Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005626.1

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Reverse (-)

30052 .. 31247

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005626.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atgaaggtgggcatgctccacgctgtgaatagccttcagcaaaagtccaattcattgttcccttatgagcttcaagagattgtccatgctaaggcagaggtgatggaagatcatgccaagttcaacatgcttcttcagctgaagaggggagacaaagaagagaaatataaagttgaagtgcacaagaacaatgaaggtgcctacaatctgaatcagatggacgcgcaggactcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009892 GO:0010035 GO:0010466 GO:0010605 GO:0010951 GO:0012505 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0042221 GO:0043086 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0050897 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:1901700 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

78

Amino Acids

9.03

Weight (kDa)

6.04

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccII	CGCG	1 cut(s)	224
AcuI	CTGAAG	3 cut(s)	20, 119, 161
AdeI	CACNNNGTG	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	74, 124, 176
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	2 cut(s)	70, 139
AluI	AGCT	2 cut(s)	70, 139
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	144
Alw44I	GTGCAC	1 cut(s)	179
ApaLI	GTGCAC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	183
BccI	CCATC	2 cut(s)	97, 211
BcoDI	GTCTC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseSI	GKGCMC	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	224
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	1 cut(s)	109
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	197
BssMI	GATC	1 cut(s)	109
Bst6I	CTCTTC	2 cut(s)	137, 153
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	90
BstFNI	CGCG	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNSI	RCATGY	2 cut(s)	16, 130
BstSLI	GKGCMC	1 cut(s)	183
BstUI	CGCG	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	14
CfoI	GCGC	1 cut(s)	226
CseI	GACGC	1 cut(s)	230
CviAII	CATG	4 cut(s)	13, 86, 113, 127
CviJI	RGCY	3 cut(s)	33, 70, 139
CviKI_1	RGCY	3 cut(s)	33, 70, 139
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DraIII	CACNNNGTG	1 cut(s)	25
Eam1104I	CTCTTC	2 cut(s)	137, 153
EarI	CTCTTC	2 cut(s)	137, 153
Eco57I	CTGAAG	3 cut(s)	20, 119, 161
FaeI	CATG	4 cut(s)	16, 89, 116, 130
FaiI	YATR	6 cut(s)	14, 66, 87, 114, 128, 168
FatI	CATG	4 cut(s)	12, 85, 112, 126
GlaI	GCGC	1 cut(s)	225
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	4 cut(s)	16, 89, 116, 130
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	2 cut(s)	211, 230
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	210, 216
Hpy188III	TCNNGA	1 cut(s)	74
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	2 cut(s)	44, 188
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	16, 89, 116, 130
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	1 cut(s)	212
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	4 cut(s)	119, 125, 154, 170
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	2 cut(s)	91, 138
MspA1I	CMGCKG	1 cut(s)	139
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	4 cut(s)	16, 89, 116, 130
NlaIV	GGNNCC	1 cut(s)	199
NspI	RCATGY	2 cut(s)	16, 130
PaeI	GCATGC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	211
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	139
Sau3AI	GATC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	5 cut(s)	9, 72, 102, 141, 199
SgeI	CNNG	8 cut(s)	25, 32, 86, 98, 125, 130, 139, 196
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	1 cut(s)	49
TasI	AATT	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	211
TspDTI	ATGAA	3 cut(s)	17, 42, 207
VneI	GTGCAC	1 cut(s)	179
XceI	RCATGY	2 cut(s)	16, 130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.