Rh6CG188600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
30649882 .. 30658404
8523 bp
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UTR
Exon/CDS
Intron
Rh6CG188600.1

Sequence Viewer

Length: 468 bp
ATGTCGCGCGCTATGAGGGCTGATGAATCTCTTGAAGCTTTCACAACGGGTTTCTCGGCAAAGACGGCATTGAAAATACTGTCGGGCGATTATCGGTTAGTCTTGAGAGACTTTGATGACAAGATTAGTGAGAATTCAGTGTGTGATCGCTTGAACCATTTTGTTGACAAATATGAAGAATTTATGCAGGTGGTTGGTCAGCAGTTCCCCTGTGAAATTAAACATAATGAACATTGTATTGCTATCGTGGCAAATGCACAAATATGTAGTATTATGGCGGATCTCGTGTGGGAAGTAGTTATTTCCGATAATTATGATGTTCAACAAAAGCTCGAAAGTATGTTGGGGTTTTATGAGGAGCTTTCCGGATTTGAACATAATCCATACACTGATTCAGGGCTTGGACATGATGATATGATGGAACCAAGCAAATCACTGAATGATCAAATAGGCGAACTACTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.64

Weight (kDa)

4.45

Isoelectric Point (pI)

26.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 178
Acc36I ACCTGC 1 cut(s) 178
AccII CGCG 2 cut(s) 7, 9
AccIII TCCGGA 1 cut(s) 365
AciI CCGC 1 cut(s) 278
AclWI GGATC 1 cut(s) 288
AcsI RAATTY 2 cut(s) 133, 179
AgsI TTSAA 5 cut(s) 35, 73, 154, 323, 374
AluBI AGCT 3 cut(s) 38, 331, 361
AluI AGCT 3 cut(s) 38, 331, 361
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 1 cut(s) 288
Aor13HI TCCGGA 1 cut(s) 365
ApoI RAATTY 2 cut(s) 133, 179
AspLEI GCGC 2 cut(s) 9, 11
BauI CACGAG 1 cut(s) 284
BccI CCATC 1 cut(s) 412
BceAI ACGGC 1 cut(s) 81
BclI TGATCA 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 124
BsaWI WCCGGW 1 cut(s) 365
BseAI TCCGGA 1 cut(s) 365
BsePI GCGCGC 1 cut(s) 7
BseRI GAGGAG 1 cut(s) 371
Bsh1236I CGCG 2 cut(s) 7, 9
BsiSI CCGG 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 365
Bsp143I GATC 3 cut(s) 145, 280, 442
BspACI CCGC 1 cut(s) 278
BspEI TCCGGA 1 cut(s) 365
BspFNI CGCG 2 cut(s) 7, 9
BspLI GGNNCC 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 178
BspPI GGATC 1 cut(s) 288
BssHII GCGCGC 1 cut(s) 7
BssMI GATC 3 cut(s) 145, 280, 442
BssSI CACGAG 1 cut(s) 284
Bst2BI CACGAG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 9
BstFNI CGCG 2 cut(s) 7, 9
BstHHI GCGC 2 cut(s) 9, 11
BstKTI GATC 3 cut(s) 148, 283, 445
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 3 cut(s) 145, 280, 442
BstMWI GCNNNNNNNGC 3 cut(s) 17, 65, 248
BstUI CGCG 2 cut(s) 7, 9
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BtsIMutI CAGTG 3 cut(s) 144, 387, 434
BveI ACCTGC 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 2 cut(s) 9, 11
CviAII CATG 1 cut(s) 407
CviJI RGCY 5 cut(s) 20, 38, 331, 361, 400
CviKI_1 RGCY 5 cut(s) 20, 38, 331, 361, 400
DpnI GATC 3 cut(s) 147, 282, 444
DpnII GATC 3 cut(s) 145, 280, 442
EciI GGCGGA 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 133
FaeI CATG 1 cut(s) 410
FatI CATG 1 cut(s) 406
FbaI TGATCA 1 cut(s) 442
GlaI GCGC 2 cut(s) 8, 10
HapII CCGG 1 cut(s) 366
HhaI GCGC 2 cut(s) 9, 11
Hin1II CATG 1 cut(s) 410
Hin6I GCGC 2 cut(s) 7, 9
HinP1I GCGC 2 cut(s) 7, 9
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 2 cut(s) 26, 392
HpaII CCGG 1 cut(s) 366
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 3 cut(s) 32, 103, 366
Hpy8I GTNNAC 1 cut(s) 166
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 187, 257
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 65, 248
Hsp92II CATG 1 cut(s) 410
HspAI GCGC 2 cut(s) 7, 9
Kpn2I TCCGGA 1 cut(s) 365
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 3 cut(s) 145, 280, 442
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 4 cut(s) 173, 223, 379, 381
MalI GATC 3 cut(s) 147, 282, 444
MboI GATC 3 cut(s) 145, 280, 442
MboII GAAGA 1 cut(s) 188
MflI RGATCY 1 cut(s) 280
MluCI AATT 4 cut(s) 133, 179, 216, 310
MnlI CCTC 2 cut(s) 9, 349
MroI TCCGGA 1 cut(s) 365
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 262
MspI CCGG 1 cut(s) 366
MvnI CGCG 2 cut(s) 7, 9
MwoI GCNNNNNNNGC 3 cut(s) 17, 65, 248
NdeII GATC 3 cut(s) 145, 280, 442
NlaIII CATG 1 cut(s) 410
NlaIV GGNNCC 1 cut(s) 423
NmeAIII GCCGAG 1 cut(s) 35
PaqCI CACCTGC 1 cut(s) 178
PauI GCGCGC 1 cut(s) 7
PfeI GAWTC 2 cut(s) 26, 392
PspN4I GGNNCC 1 cut(s) 423
PsuI RGATCY 1 cut(s) 280
PteI GCGCGC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 262
SaqAI TTAA 1 cut(s) 219
Sau3AI GATC 3 cut(s) 145, 280, 442
SetI ASST 4 cut(s) 40, 192, 333, 363
SmiMI CAYNNNNRTG 1 cut(s) 262
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 4 cut(s) 133, 179, 216, 310
SsiI CCGC 1 cut(s) 278
TaaI ACNGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 333
TasI AATT 4 cut(s) 133, 179, 216, 310
TfiI GAWTC 2 cut(s) 26, 392
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 3 cut(s) 144, 394, 441
TspDTI ATGAA 3 cut(s) 39, 189, 243
TspRI CASTG 3 cut(s) 144, 394, 441
XapI RAATTY 2 cut(s) 133, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.