, 2901, 2910
BfrI	CTTAAG	2 cut(s)	347, 805
BfuAI	ACCTGC	3 cut(s)	1553, 2674, 2859
BfuI	GTATCC	1 cut(s)	2364
BglI	GCCNNNNNGGC	1 cut(s)	2507
BglII	AGATCT	3 cut(s)	120, 1289, 1515
Bme1390I	CCNGG	2 cut(s)	458, 2611
Bme18I	GGWCC	1 cut(s)	2122
BmeRI	GACNNNNNGTC	1 cut(s)	2893
BmeT110I	CYCGRG	2 cut(s)	116, 2867
BmgBI	CACGTC	1 cut(s)	596
BmgT120I	GGNCC	2 cut(s)	114, 2122
BmiI	GGNNCC	4 cut(s)	393, 1302, 2760, 2976
BmrFI	CCNGG	2 cut(s)	458, 2611
BmsI	GCATC	7 cut(s)	30, 733, 1416, 1620, 2239, 2915, 2960
BpiI	GAAGAC	3 cut(s)	602, 1091, 2889
BpmI	CTGGAG	1 cut(s)	627
Bpu10I	CCTNAGC	7 cut(s)	840, 903, 1474, 2562, 2718, 2979, 2988
BpuEI	CTTGAG	4 cut(s)	50, 521, 2050, 2863
BpuMI	CCSGG	1 cut(s)	2611
BsaAI	YACGTR	2 cut(s)	1436, 2806
BsaBI	GATNNNNATC	2 cut(s)	177, 1758
BsaHI	GRCGYC	1 cut(s)	1934
BsaI	GGTCTC	1 cut(s)	2841
BsaJI	CCNNGG	6 cut(s)	259, 1396, 2089, 2610, 2868, 2958
BsaWI	WCCGGW	2 cut(s)	2237, 2933
BsaXI	ACNNNNNCTCC	2 cut(s)	2875, 2905
Bsc4I	CCNNNNNNNGG	7 cut(s)	463, 490, 1224, 1319, 1402, 1809, 2752
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	7 cut(s)	195, 342, 870, 1208, 2029, 2139, 2338
Bse21I	CCTNAGG	1 cut(s)	1314
Bse3DI	GCAATG	3 cut(s)	197, 2100, 2112
Bse8I	GATNNNNATC	2 cut(s)	177, 1758
BseAI	TCCGGA	1 cut(s)	2237
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	6 cut(s)	259, 1396, 2089, 2610, 2868, 2958
BseGI	GGATG	4 cut(s)	55, 448, 913, 2674
BseJI	GATNNNNATC	2 cut(s)	177, 1758
BseLI	CCNNNNNNNGG	7 cut(s)	463, 490, 1224, 1319, 1402, 1809, 2752
BseMI	GCAATG	3 cut(s)	197, 2100, 2112
BseNI	ACTGG	7 cut(s)	195, 342, 870, 1208, 2029, 2139, 2338
BseSI	GKGCMC	1 cut(s)	2811
BseX3I	CGGCCG	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	1574
Bsh1285I	CGRYCG	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	1300
BsiEI	CGRYCG	1 cut(s)	24
BsiHKAI	GWGCWC	4 cut(s)	20, 954, 1366, 2098
BsiHKCI	CYCGRG	2 cut(s)	116, 2867
BsiSI	CCGG	4 cut(s)	24, 2238, 2610, 2934
BslFI	GGGAC	3 cut(s)	37, 119, 1825
BslI	CCNNNNNNNGG	7 cut(s)	463, 490, 1224, 1319, 1402, 1809, 2752
BsmAI	GTCTC	6 cut(s)	565, 674, 1013, 1643, 1951, 2841
BsmFI	GGGAC	3 cut(s)	37, 119, 1825
BsmI	GAATGC	3 cut(s)	426, 485, 2381
Bso31I	GGTCTC	1 cut(s)	2841
BsoBI	CYCGRG	2 cut(s)	116, 2867
Bsp1286I	GDGCHC	6 cut(s)	20, 954, 1366, 2098, 2811, 2868
Bsp13I	TCCGGA	1 cut(s)	2237
Bsp1407I	TGTACA	1 cut(s)	1050
Bsp19I	CCATGG	2 cut(s)	1396, 2958
BspACI	CCGC	7 cut(s)	194, 1335, 1359, 1973, 2167, 2310, 2699
BspEI	TCCGGA	1 cut(s)	2237
BspLI	GGNNCC	4 cut(s)	393, 1302, 2760, 2976
BspMAI	CTGCAG	1 cut(s)	2914
BspMI	ACCTGC	3 cut(s)	1553, 2674, 2859
BspPI	GGATC	5 cut(s)	386, 399, 953, 1754, 1761
BspT107I	GGYRCC	1 cut(s)	1300
BspTI	CTTAAG	2 cut(s)	347, 805
BspTNI	GGTCTC	1 cut(s)	2841
BsrDI	GCAATG	3 cut(s)	197, 2100, 2112
BsrFI	RCCGGY	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	1050
BsrI	ACTGG	7 cut(s)	195, 342, 870, 1208, 2029, 2139, 2338
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	6 cut(s)	259, 1396, 2089, 2610, 2868, 2958
BssNAI	GTATAC	1 cut(s)	1545
BssNI	GRCGYC	1 cut(s)	1934
BssSI	CACGAG	1 cut(s)	2148
BssT1I	CCWWGG	4 cut(s)	259, 1396, 2089, 2958
Bst1107I	GTATAC	1 cut(s)	1545
Bst2BI	CACGAG	1 cut(s)	2148
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	7 cut(s)	1032, 1055, 1174, 1553, 1702, 1808, 2491
Bst6I	CTCTTC	4 cut(s)	159, 318, 1506, 1705
BstACI	GRCGYC	1 cut(s)	1934
BstAFI	CTTAAG	2 cut(s)	347, 805
BstAUI	TGTACA	1 cut(s)	1050
BstBAI	YACGTR	2 cut(s)	1436, 2806
BstC8I	GCNNGC	4 cut(s)	703, 1161, 1471, 2554
BstDSI	CCRYGG	2 cut(s)	1396, 2958
BstEII	GGTNACC	1 cut(s)	2305
BstF5I	GGATG	4 cut(s)	55, 448, 913, 2674
BstHHI	GCGC	3 cut(s)	748, 859, 2088
BstMAI	GTCTC	6 cut(s)	565, 674, 1013, 1643, 1951, 2841
BstMCI	CGRYCG	1 cut(s)	24
BstNI	CCWGG	1 cut(s)	458
BstNSI	RCATGY	4 cut(s)	1163, 1473, 1979, 2453
BstPI	GGTNACC	1 cut(s)	2305
BstSCI	CCNGG	2 cut(s)	456, 2609
BstSFI	CTRYAG	4 cut(s)	327, 1804, 2901, 2910
BstSLI	GKGCMC	1 cut(s)	2811
BstSNI	TACGTA	1 cut(s)	1436
BstV2I	GAAGAC	3 cut(s)	602, 1091, 2889
BstX2I	RGATCY	6 cut(s)	120, 391, 958, 1289, 1515, 1759
BstYI	RGATCY	6 cut(s)	120, 391, 958, 1289, 1515, 1759
BstZ17I	GTATAC	1 cut(s)	1545
BstZI	CGGCCG	1 cut(s)	21
Bsu36I	CCTNAGG	1 cut(s)	1314
BsuI	GTATCC	1 cut(s)	2364
BtgI	CCRYGG	2 cut(s)	1396, 2958
BtgZI	GCGATG	1 cut(s)	53
BtrI	CACGTC	1 cut(s)	596
BtsCI	GGATG	4 cut(s)	55, 448, 913, 2674
BtsI	GCAGTG	1 cut(s)	2523
BtsIMutI	CAGTG	8 cut(s)	671, 877, 1243, 1558, 1813, 2146, 2487, 2523
BveI	ACCTGC	3 cut(s)	1553, 2674, 2859
Cac8I	GCNNGC	4 cut(s)	703, 1161, 1471, 2554
CaiI	CAGNNNCTG	5 cut(s)	634, 854, 1843, 2717, 2909
CfoI	GCGC	3 cut(s)	748, 859, 2088
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	114, 2122
CseI	GACGC	2 cut(s)	121, 1942
Csp6I	GTAC	7 cut(s)	451, 602, 1051, 1348, 1440, 1915, 2022
CviQI	GTAC	7 cut(s)	451, 602, 1051, 1348, 1440, 1915, 2022
DriI	GACNNNNNGTC	1 cut(s)	2893
EaeI	YGGCCR	2 cut(s)	21, 2692
EagI	CGGCCG	1 cut(s)	21
Eam1104I	CTCTTC	4 cut(s)	159, 318, 1506, 1705
Eam1105I	GACNNNNNGTC	1 cut(s)	2893
EarI	CTCTTC	4 cut(s)	159, 318, 1506, 1705
Ecl136II	GAGCTC	1 cut(s)	18
EclXI	CGGCCG	1 cut(s)	21
Eco105I	TACGTA	1 cut(s)	1436
Eco130I	CCWWGG	4 cut(s)	259, 1396, 2089, 2958
Eco24I	GRGCYC	2 cut(s)	20, 2868
Eco31I	GGTCTC	1 cut(s)	2841
Eco47I	GGWCC	1 cut(s)	2122
Eco52I	CGGCCG	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	4 cut(s)	396, 711, 1103, 2049
Eco81I	CCTNAGG	1 cut(s)	1314
Eco88I	CYCGRG	2 cut(s)	116, 2867
Eco91I	GGTNACC	1 cut(s)	2305
EcoICRI	GAGCTC	1 cut(s)	18
EcoO65I	GGTNACC	1 cut(s)	2305
EcoRI	GAATTC	2 cut(s)	1415, 2241
EcoRII	CCWGG	1 cut(s)	456
EcoT14I	CCWWGG	4 cut(s)	259, 1396, 2089, 2958
EcoT22I	ATGCAT	1 cut(s)	1161
EcoT38I	GRGCYC	2 cut(s)	20, 2868
ErhI	CCWWGG	4 cut(s)	259, 1396, 2089, 2958
FaqI	GGGAC	3 cut(s)	37, 119, 1825
FauI	CCCGC	1 cut(s)	1980
FbaI	TGATCA	1 cut(s)	172
FblI	GTMKAC	2 cut(s)	102, 1544
FokI	GGATG	4 cut(s)	42, 455, 920, 2681
FriOI	GRGCYC	2 cut(s)	20, 2868
FspBI	CTAG	8 cut(s)	35, 267, 317, 396, 1623, 1895, 2051, 2751
FspI	TGCGCA	1 cut(s)	858
GlaI	GCGC	3 cut(s)	747, 858, 2087
GsaI	CCCAGC	1 cut(s)	1578
GsuI	CTGGAG	1 cut(s)	627
HapII	CCGG	4 cut(s)	24, 2238, 2610, 2934
HgaI	GACGC	2 cut(s)	121, 1942
HhaI	GCGC	3 cut(s)	748, 859, 2088
Hin1I	GRCGYC	1 cut(s)	1934
Hin6I	GCGC	3 cut(s)	746, 857, 2086
HinP1I	GCGC	3 cut(s)	746, 857, 2086
HincII	GTYRAC	3 cut(s)	103, 1035, 2538
HindII	GTYRAC	3 cut(s)	103, 1035, 2538
HindIII	AAGCTT	3 cut(s)	716, 795, 2374
HpaII	CCGG	4 cut(s)	24, 2238, 2610, 2934
HphI	GGTGA	6 cut(s)	25, 242, 819, 1577, 2299, 2379
Hpy166II	GTNNAC	6 cut(s)	103, 233, 1035, 1177, 1545, 2538
Hpy8I	GTNNAC	6 cut(s)	103, 233, 1035, 1177, 1545, 2538
HpyCH4III	ACNGT	7 cut(s)	1032, 1055, 1174, 1553, 1702, 1808, 2491
HpyCH4IV	ACGT	5 cut(s)	595, 1435, 1771, 2265, 2805
HpySE526I	ACGT	5 cut(s)	595, 1435, 1771, 2265, 2805
Hsp92I	GRCGYC	1 cut(s)	1934
HspAI	GCGC	3 cut(s)	746, 857, 2086
Kpn2I	TCCGGA	1 cut(s)	2237
Ksp22I	TGATCA	1 cut(s)	172
LmnI	GCTCC	3 cut(s)	75, 263, 2222
LweI	GCATC	7 cut(s)	30, 733, 1416, 1620, 2239, 2915, 2960
MaeI	CTAG	8 cut(s)	35, 267, 317, 396, 1623, 1895, 2051, 2751
MaeII	ACGT	5 cut(s)	595, 1435, 1771, 2265, 2805
MaeIII	GTNAC	3 cut(s)	2266, 2305, 2445
MfeI	CAATTG	3 cut(s)	408, 474, 2171
MflI	RGATCY	6 cut(s)	120, 391, 958, 1289, 1515, 1759
MhlI	GDGCHC	6 cut(s)	20, 954, 1366, 2098, 2811, 2868
MlsI	TGGCCA	1 cut(s)	2694
MluNI	TGGCCA	1 cut(s)	2694
MlyI	GAGTC	3 cut(s)	59, 1030, 1970
MmeI	TCCRAC	2 cut(s)	108, 1582
Mox20I	TGGCCA	1 cut(s)	2694
Mph1103I	ATGCAT	1 cut(s)	1161
MroI	TCCGGA	1 cut(s)	2237
MroXI	GAANNNNTTC	1 cut(s)	717
MscI	TGGCCA	1 cut(s)	2694
MseI	TTAA	8 cut(s)	237, 348, 576, 806, 999, 1530, 2738, 2814
MslI	CAYNNNNRTG	1 cut(s)	2105
Msp20I	TGGCCA	1 cut(s)	2694
MspA1I	CMGCKG	2 cut(s)	1840, 2915
MspCI	CTTAAG	2 cut(s)	347, 805
MspI	CCGG	4 cut(s)	24, 2238, 2610, 2934
MspR9I	CCNGG	2 cut(s)	458, 2611
MunI	CAATTG	3 cut(s)	408, 474, 2171
Mva1269I	GAATGC	3 cut(s)	426, 485, 2381
MvaI	CCWGG	1 cut(s)	458
NciI	CCSGG	1 cut(s)	2611
NcoI	CCATGG	2 cut(s)	1396, 2958
NlaIV	GGNNCC	4 cut(s)	393, 1302, 2760, 2976
NmuCI	GTSAC	3 cut(s)	2266, 2305, 2445
NsbI	TGCGCA	1 cut(s)	858
NsiI	ATGCAT	1 cut(s)	1161
NspI	RCATGY	4 cut(s)	1163, 1473, 1979, 2453
PaeI	GCATGC	2 cut(s)	1163, 1473
PaqCI	CACCTGC	1 cut(s)	1553
PctI	GAATGC	3 cut(s)	426, 485, 2381
PdmI	GAANNNNTTC	1 cut(s)	717
PfeI	GAWTC	7 cut(s)	242, 293, 365, 1195, 2144, 2675, 2945
PflMI	CCANNNNNTGG	2 cut(s)	463, 1224
PleI	GAGTC	3 cut(s)	58, 1030, 1969
PpsI	GAGTC	3 cut(s)	58, 1030, 1969
Ppu21I	YACGTR	2 cut(s)	1436, 2806
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	456
PspEI	GGTNACC	1 cut(s)	2305
PspFI	CCCAGC	1 cut(s)	1574
PspGI	CCWGG	1 cut(s)	456
PspN4I	GGNNCC	4 cut(s)	393, 1302, 2760, 2976
PspPI	GGNCC	2 cut(s)	114, 2122
PstI	CTGCAG	1 cut(s)	2914
PstNI	CAGNNNCTG	5 cut(s)	634, 854, 1843, 2717, 2909
PsuI	RGATCY	6 cut(s)	120, 391, 958, 1289, 1515, 1759
PvuII	CAGCTG	2 cut(s)	1840, 2915
RsaI	GTAC	7 cut(s)	452, 603, 1052, 1349, 1441, 1916, 2023
RsaNI	GTAC	7 cut(s)	451, 602, 1051, 1348, 1440, 1915, 2022
RseI	CAYNNNNRTG	1 cut(s)	2105
SacI	GAGCTC	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	101
SaqAI	TTAA	8 cut(s)	237, 348, 576, 806, 999, 1530, 2738, 2814
Sau96I	GGNCC	2 cut(s)	114, 2122
SchI	GAGTC	3 cut(s)	59, 1030, 1970
ScrFI	CCNGG	2 cut(s)	458, 2611
SduI	GDGCHC	6 cut(s)	20, 954, 1366, 2098, 2811, 2868
SfaNI	GCATC	7 cut(s)	30, 733, 1416, 1620, 2239, 2915, 2960
SfcI	CTRYAG	4 cut(s)	327, 1804, 2901, 2910
SinI	GGWCC	1 cut(s)	2122
SmiMI	CAYNNNNRTG	1 cut(s)	2105
SmlI	CTYRAG	6 cut(s)	65, 347, 500, 805, 2029, 2842
SmoI	CTYRAG	6 cut(s)	65, 347, 500, 805, 2029, 2842
SnaBI	TACGTA	1 cut(s)	1436
SphI	GCATGC	2 cut(s)	1163, 1473
SsiI	CCGC	7 cut(s)	194, 1335, 1359, 1973, 2167, 2310, 2699
SspMI	CTAG	8 cut(s)	35, 267, 317, 396, 1623, 1895, 2051, 2751
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	456, 2609
StyI	CCWWGG	4 cut(s)	259, 1396, 2089, 2958
TaaI	ACNGT	7 cut(s)	1032, 1055, 1174, 1553, 1702, 1808, 2491
TaiI	ACGT	5 cut(s)	598, 1438, 1774, 2268, 2808
TaqI	TCGA	4 cut(s)	102, 954, 2247, 2954
TatI	WGTACW	2 cut(s)	1050, 1914
TauI	GCSGC	2 cut(s)	197, 2170
TfiI	GAWTC	7 cut(s)	242, 293, 365, 1195, 2144, 2675, 2945
Tru1I	TTAA	8 cut(s)	237, 348, 576, 806, 999, 1530, 2738, 2814
Tru9I	TTAA	8 cut(s)	237, 348, 576, 806, 999, 1530, 2738, 2814
TscAI	CASTG	8 cut(s)	671, 877, 1243, 1558, 1813, 2146, 2494, 2530
TseFI	GTSAC	3 cut(s)	2266, 2305, 2445
Tsp45I	GTSAC	3 cut(s)	2266, 2305, 2445
TspGWI	ACGGA	3 cut(s)	1335, 1412, 2883
TspRI	CASTG	8 cut(s)	671, 877, 1243, 1558, 1813, 2146, 2494, 2530
Van91I	CCANNNNNTGG	2 cut(s)	463, 1224
Vha464I	CTTAAG	2 cut(s)	347, 805
VpaK11BI	GGWCC	1 cut(s)	2122
XapI	RAATTY	5 cut(s)	1005, 1232, 1415, 2241, 2783
XceI	RCATGY	4 cut(s)	1163, 1473, 1979, 2453
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2215
XmiI	GTMKAC	2 cut(s)	102, 1544
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	8 cut(s)	35, 267, 317, 396, 1623, 1895, 2051, 2751
Zsp2I	ATGCAT	1 cut(s)	1161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.