Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000575

Physical Location & Seq

Genomic Coordinates Forward (+)

13303242 .. 13304444

Gene Structure 1203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0100100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGCAAAGTCTTGTATATTGTCTGAAGAGATGGTGACGACACAGATAGTGTCAAGATTGCCTCCCAAGTCTTTGATGAGATTCAAATGCGTCTGTAAATTGTGGTACAAGGTAATCGGTAGTCCTAGCTTTCTGACCATGCACCTGTCCAATTCCATGCACAACAAATTTTCTTCATTCATTTCCATTGTTTTCAAGCGTACCATACTCAAGGACAACAACCTTACAGAAGAAGAAATATATCATGTCCTCAGGGACAGCAGTGATAGGAAGCAAGTTTTACTGTCATTACTCAATCTTTGCAACAATACTGTTGGTGATGGTCCACACCTTCAATCTGTTGTTGAAGACTTTACTGTTCCACCTCCTATGGGTCTAGCTTTTACTCTGCAGATCGTTGGTCATTGCGATGGGATCATTTGTCTAAGCACCCACGCCGGTAGTGATCGTGCTGCATTATGCAATCCATCAATCAAGGAATTCAAATTTCTTCCCAAGTCTTGTCTCATCCATCCGCCGAATGTAGCATATGTTTATCATGTTGGATTTGGATACGACTCTAAAGCGAAAGATTACAAGCTTGTTAGAATTGCATTGTCTATTTCGTATGGTGAACATCCTACTAGAGGAGAAATATACAGCTTGGGTTCTAATTCCTGGAGAGAAATCAAAACTGATTTCAGAACTAGAGTTTACAGTACACCTGGCTCAGGTCTGTACTTCAAGGGAAATTATTATTGGTATGCATTTAAGCAAGAAGAACCAGAATATCACAAGGAATTCATCCTTTCATTTGATATGAGTGACGAGTTATTTCATCATACATCAGTTCCAGATAGTTTCCATGTCACAGATGGATGTTACAGGAGCCTCGTAGTGTTGAGAGAATCCATTGCTCTTTTGTCCTACGAAGCAGGATATGGAGTTCCTAAAACTTTTGAAGTATGGGGAACGGAAGGTTTTGGTGCTGGTAAGGATGTTTGGACTAAATACGTCACCATCGGACCTTTAGAAGGCATTGAGATTCCATTGGTATTTTGGAAGAGTGACGAGCTTCTTGTGGTTACCAATAATGCAAGTGCAGTCTCCTACAATCTTTGCACCCAAACATCCAAGTATCTTCCCATTAATGGTGCCGAAGCATCTGATATAAAAGCTGTTGTTTATGTGAATAGTATTGTTTCCGTCAACCGAAGACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

400

Amino Acids

45.1

Weight (kDa)

7.18

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	14 - 45	4.6e-07	F-box domain
FBA_3	PF08268	114 - 338	8.4e-20	F-box associated beta propeller domain
FBA_1	PF07734	128 - 369	1e-31	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000575)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g03010
rosa_chinensis	RchiOBHm_Chr1g0317651 RchiOBHm_Chr1g0326371 RchiOBHm_Chr4g0389741 RchiOBHm_Chr6g0271691 RchiOBHm_Chr6g0272711 RchiOBHm_Chr6g0274891
rosa_laevigata	RLG00000013513 RLG00000013883 RLG00000014200 RLG00000026271 RLG00000028978 RLG00000029929 RLG00000030504
rosa_multiflora	Rmu_sc0000651.1_g000005 Rmu_sc0001291.1_g000002 Rmu_sc0001461.1_g000088 Rmu_sc0002798.1_g000009 Rmu_sc0005626.1_g000012 Rmu_ssc0000442.1_g000015
rosa_roxburghii	Rroxscaffold_1G00032590 Rroxscaffold_7G00165870 Rroxscaffold_7G00193850 Rroxscaffold_7G00199030
rosa_rugosa	Rorug01G0060100 Rorug01G0060100 Rorug01G0060200 Rorug01G0060200 Rorug01G0092200 Rorug01G0092300 Rorug01G0181800 Rorug02G0158800 Rorug05G0321800 Rorug06G0038300 Rorug06G0044800 Rorug06G0064700 Rorug06G0064700 Rorug06G0064700 Rorug06G0070200 Rorug06G0070300 Rorug06G0070400 Rorug06G0085600 Rorug06G0100100 Rorug07G0177400 Rorug07G0177400
rosa_samantha	Rh1AG028700 Rh1AG091900 Rh1AG092900 Rh1BG062000 Rh1BG072800 Rh1BG074200 Rh1CG090100 Rh2CG214100 Rh2DG414900 Rh2DG657700 Rh3BG361400 Rh4BG023100 Rh4BG177400 Rh5AG227800 Rh5AG303900 Rh6AG052700 Rh6AG165600 Rh6AG181400 Rh6AG182100 Rh6AG239300 Rh6BG168800 Rh6BG171000 Rh6BG295700 Rh6CG164600 Rh6CG181100 Rh6CG188600 Rh6CG205600 Rh6DG050700 Rh6DG156100 Rh6DG172600 Rh6DG180000 Rh6DG196000 Rh7BG447400
rosa_wichuraiana	Rw1G006050 Rw1G008690 Rw6G015610 Rw6G015960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1133
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	1 cut(s)	422
AcsI	RAATTY	4 cut(s)	167, 479, 485, 779
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	4 cut(s)	107, 202, 700, 719
AfiI	CCNNNNNNNGG	5 cut(s)	371, 626, 710, 1013, 1130
AgsI	TTSAA	7 cut(s)	85, 196, 335, 347, 484, 724, 941
AjnI	CCWGG	2 cut(s)	656, 703
AjuI	GAANNNNNNNTTGG	2 cut(s)	721, 753
AloI	GAACNNNNNNTCC	2 cut(s)	909, 941
AluBI	AGCT	6 cut(s)	129, 380, 580, 642, 1054, 1157
AluI	AGCT	6 cut(s)	129, 380, 580, 642, 1054, 1157
Alw26I	GTCTC	2 cut(s)	509, 1090
AlwI	GGATC	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	4 cut(s)	167, 479, 485, 779
AseI	ATTAAT	1 cut(s)	1128
AspS9I	GGNCC	2 cut(s)	323, 1004
AsuHPI	GGTGA	4 cut(s)	46, 329, 623, 988
AvaII	GGWCC	2 cut(s)	323, 1004
AxyI	CCTNAGG	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	1133
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	7 cut(s)	25, 314, 404, 475, 519, 848, 1007
BciT130I	CCWGG	2 cut(s)	658, 705
BciVI	GTATCC	1 cut(s)	545
BcoDI	GTCTC	2 cut(s)	509, 1090
BfaI	CTAG	4 cut(s)	126, 377, 624, 687
BfmI	CTRYAG	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	545
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
Bme1390I	CCNGG	2 cut(s)	658, 705
Bme18I	GGWCC	2 cut(s)	323, 1004
BmgT120I	GGNCC	2 cut(s)	323, 1004
BmiI	GGNNCC	2 cut(s)	869, 1135
BmrFI	CCNGG	2 cut(s)	658, 705
BmsI	GCATC	1 cut(s)	1151
BpiI	GAAGAC	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	679
Bpu10I	CCTNAGC	1 cut(s)	709
BpuEI	CTTGAG	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	5 cut(s)	371, 626, 710, 1013, 1130
Bse118I	RCCGGY	1 cut(s)	437
Bse21I	CCTNAGG	1 cut(s)	251
Bse3DI	GCAATG	2 cut(s)	403, 891
BseBI	CCWGG	2 cut(s)	658, 705
BseGI	GGATG	7 cut(s)	507, 511, 616, 783, 863, 982, 1109
BseLI	CCNNNNNNNGG	5 cut(s)	371, 626, 710, 1013, 1130
BseMI	GCAATG	2 cut(s)	403, 891
BseMII	CTCAG	2 cut(s)	265, 723
BseRI	GAGGAG	1 cut(s)	642
BseXI	GCAGC	1 cut(s)	439
BsgI	GTGCAG	1 cut(s)	1101
BshNI	GGYRCC	1 cut(s)	1133
BsiSI	CCGG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	5 cut(s)	371, 626, 710, 1013, 1130
BsmAI	GTCTC	2 cut(s)	509, 1090
BsmFI	GGGAC	1 cut(s)	269
Bsp143I	GATC	3 cut(s)	393, 414, 445
BspACI	CCGC	1 cut(s)	515
BspCNI	CTCAG	2 cut(s)	264, 722
BspLI	GGNNCC	2 cut(s)	869, 1135
BspMAI	CTGCAG	1 cut(s)	393
BspPI	GGATC	1 cut(s)	422
BspT107I	GGYRCC	1 cut(s)	1133
BsrDI	GCAATG	2 cut(s)	403, 891
BsrFI	RCCGGY	1 cut(s)	437
BssAI	RCCGGY	1 cut(s)	437
BssMI	GATC	3 cut(s)	393, 414, 445
Bst2UI	CCWGG	2 cut(s)	658, 705
Bst4CI	ACNGT	4 cut(s)	285, 313, 358, 698
Bst6I	CTCTTC	2 cut(s)	21, 1037
BstDEI	CTNAG	3 cut(s)	251, 425, 709
BstEII	GGTNACC	1 cut(s)	1063
BstENI	CCTNNNNNAGG	3 cut(s)	624, 708, 1011
BstF5I	GGATG	7 cut(s)	507, 511, 616, 783, 863, 982, 1109
BstKTI	GATC	3 cut(s)	396, 417, 448
BstMAI	GTCTC	2 cut(s)	509, 1090
BstMBI	GATC	3 cut(s)	393, 414, 445
BstNI	CCWGG	2 cut(s)	658, 705
BstPI	GGTNACC	1 cut(s)	1063
BstSCI	CCNGG	2 cut(s)	656, 703
BstSFI	CTRYAG	1 cut(s)	389
BstV1I	GCAGC	1 cut(s)	439
BstV2I	GAAGAC	1 cut(s)	354
Bsu36I	CCTNAGG	1 cut(s)	251
BsuI	GTATCC	1 cut(s)	545
BtgZI	GCGATG	1 cut(s)	423
BtsCI	GGATG	7 cut(s)	507, 511, 616, 783, 863, 982, 1109
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	2 cut(s)	323, 1004
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	4 cut(s)	106, 201, 699, 718
CviAII	CATG	5 cut(s)	139, 157, 245, 539, 845
CviJI	RGCY	8 cut(s)	129, 380, 580, 642, 708, 870, 1054, 1157
CviKI_1	RGCY	8 cut(s)	129, 380, 580, 642, 708, 870, 1054, 1157
CviQI	GTAC	4 cut(s)	106, 201, 699, 718
DdeI	CTNAG	3 cut(s)	251, 425, 709
DpnI	GATC	3 cut(s)	395, 416, 447
DpnII	GATC	3 cut(s)	393, 414, 445
Eam1104I	CTCTTC	2 cut(s)	21, 1037
EarI	CTCTTC	2 cut(s)	21, 1037
EciI	GGCGGA	1 cut(s)	504
Eco47I	GGWCC	2 cut(s)	323, 1004
Eco57I	CTGAAG	1 cut(s)	45
Eco81I	CCTNAGG	1 cut(s)	251
Eco91I	GGTNACC	1 cut(s)	1063
EcoNI	CCTNNNNNAGG	3 cut(s)	624, 708, 1011
EcoO65I	GGTNACC	1 cut(s)	1063
EcoRI	GAATTC	2 cut(s)	479, 779
EcoRII	CCWGG	2 cut(s)	656, 703
EcoT22I	ATGCAT	1 cut(s)	748
FaeI	CATG	5 cut(s)	142, 160, 248, 542, 848
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	5 cut(s)	138, 156, 244, 538, 844
FauNDI	CATATG	1 cut(s)	529
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	7 cut(s)	494, 498, 603, 770, 870, 989, 1096
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	4 cut(s)	126, 377, 624, 687
GluI	GCNGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	679
HapII	CCGG	1 cut(s)	438
HgaI	GACGC	1 cut(s)	79
Hin1II	CATG	5 cut(s)	142, 160, 248, 542, 848
HincII	GTYRAC	1 cut(s)	1189
HindII	GTYRAC	1 cut(s)	1189
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	4 cut(s)	81, 557, 887, 1024
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	4 cut(s)	46, 329, 623, 988
Hpy166II	GTNNAC	5 cut(s)	326, 614, 694, 701, 1189
Hpy188I	TCNGA	5 cut(s)	25, 135, 683, 1004, 1147
Hpy188III	TCNNGA	2 cut(s)	54, 833
Hpy8I	GTNNAC	5 cut(s)	326, 614, 694, 701, 1189
HpyAV	CCTTC	3 cut(s)	341, 950, 1007
HpyCH4III	ACNGT	4 cut(s)	285, 313, 358, 698
HpyCH4IV	ACGT	1 cut(s)	993
HpyF3I	CTNAG	3 cut(s)	251, 425, 709
HpySE526I	ACGT	1 cut(s)	993
Hsp92II	CATG	5 cut(s)	142, 160, 248, 542, 848
Kzo9I	GATC	3 cut(s)	393, 414, 445
LmnI	GCTCC	1 cut(s)	867
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	1 cut(s)	1151
MaeI	CTAG	4 cut(s)	126, 377, 624, 687
MaeII	ACGT	1 cut(s)	993
MaeIII	GTNAC	7 cut(s)	34, 803, 847, 860, 994, 1046, 1063
MalI	GATC	3 cut(s)	395, 416, 447
MboI	GATC	3 cut(s)	393, 414, 445
MboII	GAAGA	9 cut(s)	38, 165, 242, 245, 359, 482, 770, 1054, 1112
MluCI	AATT	9 cut(s)	98, 151, 167, 479, 485, 588, 652, 730, 779
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	523
MnlI	CCTC	5 cut(s)	72, 260, 375, 620, 881
Mph1103I	ATGCAT	1 cut(s)	748
MseI	TTAA	2 cut(s)	750, 1128
MslI	CAYNNNNRTG	1 cut(s)	408
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	2 cut(s)	658, 705
MvaI	CCWGG	2 cut(s)	658, 705
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	3 cut(s)	393, 414, 445
NlaIII	CATG	5 cut(s)	142, 160, 248, 542, 848
NlaIV	GGNNCC	2 cut(s)	869, 1135
NmuCI	GTSAC	5 cut(s)	34, 803, 847, 994, 1046
NsiI	ATGCAT	1 cut(s)	748
PfeI	GAWTC	3 cut(s)	81, 887, 1024
PfoI	TCCNGGA	1 cut(s)	656
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
PshBI	ATTAAT	1 cut(s)	1128
Psp6I	CCWGG	2 cut(s)	656, 703
PspEI	GGTNACC	1 cut(s)	1063
PspGI	CCWGG	2 cut(s)	656, 703
PspN4I	GGNNCC	2 cut(s)	869, 1135
PspPI	GGNCC	2 cut(s)	323, 1004
PstI	CTGCAG	1 cut(s)	393
RsaI	GTAC	4 cut(s)	107, 202, 700, 719
RsaNI	GTAC	4 cut(s)	106, 201, 699, 718
RseI	CAYNNNNRTG	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	750, 1128
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	3 cut(s)	393, 414, 445
Sau96I	GGNCC	2 cut(s)	323, 1004
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	658, 705
SfaNI	GCATC	1 cut(s)	1151
SfcI	CTRYAG	1 cut(s)	389
SinI	GGWCC	2 cut(s)	323, 1004
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	9 cut(s)	98, 151, 167, 479, 485, 588, 652, 730, 779
SsiI	CCGC	1 cut(s)	515
SspMI	CTAG	4 cut(s)	126, 377, 624, 687
StyD4I	CCNGG	2 cut(s)	656, 703
TaaI	ACNGT	4 cut(s)	285, 313, 358, 698
TaiI	ACGT	1 cut(s)	996
TasI	AATT	9 cut(s)	98, 151, 167, 479, 485, 588, 652, 730, 779
TatI	WGTACW	2 cut(s)	698, 717
TfiI	GAWTC	3 cut(s)	81, 887, 1024
Tru1I	TTAA	2 cut(s)	750, 1128
Tru9I	TTAA	2 cut(s)	750, 1128
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	5 cut(s)	34, 803, 847, 994, 1046
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	5 cut(s)	34, 803, 847, 994, 1046
TspDTI	ATGAA	5 cut(s)	165, 169, 772, 780, 806
TspGWI	ACGGA	2 cut(s)	968, 1174
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	323, 1004
VspI	ATTAAT	1 cut(s)	1128
XagI	CCTNNNNNAGG	3 cut(s)	624, 708, 1011
XapI	RAATTY	4 cut(s)	167, 479, 485, 779
XcmI	CCANNNNNNNNNTGG	2 cut(s)	851, 1035
XspI	CTAG	4 cut(s)	126, 377, 624, 687
Zsp2I	ATGCAT	1 cut(s)	748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.