Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

5907850 .. 5909511

Gene Structure 1662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0044800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTCATCCAAAGTCTTGTTTTCGTTGCTTGCGTGTTTGAGAAAGGAGGAACGAGATACTGATGGATCCTCATTCTTGATAAACGGAAGCAAAGTACTAGAGGATCTCATTGTTTCTTTTGATGGCAAATCTAACCCTATTCGCAATTACTCTGCTGATGAGCTCATCAAGGCAACCAACAACTTTGATGCTTCTTGCATTATGCAAGAATGTAGGATCTACAAAATGTTCAGTGGTGTTCTAGACGATCGATCTATTATCATTAAGAAGTACTTCACGTTGAGCTGGCTCAATGAGGATGCAGTAAGATCTCTAGTTATTCGTGACATTATCATTTCAACACAGATGAGCAACCATAATAATGTTTTAAAACTTTTGGGATGCTGCTTAGAGTTTCCTATACCAGCTCTAGTGCATGAATATGCAACAATAGGAGTGCTAAATGATGAAGGAGGTTTCGGAGCTAGTGAATCCTTAACCTGGAAAGCTAGACTAGGTATAGCGAAGCAACTTGCAAATGCTCTTACATATCTCCATACTGCCTTTCCTAGGCCCATCATTCTCCGGGATCTAAATTTTAGTTGTATTTACTTGGGCCATGATTATGTTCCCAAACTCTCCTACTTCGGGCTCTCCATAACCATCCCTCCCATGAAATCATATGCTGAAGATGAACCAAAAGGAAGATTTGGGTACCTTGACCCTGCTTACATTACATCTGGTATTATTTCAGAGAAAGATTCAGAGCATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

251

Amino Acids

28.13

Weight (kDa)

5.77

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	102 - 238	3.4e-08	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	104 - 226	1.7e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	693
AccB1I	GGYRCC	1 cut(s)	693
AclWI	GGATC	5 cut(s)	60, 73, 111, 224, 576
AcsI	RAATTY	1 cut(s)	574
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	3 cut(s)	96, 272, 695
AfiI	CCNNNNNNNGG	3 cut(s)	480, 549, 627
AgsI	TTSAA	1 cut(s)	339
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	5 cut(s)	163, 285, 407, 464, 488
AluI	AGCT	5 cut(s)	163, 285, 407, 464, 488
Alw21I	GWGCWC	1 cut(s)	165
AlwI	GGATC	5 cut(s)	60, 73, 111, 224, 576
AoxI	GGCC	2 cut(s)	551, 595
ApeKI	GCWGC	1 cut(s)	384
ApoI	RAATTY	1 cut(s)	574
Asp700I	GAANNNNTTC	1 cut(s)	272
Asp718I	GGTACC	1 cut(s)	693
AspA2I	CCTAGG	1 cut(s)	548
AspS9I	GGNCC	2 cut(s)	552, 595
AsuC2I	CCSGG	1 cut(s)	566
AvrII	CCTAGG	1 cut(s)	548
BamHI	GGATCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	693
BanII	GRGCYC	2 cut(s)	165, 633
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	371
BccI	CCATC	4 cut(s)	56, 116, 563, 650
BciT130I	CCWGG	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	566
BfaI	CTAG	8 cut(s)	98, 242, 314, 410, 465, 489, 494, 549
BglII	AGATCT	1 cut(s)	308
BisI	GCNGC	1 cut(s)	385
BlnI	CCTAGG	1 cut(s)	548
BlsI	GCNGC	1 cut(s)	386
BmcAI	AGTACT	2 cut(s)	96, 272
Bme1390I	CCNGG	2 cut(s)	481, 566
BmgT120I	GGNCC	2 cut(s)	552, 595
BmiI	GGNNCC	2 cut(s)	67, 695
BmrFI	CCNGG	2 cut(s)	481, 566
BmsI	GCATC	3 cut(s)	178, 289, 371
BpuMI	CCSGG	1 cut(s)	566
Bsa29I	ATCGAT	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	548
BsaXI	ACNNNNNCTCC	2 cut(s)	631, 661
Bsc4I	CCNNNNNNNGG	3 cut(s)	480, 549, 627
BseBI	CCWGG	1 cut(s)	481
BseCI	ATCGAT	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	548
BseGI	GGATG	4 cut(s)	5, 304, 386, 642
BseLI	CCNNNNNNNGG	3 cut(s)	480, 549, 627
BseXI	GCAGC	1 cut(s)	371
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	2 cut(s)	553, 597
BshNI	GGYRCC	1 cut(s)	693
BshVI	ATCGAT	1 cut(s)	250
BsiEI	CGRYCG	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	565
BslI	CCNNNNNNNGG	3 cut(s)	480, 549, 627
BsnI	GGCC	2 cut(s)	553, 597
Bsp1286I	GDGCHC	2 cut(s)	165, 633
Bsp143I	GATC	7 cut(s)	65, 103, 216, 247, 251, 308, 568
BspANI	GGCC	2 cut(s)	553, 597
BspDI	ATCGAT	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	67, 695
BspPI	GGATC	5 cut(s)	60, 73, 111, 224, 576
BspT107I	GGYRCC	1 cut(s)	693
BssECI	CCNNGG	1 cut(s)	548
BssMI	GATC	7 cut(s)	65, 103, 216, 247, 251, 308, 568
BssT1I	CCWWGG	1 cut(s)	548
Bst2UI	CCWGG	1 cut(s)	481
BstC8I	GCNNGC	2 cut(s)	30, 287
BstDEI	CTNAG	1 cut(s)	388
BstENI	CCTNNNNNAGG	1 cut(s)	547
BstF5I	GGATG	4 cut(s)	5, 304, 386, 642
BstKTI	GATC	7 cut(s)	68, 106, 219, 250, 254, 311, 571
BstMBI	GATC	7 cut(s)	65, 103, 216, 247, 251, 308, 568
BstMCI	CGRYCG	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	481
BstSCI	CCNGG	2 cut(s)	479, 564
BstV1I	GCAGC	1 cut(s)	371
BstX2I	RGATCY	5 cut(s)	65, 103, 216, 308, 568
BstYI	RGATCY	5 cut(s)	65, 103, 216, 308, 568
Bsu15I	ATCGAT	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	553, 597
BsuTUI	ATCGAT	1 cut(s)	250
BtsCI	GGATG	4 cut(s)	5, 304, 386, 642
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	2 cut(s)	30, 287
Cfr13I	GGNCC	2 cut(s)	552, 595
ClaI	ATCGAT	1 cut(s)	250
Csp6I	GTAC	3 cut(s)	95, 271, 694
CviAII	CATG	3 cut(s)	416, 599, 652
CviJI	RGCY	9 cut(s)	163, 285, 289, 407, 464, 488, 553, 597, 631
CviKI_1	RGCY	9 cut(s)	163, 285, 289, 407, 464, 488, 553, 597, 631
CviQI	GTAC	3 cut(s)	95, 271, 694
DdeI	CTNAG	1 cut(s)	388
DpnI	GATC	7 cut(s)	67, 105, 218, 249, 253, 310, 570
DpnII	GATC	7 cut(s)	65, 103, 216, 247, 251, 308, 568
DraI	TTTAAA	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	548
Eco24I	GRGCYC	2 cut(s)	165, 633
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	687
EcoICRI	GAGCTC	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	479
EcoT14I	CCWWGG	1 cut(s)	548
EcoT38I	GRGCYC	2 cut(s)	165, 633
ErhI	CCWWGG	1 cut(s)	548
FaeI	CATG	3 cut(s)	419, 602, 655
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FatI	CATG	3 cut(s)	415, 598, 651
FauNDI	CATATG	1 cut(s)	661
Fnu4HI	GCNGC	1 cut(s)	385
FokI	GGATG	3 cut(s)	311, 393, 629
FriOI	GRGCYC	2 cut(s)	165, 633
Fsp4HI	GCNGC	1 cut(s)	385
FspBI	CTAG	8 cut(s)	98, 242, 314, 410, 465, 489, 494, 549
GluI	GCNGC	1 cut(s)	385
HaeIII	GGCC	2 cut(s)	553, 597
HapII	CCGG	1 cut(s)	565
Hin1II	CATG	3 cut(s)	419, 602, 655
HinfI	GANTC	2 cut(s)	470, 740
HpaII	CCGG	1 cut(s)	565
Hpy188I	TCNGA	3 cut(s)	461, 733, 745
Hpy188III	TCNNGA	3 cut(s)	76, 242, 323
HpyAV	CCTTC	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	6 cut(s)	198, 205, 302, 415, 425, 515
HpyF3I	CTNAG	1 cut(s)	388
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	3 cut(s)	419, 602, 655
KpnI	GGTACC	1 cut(s)	697
Kzo9I	GATC	7 cut(s)	65, 103, 216, 247, 251, 308, 568
LmnI	GCTCC	1 cut(s)	461
LpnPI	CCDG	7 cut(s)	271, 417, 466, 493, 578, 705, 717
Lsp1109I	GCAGC	1 cut(s)	371
LweI	GCATC	3 cut(s)	178, 289, 371
MaeI	CTAG	8 cut(s)	98, 242, 314, 410, 465, 489, 494, 549
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	7 cut(s)	67, 105, 218, 249, 253, 310, 570
MboI	GATC	7 cut(s)	65, 103, 216, 247, 251, 308, 568
MboII	GAAGA	2 cut(s)	680, 696
MflI	RGATCY	5 cut(s)	65, 103, 216, 308, 568
MhlI	GDGCHC	2 cut(s)	165, 633
MluCI	AATT	2 cut(s)	145, 574
MnlI	CCTC	6 cut(s)	40, 79, 94, 289, 446, 657
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	3 cut(s)	264, 368, 476
MslI	CAYNNNNRTG	3 cut(s)	360, 420, 603
MspI	CCGG	1 cut(s)	565
MspR9I	CCNGG	2 cut(s)	481, 566
MvaI	CCWGG	1 cut(s)	481
NciI	CCSGG	1 cut(s)	566
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	7 cut(s)	65, 103, 216, 247, 251, 308, 568
NlaIII	CATG	3 cut(s)	419, 602, 655
NlaIV	GGNNCC	2 cut(s)	67, 695
NmuCI	GTSAC	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	470, 740
PfoI	TCCNGGA	1 cut(s)	564
PkrI	GCNGC	1 cut(s)	386
Ple19I	CGATCG	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	2 cut(s)	67, 695
PspPI	GGNCC	2 cut(s)	552, 595
PsuI	RGATCY	5 cut(s)	65, 103, 216, 308, 568
PvuI	CGATCG	1 cut(s)	250
RsaI	GTAC	3 cut(s)	96, 272, 695
RsaNI	GTAC	3 cut(s)	95, 271, 694
RseI	CAYNNNNRTG	3 cut(s)	360, 420, 603
SacI	GAGCTC	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	264, 368, 476
SatI	GCNGC	1 cut(s)	385
Sau3AI	GATC	7 cut(s)	65, 103, 216, 247, 251, 308, 568
Sau96I	GGNCC	2 cut(s)	552, 595
ScaI	AGTACT	2 cut(s)	96, 272
ScrFI	CCNGG	2 cut(s)	481, 566
SduI	GDGCHC	2 cut(s)	165, 633
SfaNI	GCATC	3 cut(s)	178, 289, 371
SmiMI	CAYNNNNRTG	3 cut(s)	360, 420, 603
Sse9I	AATT	2 cut(s)	145, 574
SspMI	CTAG	8 cut(s)	98, 242, 314, 410, 465, 489, 494, 549
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	479, 564
StyI	CCWWGG	1 cut(s)	548
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	250
TasI	AATT	2 cut(s)	145, 574
TatI	WGTACW	2 cut(s)	94, 270
TfiI	GAWTC	2 cut(s)	470, 740
Tru1I	TTAA	3 cut(s)	264, 368, 476
Tru9I	TTAA	3 cut(s)	264, 368, 476
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	384
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	4 cut(s)	432, 462, 668, 687
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	547
XapI	RAATTY	1 cut(s)	574
XbaI	TCTAGA	1 cut(s)	241
XmaJI	CCTAGG	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	8 cut(s)	98, 242, 314, 410, 465, 489, 494, 549
ZrmI	AGTACT	2 cut(s)	96, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.