Rh6CG164600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000575
Physical Location & Seq
Forward (+)
22339585 .. 22341669
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG164600.1

Sequence Viewer

Length: 576 bp
ATGGACGACGGCCTCAATGAGGACTTCGGTTACGATCCAGATATTTACTACTTTGACACCTCGCTGCAAGCGTCCGATTCATATCATGTGGACATCAATCCAGAAGTTATCTGCAATGATGATGCTGCTTGGGAAAAAGAGGTGGTACCAGCTTTTGCTGAACTTGGCTTTATATGCACATGGACCAGCGATAATAAGATGGGATTTTCGATCGATCCAAAACTAGGGCCGCTTGAGGACACGAGTGTCTTCTTCAGGGCTGTGAATGCTTTAAATGCCTTTGCATATGGTTTTCCTGCACATTGGGCACTGAAACCACTGTCGGGCGATATGGAGTTCGATTCCTACGTGCTGACACCCACGGGTGGGATGACTGAGGAACAATTCGTTGAACGGTACACCATTTTTAAAGGCCTATATCAACATCATCCTTTCGGTGGTGATTTTGAAAGCCTGGTCAAGGAGTTTTTGAAAGAGCATGAAAGACTAAAGGATCGCCCATTTCCATATGATGATACGATGGAGACTGGCAAAGCACCAAGTGGTGAACTGGGCACATGTAATCTCAGCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.58

Weight (kDa)

4.26

Isoelectric Point (pI)

26.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
Acc65I GGTACC 1 cut(s) 145
AccB1I GGYRCC 1 cut(s) 145
AciI CCGC 1 cut(s) 230
AclWI GGATC 3 cut(s) 29, 209, 501
AcuI CTGAAG 1 cut(s) 238
AdeI CACNNNGTG 1 cut(s) 542
AfaI GTAC 2 cut(s) 147, 398
AfiI CCNNNNNNNGG 7 cut(s) 19, 224, 323, 365, 366, 437, 460
AflIII ACRYGT 1 cut(s) 557
AgsI TTSAA 3 cut(s) 392, 449, 472
AjnI CCWGG 1 cut(s) 453
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 3 cut(s) 29, 209, 501
AlwNI CAGNNNCTG 1 cut(s) 573
AoxI GGCC 3 cut(s) 10, 227, 412
ApeKI GCWGC 2 cut(s) 64, 125
Asp718I GGTACC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 183, 227
AsuHPI GGTGA 2 cut(s) 452, 557
AvaII GGWCC 1 cut(s) 183
BaeGI GKGCMC 2 cut(s) 310, 557
BanI GGYRCC 1 cut(s) 145
BauI CACGAG 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 51, 112
BccI CCATC 2 cut(s) 193, 514
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 455
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 1 cut(s) 224
BisI GCNGC 3 cut(s) 65, 126, 230
BlsI GCNGC 3 cut(s) 66, 127, 231
Bme1390I CCNGG 1 cut(s) 455
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 183, 227
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 455
BmrI ACTGGG 1 cut(s) 560
BmsI GCATC 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 560
BpiI GAAGAC 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 254
Bsa29I ATCGAT 1 cut(s) 213
BsaAI YACGTR 1 cut(s) 349
BsaBI GATNNNNATC 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 360
Bsc4I CCNNNNNNNGG 7 cut(s) 19, 224, 323, 365, 366, 437, 460
Bse1I ACTGG 2 cut(s) 532, 555
Bse3DI GCAATG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 81
BseBI CCWGG 1 cut(s) 455
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 2 cut(s) 375, 427
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 7 cut(s) 19, 224, 323, 365, 366, 437, 460
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 532, 555
BseSI GKGCMC 2 cut(s) 310, 557
BseXI GCAGC 2 cut(s) 51, 112
BsgI GTGCAG 1 cut(s) 282
Bsh1285I CGRYCG 1 cut(s) 213
BshFI GGCC 3 cut(s) 12, 229, 414
BshNI GGYRCC 1 cut(s) 145
BshVI ATCGAT 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 213
BslI CCNNNNNNNGG 7 cut(s) 19, 224, 323, 365, 366, 437, 460
BsmAI GTCTC 1 cut(s) 518
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 3 cut(s) 12, 229, 414
Bsp1286I GDGCHC 2 cut(s) 310, 557
Bsp143I GATC 4 cut(s) 34, 210, 214, 493
BspACI CCGC 1 cut(s) 230
BspANI GGCC 3 cut(s) 12, 229, 414
BspCNI CTCAG 1 cut(s) 367
BspDI ATCGAT 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 3 cut(s) 29, 209, 501
BspT107I GGYRCC 1 cut(s) 145
BsrDI GCAATG 1 cut(s) 121
BsrI ACTGG 2 cut(s) 532, 555
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 4 cut(s) 34, 210, 214, 493
BssSI CACGAG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 2 cut(s) 321, 396
BstBAI YACGTR 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 375, 566
BstDSI CCRYGG 1 cut(s) 360
BstENI CCTNNNNNAGG 2 cut(s) 17, 458
BstF5I GGATG 2 cut(s) 375, 427
BstKTI GATC 4 cut(s) 37, 213, 217, 496
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 4 cut(s) 34, 210, 214, 493
BstMCI CGRYCG 1 cut(s) 213
BstMWI GCNNNNNNNGC 4 cut(s) 174, 266, 275, 305
BstNI CCWGG 1 cut(s) 455
BstNSI RCATGY 1 cut(s) 561
BstSCI CCNGG 1 cut(s) 453
BstSLI GKGCMC 2 cut(s) 310, 557
BstV1I GCAGC 2 cut(s) 51, 112
BstV2I GAAGAC 1 cut(s) 241
Bsu15I ATCGAT 1 cut(s) 213
BsuRI GGCC 3 cut(s) 12, 229, 414
BsuTUI ATCGAT 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 360
BtsCI GGATG 2 cut(s) 375, 427
BtsIMutI CAGTG 2 cut(s) 308, 317
Cac8I GCNNGC 1 cut(s) 69
CaiI CAGNNNCTG 1 cut(s) 573
Cfr13I GGNCC 2 cut(s) 183, 227
ClaI ATCGAT 1 cut(s) 213
CseI GACGC 1 cut(s) 60
Csp6I GTAC 2 cut(s) 146, 397
CviAII CATG 4 cut(s) 86, 180, 479, 558
CviJI RGCY 7 cut(s) 12, 152, 168, 229, 260, 414, 453
CviKI_1 RGCY 7 cut(s) 12, 152, 168, 229, 260, 414, 453
CviQI GTAC 2 cut(s) 146, 397
DdeI CTNAG 2 cut(s) 375, 566
DpnI GATC 4 cut(s) 36, 212, 216, 495
DpnII GATC 4 cut(s) 34, 210, 214, 493
DraI TTTAAA 2 cut(s) 273, 409
DraIII CACNNNGTG 1 cut(s) 542
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
Eco147I AGGCCT 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 238
EcoNI CCTNNNNNAGG 2 cut(s) 17, 458
EcoRII CCWGG 1 cut(s) 453
FaeI CATG 4 cut(s) 89, 183, 482, 561
FatI CATG 4 cut(s) 85, 179, 478, 557
FauNDI CATATG 2 cut(s) 286, 508
Fnu4HI GCNGC 3 cut(s) 65, 126, 230
FokI GGATG 2 cut(s) 382, 414
Fsp4HI GCNGC 3 cut(s) 65, 126, 230
FspBI CTAG 1 cut(s) 224
GluI GCNGC 3 cut(s) 65, 126, 230
HaeIII GGCC 3 cut(s) 12, 229, 414
HgaI GACGC 1 cut(s) 60
Hin1II CATG 4 cut(s) 89, 183, 482, 561
HinfI GANTC 2 cut(s) 77, 341
HphI GGTGA 2 cut(s) 452, 557
Hpy166II GTNNAC 3 cut(s) 91, 399, 548
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 38, 101
Hpy8I GTNNAC 3 cut(s) 91, 399, 548
Hpy99I CGWCG 1 cut(s) 11
HpyCH4III ACNGT 2 cut(s) 321, 396
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 5 cut(s) 67, 114, 177, 284, 299
HpyF10VI GCNNNNNNNGC 4 cut(s) 174, 266, 275, 305
HpyF3I CTNAG 2 cut(s) 375, 566
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 4 cut(s) 89, 183, 482, 561
KpnI GGTACC 1 cut(s) 149
Kzo9I GATC 4 cut(s) 34, 210, 214, 493
Lsp1109I GCAGC 2 cut(s) 51, 112
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 29
MalI GATC 4 cut(s) 36, 212, 216, 495
MboI GATC 4 cut(s) 34, 210, 214, 493
MboII GAAGA 2 cut(s) 241, 244
MhlI GDGCHC 2 cut(s) 310, 557
MluCI AATT 1 cut(s) 383
MnlI CCTC 6 cut(s) 13, 23, 70, 133, 229, 370
MseI TTAA 2 cut(s) 272, 408
MspR9I CCNGG 1 cut(s) 455
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 455
MwoI GCNNNNNNNGC 4 cut(s) 174, 266, 275, 305
NdeI CATATG 2 cut(s) 286, 508
NdeII GATC 4 cut(s) 34, 210, 214, 493
NlaIII CATG 4 cut(s) 89, 183, 482, 561
NlaIV GGNNCC 1 cut(s) 147
NspI RCATGY 1 cut(s) 561
PceI AGGCCT 1 cut(s) 414
PciI ACATGT 1 cut(s) 557
PcsI WCGNNNNNNNCGW 2 cut(s) 68, 345
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 2 cut(s) 77, 341
PkrI GCNGC 3 cut(s) 66, 127, 231
Ple19I CGATCG 1 cut(s) 213
Ppu21I YACGTR 1 cut(s) 349
PscI ACATGT 1 cut(s) 557
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 183, 227
PstNI CAGNNNCTG 1 cut(s) 573
PvuI CGATCG 1 cut(s) 213
RsaI GTAC 2 cut(s) 147, 398
RsaNI GTAC 2 cut(s) 146, 397
SaqAI TTAA 2 cut(s) 272, 408
SatI GCNGC 3 cut(s) 65, 126, 230
Sau3AI GATC 4 cut(s) 34, 210, 214, 493
Sau96I GGNCC 2 cut(s) 183, 227
ScrFI CCNGG 1 cut(s) 455
SduI GDGCHC 2 cut(s) 310, 557
SetI ASST 5 cut(s) 62, 144, 154, 351, 575
SfaNI GCATC 1 cut(s) 112
SinI GGWCC 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 383
SseBI AGGCCT 1 cut(s) 414
SsiI CCGC 1 cut(s) 230
SspMI CTAG 1 cut(s) 224
StuI AGGCCT 1 cut(s) 414
StyD4I CCNGG 1 cut(s) 453
TaaI ACNGT 2 cut(s) 321, 396
TaiI ACGT 1 cut(s) 351
TaqI TCGA 3 cut(s) 209, 213, 339
TasI AATT 1 cut(s) 383
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 2 cut(s) 77, 341
Tru1I TTAA 2 cut(s) 272, 408
Tru9I TTAA 2 cut(s) 272, 408
TscAI CASTG 2 cut(s) 315, 324
TseI GCWGC 2 cut(s) 64, 125
TspDTI ATGAA 2 cut(s) 69, 495
TspRI CASTG 2 cut(s) 315, 324
VpaK11BI GGWCC 1 cut(s) 183
XagI CCTNNNNNAGG 2 cut(s) 17, 458
XceI RCATGY 1 cut(s) 561
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.