Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000651.1

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

38627 .. 40324

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000651.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggtaggcttggtcaccaacagctgtggtgggcaggctccaggatggcaagatgtgcagcctcatgatcctcaagttcaagatgcagccaaccatgttgtgaagagccttcaacaaaagtccaattcattattcccttatgagcttcaagagattgtccatgctaaggcagaggctatggattcatttgagccctatggaaatggatcaaatggagagaatggcgcaaatgtagaaaacgacgcaaatggaaacggggcagagcatgcattgccacccccaccccatgttatccctccagatgttgttccattgcatgctccgacagatattacacttgaaccttttgtgcgcctaccaattgctaggcgaggccttagaacaaaagggcaaaagattcctctgctgactaatagatttaaatctcttactatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

145

Amino Acids

15.64

Weight (kDa)

5.8

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	62, 214
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	4 cut(s)	80, 113, 149, 341
AjnI	CCWGG	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	2 cut(s)	24, 145
AluI	AGCT	2 cut(s)	24, 145
AlwI	GGATC	2 cut(s)	62, 214
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	2 cut(s)	58, 86
AspLEI	GCGC	2 cut(s)	227, 354
AsuHPI	GGTGA	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	70, 98
BccI	CCATC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	42
BfaI	CTAG	1 cut(s)	366
BisI	GCNGC	2 cut(s)	59, 87
BlsI	GCNGC	2 cut(s)	60, 88
Bme1390I	CCNGG	1 cut(s)	42
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	73
BpmI	CTGGAG	2 cut(s)	24, 282
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse3DI	GCAATG	2 cut(s)	269, 311
Bse8I	GATNNNNATC	1 cut(s)	421
BseBI	CCWGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	50
BseJI	GATNNNNATC	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	2 cut(s)	269, 311
BseXI	GCAGC	2 cut(s)	70, 98
BsgI	GTGCAG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	166
BsnI	GGCC	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	67, 206
BspANI	GGCC	1 cut(s)	375
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	2 cut(s)	62, 214
BspQI	GCTCTTC	1 cut(s)	98
BsrDI	GCAATG	2 cut(s)	269, 311
BssMI	GATC	2 cut(s)	67, 206
Bst2UI	CCWGG	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	98
BstAPI	GCANNNNNTGC	3 cut(s)	55, 266, 271
BstC8I	GCNNGC	3 cut(s)	36, 267, 318
BstDEI	CTNAG	2 cut(s)	165, 377
BstEII	GGTNACC	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	50
BstHHI	GCGC	2 cut(s)	227, 354
BstKTI	GATC	2 cut(s)	70, 209
BstMBI	GATC	2 cut(s)	67, 206
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 266, 271
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	2 cut(s)	269, 320
BstPI	GGTNACC	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	70, 98
BsuRI	GGCC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	50
Cac8I	GCNNGC	3 cut(s)	36, 267, 318
CciI	TCATGA	1 cut(s)	64
CfoI	GCGC	2 cut(s)	227, 354
CseI	GACGC	1 cut(s)	251
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviAII	CATG	6 cut(s)	65, 95, 161, 266, 287, 317
DdeI	CTNAG	2 cut(s)	165, 377
DpnI	GATC	2 cut(s)	69, 208
DpnII	GATC	2 cut(s)	67, 206
DraI	TTTAAA	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco147I	AGGCCT	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	195
Eco91I	GGTNACC	1 cut(s)	13
EcoO65I	GGTNACC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	6 cut(s)	68, 98, 164, 269, 290, 320
FaiI	YATR	9 cut(s)	66, 96, 141, 162, 179, 198, 267, 288, 318
FatI	CATG	6 cut(s)	64, 94, 160, 265, 286, 316
Fnu4HI	GCNGC	2 cut(s)	59, 87
FokI	GGATG	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	59, 87
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	2 cut(s)	226, 353
GluI	GCNGC	2 cut(s)	59, 87
GsuI	CTGGAG	2 cut(s)	24, 282
HaeIII	GGCC	1 cut(s)	375
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	2 cut(s)	227, 354
Hin1II	CATG	6 cut(s)	68, 98, 164, 269, 290, 320
Hin6I	GCGC	2 cut(s)	225, 352
HinP1I	GCGC	2 cut(s)	225, 352
HinfI	GANTC	2 cut(s)	182, 397
HphI	GGTGA	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	4 cut(s)	65, 80, 149, 299
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	4 cut(s)	58, 86, 269, 316
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 266, 271
HpyF3I	CTNAG	2 cut(s)	165, 377
Hsp92II	CATG	6 cut(s)	68, 98, 164, 269, 290, 320
HspAI	GCGC	2 cut(s)	225, 352
Kzo9I	GATC	2 cut(s)	67, 206
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	2 cut(s)	43, 325
LpnPI	CCDG	4 cut(s)	20, 27, 54, 312
Lsp1109I	GCAGC	2 cut(s)	70, 98
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	2 cut(s)	69, 208
MboI	GATC	2 cut(s)	67, 206
MboII	GAAGA	1 cut(s)	115
MfeI	CAATTG	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	2 cut(s)	124, 360
MmeI	TCCRAC	1 cut(s)	347
MnlI	CCTC	6 cut(s)	72, 81, 166, 306, 365, 411
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	42
MunI	CAATTG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	3 cut(s)	55, 266, 271
NdeII	GATC	2 cut(s)	67, 206
NlaIII	CATG	6 cut(s)	68, 98, 164, 269, 290, 320
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	13
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	2 cut(s)	269, 320
PaeI	GCATGC	2 cut(s)	269, 320
PagI	TCATGA	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	182, 397
PfoI	TCCNGGA	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	60, 88
Psp6I	CCWGG	1 cut(s)	40
PspEI	GGTNACC	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	2 cut(s)	59, 87
Sau3AI	GATC	2 cut(s)	67, 206
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	3 cut(s)	26, 147, 346
SfaNI	GCATC	1 cut(s)	73
SmiI	ATTTAAAT	1 cut(s)	421
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
SphI	GCATGC	2 cut(s)	269, 320
Sse9I	AATT	2 cut(s)	124, 360
SseBI	AGGCCT	1 cut(s)	375
SspMI	CTAG	1 cut(s)	366
StuI	AGGCCT	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	40
SwaI	ATTTAAAT	1 cut(s)	421
TasI	AATT	2 cut(s)	124, 360
TfiI	GAWTC	2 cut(s)	182, 397
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	2 cut(s)	58, 86
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	117, 174
XceI	RCATGY	2 cut(s)	269, 320
XspI	CTAG	1 cut(s)	366
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.